mRNA_H-paniculata_contig2315.6229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2315.6229.1
Unique NamemRNA_H-paniculata_contig2315.6229.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2315.6229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2315contigH-paniculata_contig2315:1055..1542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2315.6229.1prot_H-paniculata_contig2315.6229.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2315 1124..1513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.4642866-UTR-H-paniculata_contig2315:1054..11231622929653.4642866-UTR-H-paniculata_contig2315:1054..1123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2315 1055..1123 +
1691480952.7283998-UTR-H-paniculata_contig2315:1054..11231691480952.7283998-UTR-H-paniculata_contig2315:1054..1123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2315 1055..1123 +
1622929653.4975371-UTR-H-paniculata_contig2315:1513..15421622929653.4975371-UTR-H-paniculata_contig2315:1513..1542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2315 1514..1542 +
1691480952.7487042-UTR-H-paniculata_contig2315:1513..15421691480952.7487042-UTR-H-paniculata_contig2315:1513..1542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2315 1514..1542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.4800978-CDS-H-paniculata_contig2315:1123..15131622929653.4800978-CDS-H-paniculata_contig2315:1123..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 1124..1513 +
1691480952.7391381-CDS-H-paniculata_contig2315:1123..15131691480952.7391381-CDS-H-paniculata_contig2315:1123..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 1124..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2315.6229.1

>prot_H-paniculata_contig2315.6229.1 ID=prot_H-paniculata_contig2315.6229.1|Name=mRNA_H-paniculata_contig2315.6229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MGIMFFRQVVKGSSAVPAGSVETTEVSVTTAINVSFGQHHAIENANKINY
MAYKIVRGSIITVTFAAELHQRWSTLGITIIRQIKLTSRTLKREPNREKT
RYNHNRKSIGGDQLDVPQKIPSCRGLQLL*
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mRNA from alignment at H-paniculata_contig2315:1055..1542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2315.6229.1 ID=mRNA_H-paniculata_contig2315.6229.1|Name=mRNA_H-paniculata_contig2315.6229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=488bp|location=Sequence derived from alignment at H-paniculata_contig2315:1055..1542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGTATCATACAATCATTTCATTCTCATTACTAGATCAACTTGAAC
TTCCCCATCATGACCACCAATGGGCATCATGTTTTTCCGACAGGTGGTCA
AGGGATCCTCTGCTGTGCCAGCTGGCTCTGTAGAAACCACTGAAGTTTCA
GTCACGACAGCGATCAATGTCAGTTTCGGACAGCATCATGCGATTGAGAA
TGCAAATAAAATAAATTATATGGCTTACAAAATCGTTCGAGGCTCCATTA
TCACCGTCACATTTGCTGCTGAGCTTCACCAGCGGTGGTCGACGCTTGGA
ATCACAATTATTCGCCAAATAAAACTGACCTCACGGACATTGAAGCGAGA
ACCGAACCGAGAGAAGACAAGATATAACCACAATCGAAAGTCCATTGGTG
GAGACCAACTAGATGTGCCGCAGAAAATTCCCTCATGCCGAGGCTTGCAG
CTCTTATAAAAGTGGCATTACCATCTTCCCTGTACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2315:1055..1542+

>mRNA_H-paniculata_contig2315.6229.1 ID=mRNA_H-paniculata_contig2315.6229.1|Name=mRNA_H-paniculata_contig2315.6229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig2315:1055..1542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCATCATGTTTTTCCGACAGGTGGTCAAGGGATCCTCTGCTGTGCC
AGCTGGCTCTGTAGAAACCACTGAAGTTTCAGTCACGACAGCGATCAATG
TCAGTTTCGGACAGCATCATGCGATTGAGAATGCAAATAAAATAAATTAT
ATGGCTTACAAAATCGTTCGAGGCTCCATTATCACCGTCACATTTGCTGC
TGAGCTTCACCAGCGGTGGTCGACGCTTGGAATCACAATTATTCGCCAAA
TAAAACTGACCTCACGGACATTGAAGCGAGAACCGAACCGAGAGAAGACA
AGATATAACCACAATCGAAAGTCCATTGGTGGAGACCAACTAGATGTGCC
GCAGAAAATTCCCTCATGCCGAGGCTTGCAGCTCTTATAAATGGGCATCA
TGTTTTTCCGACAGGTGGTCAAGGGATCCTCTGCTGTGCCAGCTGGCTCT
GTAGAAACCACTGAAGTTTCAGTCACGACAGCGATCAATGTCAGTTTCGG
ACAGCATCATGCGATTGAGAATGCAAATAAAATAAATTATATGGCTTACA
AAATCGTTCGAGGCTCCATTATCACCGTCACATTTGCTGCTGAGCTTCAC
CAGCGGTGGTCGACGCTTGGAATCACAATTATTCGCCAAATAAAACTGAC
CTCACGGACATTGAAGCGAGAACCGAACCGAGAGAAGACAAGATATAACC
ACAATCGAAAGTCCATTGGTGGAGACCAACTAGATGTGCCGCAGAAAATT
CCCTCATGCCGAGGCTTGCAGCTCTTATAA
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