mRNA_H-paniculata_contig2314.6226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2314.6226.1
Unique NamemRNA_H-paniculata_contig2314.6226.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2314.6226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2314contigH-paniculata_contig2314:6842..7617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size776
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2314.6226.1prot_H-paniculata_contig2314.6226.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2314 7025..7477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.1768017-UTR-H-paniculata_contig2314:6841..70241622929653.1768017-UTR-H-paniculata_contig2314:6841..7024Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2314 6842..7024 +
1691480952.6071098-UTR-H-paniculata_contig2314:6841..70241691480952.6071098-UTR-H-paniculata_contig2314:6841..7024Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2314 6842..7024 +
1622929653.2013607-UTR-H-paniculata_contig2314:7477..76171622929653.2013607-UTR-H-paniculata_contig2314:7477..7617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2314 7478..7617 +
1691480952.625753-UTR-H-paniculata_contig2314:7477..76171691480952.625753-UTR-H-paniculata_contig2314:7477..7617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2314 7478..7617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.1906857-CDS-H-paniculata_contig2314:7024..74771622929653.1906857-CDS-H-paniculata_contig2314:7024..7477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2314 7025..7477 +
1691480952.6171513-CDS-H-paniculata_contig2314:7024..74771691480952.6171513-CDS-H-paniculata_contig2314:7024..7477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2314 7025..7477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2314.6226.1

>prot_H-paniculata_contig2314.6226.1 ID=prot_H-paniculata_contig2314.6226.1|Name=mRNA_H-paniculata_contig2314.6226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MAGGGRRAKNDDDGNSSTRTRGRCGAGRRGASDGGAGSCGTGACGSNGRI
QTAAVPLLRMAWGRKRKTKKRRRSMMTRRSSARLLSSASGEKIHVLSFTF
VVLAVRGISPQLLGGGVRAKSSLHQHALRLHRTYWGRNAHRTRSLHVILM
*
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mRNA from alignment at H-paniculata_contig2314:6842..7617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2314.6226.1 ID=mRNA_H-paniculata_contig2314.6226.1|Name=mRNA_H-paniculata_contig2314.6226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=776bp|location=Sequence derived from alignment at H-paniculata_contig2314:6842..7617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGTGGTGTCGCCAACGATAACCATGTCCGTGAGGATGACCATGACGA
TAGCAATGATGACCTCCAAGGGCCCGGCCGTTGCGGGGCTTCATCGGGCG
GTGCTATCGCTGAAGATAATAACGGCTGCCAAGGCTCGGGCCGCGGCCGT
GGCGGGACTGGCGGCCGCGGCGGGGCTGGTAGCATGGCTGGTGGCGGCCG
CCGTGCTAAAAATGACGATGATGGCAATTCCAGCACCCGTACGCGCGGCC
GCTGCGGTGCAGGCCGCCGCGGTGCCAGTGACGGAGGCGCCGGAAGCTGT
GGTACTGGCGCCTGCGGTTCAAATGGCCGCATACAGACGGCCGCGGTGCC
GCTGCTGCGGATGGCATGGGGGAGGAAGAGGAAGACGAAGAAAAGGAGGA
GGAGCATGATGACGAGGAGGAGCTCAGCTCGGCTGCTGTCGTCGGCAAGT
GGTGAAAAAATTCACGTGCTTAGCTTCACCTTTGTCGTCTTGGCCGTACG
TGGTATTTCTCCTCAGCTCTTAGGGGGTGGGGTTCGAGCAAAGTCGTCGT
TGCACCAACACGCGCTGCGATTGCATCGCACATATTGGGGGCGCAACGCA
CACCGTACGCGGTCATTACACGTGATACTCATGTAGACATGTGGTAGCGA
TAGGTGAGGGTTTTCTGGACTCTTTGAAGAGGGGAGTTGTTCATTTGCAG
TTAGTTAGTGGTCGCTAGTGGACAAATACCTAGTAAAAAGAATAGTTATA
AAATGAGTATCTATTGTAAGACTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2314:6842..7617+

>mRNA_H-paniculata_contig2314.6226.1 ID=mRNA_H-paniculata_contig2314.6226.1|Name=mRNA_H-paniculata_contig2314.6226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig2314:6842..7617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGTGGCGGCCGCCGTGCTAAAAATGACGATGATGGCAATTCCAG
CACCCGTACGCGCGGCCGCTGCGGTGCAGGCCGCCGCGGTGCCAGTGACG
GAGGCGCCGGAAGCTGTGGTACTGGCGCCTGCGGTTCAAATGGCCGCATA
CAGACGGCCGCGGTGCCGCTGCTGCGGATGGCATGGGGGAGGAAGAGGAA
GACGAAGAAAAGGAGGAGGAGCATGATGACGAGGAGGAGCTCAGCTCGGC
TGCTGTCGTCGGCAAGTGGTGAAAAAATTCACGTGCTTAGCTTCACCTTT
GTCGTCTTGGCCGTACGTGGTATTTCTCCTCAGCTCTTAGGGGGTGGGGT
TCGAGCAAAGTCGTCGTTGCACCAACACGCGCTGCGATTGCATCGCACAT
ATTGGGGGCGCAACGCACACCGTACGCGGTCATTACACGTGATACTCATG
TAGATGGCTGGTGGCGGCCGCCGTGCTAAAAATGACGATGATGGCAATTC
CAGCACCCGTACGCGCGGCCGCTGCGGTGCAGGCCGCCGCGGTGCCAGTG
ACGGAGGCGCCGGAAGCTGTGGTACTGGCGCCTGCGGTTCAAATGGCCGC
ATACAGACGGCCGCGGTGCCGCTGCTGCGGATGGCATGGGGGAGGAAGAG
GAAGACGAAGAAAAGGAGGAGGAGCATGATGACGAGGAGGAGCTCAGCTC
GGCTGCTGTCGTCGGCAAGTGGTGAAAAAATTCACGTGCTTAGCTTCACC
TTTGTCGTCTTGGCCGTACGTGGTATTTCTCCTCAGCTCTTAGGGGGTGG
GGTTCGAGCAAAGTCGTCGTTGCACCAACACGCGCTGCGATTGCATCGCA
CATATTGGGGGCGCAACGCACACCGTACGCGGTCATTACACGTGATACTC
ATGTAG
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