mRNA_H-paniculata_contig23134.6225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23134.6225.1
Unique NamemRNA_H-paniculata_contig23134.6225.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23134.6225.1 vs. uniprot
Match: D7FUU0_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.730e-14
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 SNKEYESLVKNVLRAGVVDVAGRAQLRKHRVKHGIDAMHHLRVLRKLGWSLDDFEEG 174
            S++ YE+L K VLR G V+  GRA+LR HR  +GID++HH+RVL+KLGWSLD  EEG
Sbjct:  296 SSRTYEALAKEVLRDGTVNDKGRAKLRIHRQNNGIDSLHHMRVLKKLGWSLDQLEEG 352
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BLAST of mRNA_H-paniculata_contig23134.6225.1 vs. uniprot
Match: A0A6H5KY10_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY10_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.380e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNKEYESLVKNVLRAGVVDVAGRAQLRKHRVKHGIDAMHHLRVLRKLGWSLDDFEEG 174
            S + YE+L K VLR G V+  GR +LR HR  +G+D++HH+RVL+KLGWSLD  EEG
Sbjct:  393 STRTYEALAKEVLRDGTVNDKGRTKLRIHRQNNGVDSLHHMRVLKKLGWSLDQLEEG 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23134.6225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUU0_ECTSI1.730e-1461.40Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5KY10_9PHAE1.380e-1357.89Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23134contigH-paniculata_contig23134:976..1149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog2880.D7FUU0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Cyclic nucleotide-monophosphate binding domain
EggNOG OGs2DQI1@1,2S6BX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.1291568-CDS-H-paniculata_contig23134:975..11491622929653.1291568-CDS-H-paniculata_contig23134:975..1149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23134 976..1149 +
1691480952.597801-CDS-H-paniculata_contig23134:975..11491691480952.597801-CDS-H-paniculata_contig23134:975..1149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23134 976..1149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23134.6225.1prot_H-paniculata_contig23134.6225.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23134 976..1149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23134.6225.1

>prot_H-paniculata_contig23134.6225.1 ID=prot_H-paniculata_contig23134.6225.1|Name=mRNA_H-paniculata_contig23134.6225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
LSNKEYESLVKNVLRAGVVDVAGRAQLRKHRVKHGIDAMHHLRVLRKLGW
SLDDFEEG
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mRNA from alignment at H-paniculata_contig23134:976..1149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23134.6225.1 ID=mRNA_H-paniculata_contig23134.6225.1|Name=mRNA_H-paniculata_contig23134.6225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig23134:976..1149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCCAATAAAGAGTACGAGAGTCTCGTGAAGAACGTTCTGAGAGCTGG
TGTCGTGGATGTGGCCGGGCGAGCACAACTGAGAAAACACAGAGTGAAGC
ATGGAATCGACGCCATGCACCACCTGCGGGTCTTGCGAAAGCTTGGCTGG
AGCCTGGACGACTTCGAGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23134:976..1149+

>mRNA_H-paniculata_contig23134.6225.1 ID=mRNA_H-paniculata_contig23134.6225.1|Name=mRNA_H-paniculata_contig23134.6225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig23134:976..1149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATCCAATAAAGAGTACGAGAGTCTCGTGAAGAACGTTCTGAGAGCTGG
TGTCGTGGATGTGGCCGGGCGAGCACAACTGAGAAAACACAGAGTGAAGC
ATGGAATCGACGCCATGCACCACCTGCGGGTCTTGCGAAAGCTTGGCTGG
AGCCTGGACGACTTCGAGGAGGGGCTATCCAATAAAGAGTACGAGAGTCT
CGTGAAGAACGTTCTGAGAGCTGGTGTCGTGGATGTGGCCGGGCGAGCAC
AACTGAGAAAACACAGAGTGAAGCATGGAATCGACGCCATGCACCACCTG
CGGGTCTTGCGAAAGCTTGGCTGGAGCCTGGACGACTTCGAGGAGGGG
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