mRNA_H-paniculata_contig23132.6224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23132.6224.1
Unique NamemRNA_H-paniculata_contig23132.6224.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23132.6224.1 vs. uniprot
Match: A0A6H5K492_9PHAE (CRM1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K492_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.750e-35
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 2 
Query:  119 REEGFRRLSVDRKGVLVQRLCEGVLQRAP---DSATAKEGFDKVAGPVWTRLRGLLHAVGGLNGVQRQSPKVVAESLLCVRLCRGVVVACGSAGERRTL 406
            R++GFRRLSVD +G+LVQRLCEGVL RA    + A+AKEGF+KV GPVW R +GLLHAVGGL+G QRQSP+VV+ESL CVRLCRGV V CG+A     L
Sbjct:  135 RDQGFRRLSVDLQGLLVQRLCEGVLNRAALPSEGASAKEGFEKVVGPVWERFQGLLHAVGGLSGKQRQSPRVVSESLFCVRLCRGVAVGCGAAASHYEL 233
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BLAST of mRNA_H-paniculata_contig23132.6224.1 vs. uniprot
Match: D7FX52_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.290e-33
Identity = 70/114 (61.40%), Postives = 82/114 (71.93%), Query Frame = 2 
Query:    2 DLMGVLVCREKASATTSLPLWWDIVAVYGSGGAEGGL---------PRREEGFRRLSVDRKGVLVQRLCEGVLQRAP---DSATAKEGFDKVAGPVWTRLRGLLHAVGGLNGVQ 307
            DLMGVLV R KA +TTSLPLWW+IVA Y  G    G            R++GFRRLSVD +G+LVQRLCEGVL R+    + A+AKEGF+KV GPVW R RGLLHAVGGL+GV+
Sbjct:  740 DLMGVLVSRTKAPSTTSLPLWWEIVAAYDGGRQAAGAGXXXXXXXXXXRDQGFRRLSVDLQGLLVQRLCEGVLNRSALPSEGASAKEGFEKVVGPVWERFRGLLHAVGGLSGVR 853
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23132.6224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K492_9PHAE4.750e-3568.69CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FX52_ECTSI1.290e-3361.40Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23132contigH-paniculata_contig23132:210..2510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue8.3e-28
Seed eggNOG ortholog2880.D7FX52
KEGG koko:K18460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size581
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23132.6224.1prot_H-paniculata_contig23132.6224.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23132 328..2503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929652.9931931-UTR-H-paniculata_contig23132:209..3271622929652.9931931-UTR-H-paniculata_contig23132:209..327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23132 210..327 -
1691480952.5420072-UTR-H-paniculata_contig23132:209..3271691480952.5420072-UTR-H-paniculata_contig23132:209..327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23132 210..327 -
1622929653.083511-UTR-H-paniculata_contig23132:2503..25101622929653.083511-UTR-H-paniculata_contig23132:2503..2510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23132 2504..2510 -
1691480952.5842736-UTR-H-paniculata_contig23132:2503..25101691480952.5842736-UTR-H-paniculata_contig23132:2503..2510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23132 2504..2510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.0082843-CDS-H-paniculata_contig23132:327..4901622929653.0082843-CDS-H-paniculata_contig23132:327..490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23132 328..490 -
1691480952.5535486-CDS-H-paniculata_contig23132:327..4901691480952.5535486-CDS-H-paniculata_contig23132:327..490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23132 328..490 -
1622929653.042767-CDS-H-paniculata_contig23132:1637..17801622929653.042767-CDS-H-paniculata_contig23132:1637..1780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23132 1638..1780 -
1691480952.5629914-CDS-H-paniculata_contig23132:1637..17801691480952.5629914-CDS-H-paniculata_contig23132:1637..1780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23132 1638..1780 -
1622929653.06512-CDS-H-paniculata_contig23132:2353..25031622929653.06512-CDS-H-paniculata_contig23132:2353..2503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23132 2354..2503 -
1691480952.570851-CDS-H-paniculata_contig23132:2353..25031691480952.570851-CDS-H-paniculata_contig23132:2353..2503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23132 2354..2503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23132.6224.1

>prot_H-paniculata_contig23132.6224.1 ID=prot_H-paniculata_contig23132.6224.1|Name=mRNA_H-paniculata_contig23132.6224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MGVLVCREKASATTSLPLWWDIVAVYGSGGAEGGLPRREEGFRRLSVDRK
GVLVQRLCEGVLQRAPDSATAKEGFDKVAGPVWTRLRGLLHAVGGLNGVQ
RQSPKVVAESLLCVRLCRGVVVACGSAGERRTLACGVGGHGRIGLMQILS
L*
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mRNA from alignment at H-paniculata_contig23132:210..2510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23132.6224.1 ID=mRNA_H-paniculata_contig23132.6224.1|Name=mRNA_H-paniculata_contig23132.6224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at H-paniculata_contig23132:210..2510- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACCTCATGGGAGTTCTGGTTTGTCGCGAAAAGGCGTCGGCCACGACCA
GCTTGCCTCTCTGGTGGGATATTGTGGCAGTCTATGGCAGCGGCGGGGCG
GAGGGGGGCTTGCCGAGGCGAGAAGAAGGATTTCGTCGACTGTCGGTGGA
TAGGAAGGTATACCTTTTTGTGGCGAACGGTGTAACATAGTGTGTAACAT
TTCATCATTTTATTGATTTGATGGATTTTTTTGGGGGGGGGGAATAATGA
ATGCTCATTTCGCCATTCTGATTGAAACCAAATTGGTGAAATTAAAATAG
TAAATTTCTCGTATCTTGGCCAATTTTGATCCCGACAAAAAAGAAGTCCC
TTTTTTTATTGACCTGATGAAACTTGTGAATTTATCGCGTATTCAGTCAG
TGGAACGAACCAGGTGGAGATGTAAACGCTCCCGCTGGTTGGATTAATTA
AAAAAAAAAAAAAAAACTAAATTGGATTATGACTTCGTTGCCAGGTAATG
AACCCACGTAACAATTGTTGAGATTAATTTGCCGACGGTATGTGGGTGTC
CTTTTTATTGCTGTAGCACTAGTAGCTGTTGAGGGAAGACAGCATCTCCG
AAGTGGTACTAATCGAAGCGTTCGTCAGACGCCTCGCGTCAGCTTTCCTG
TTGAAAACAAGATACTCTTATCTTTTTTGTGTGTGTTTGATGGCTTGGGG
GGCGTGGGGGTGGTGGGCGGGGGCCAACAGGGCGTGTTAGTTCAACGTCT
GTGCGAGGGTGTTCTACAGCGAGCGCCCGACTCGGCTACGGCGAAAGAAG
GCTTCGACAAAGTCGCTGGACCCGTGTGGACAAGGCTGAGGGGACTTTTG
CACGCCGTCGGGGGTCTAAACGGGTGAGCCAGAGAACAGATTGACAGACG
AACGGGGGGCATGAATACCTTGGATGTGATGGTAATACTTGAATTATGGA
AGCATCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAACCCCC
AAAAAAACTTGGATGTGATTGAAGGAGTTGTCAAGACGGGATATGTTATG
GCATTGTGTAAGCTGATTGTTTTTTGTTTTTTTTCAATTTAAAGTTGGTG
TGCCACCACAGACCATTTTGGCATAAATGGTTCCGAAGAAAAAACGTTCC
AACACGCTACTCGTCCATATCGTACACCTGAACGTATGCTTTCCCGGATC
TCGGCCAGATCAATGCACGTTTTTCTGATTGGAGATACAGAAAGAGATAA
AATCCGATTGTTTTTGGGCACGGGCACGCGAACACAACATGTTTTGCCGC
AAACAAACGGAACACTATGGAGACTCGACCCTTGATGTGTTTGGCCCCGT
TTTTTTTTTTTTTTTTTCAAATATTGGCCGATGTAAAACTCGAGAGATAT
TTTGCCACCTCACTCCTTATTGGTCATGATCTAATTTTGCTGATAAGTGC
ATACATCTGCAGATTGAAGTCAGCTGCATAACCCCAACATGGGCATAATA
CCCTCCCCCCCCCCGGACAAATACGAATAATTGGCGTATTCGACACGAAA
ATTAAATAATAATCGCCTGAGTTTCACAATGAGCTCCTGTATTCTATATG
CTCCGAACCATCCACGACTGCTTATGACGCTCGCAAATCGAATGAAGAAG
GGTGGGTACTTGACTTGACTCTATGTTGGAACTTAGATAGTCCTTTGTAA
TTTTCGTGGCAGATACGCCAATTATTTGTATTCGTTGGGGGGGTGCAATA
TTGTTACAATATTATGATATAGTTCAAATGACTGTGGGATTTAATTTTCT
ACAATAATGAGGTTTTCACTTGGCAATTTGTTTTTGTGTGTTTGTGTATG
CGTGTGTGTGTTTCCAATTCTCGTGGTGTCGATCGTTCTTGTGAGGATTA
TTTCATGTTTCACCTATAGCACACATGCGAGTAATACACTGATATTTCCC
TTGTAAAGATTGCTCCAGTTCGTGTCATGAGCTATACTTCCCCCCGCCCT
ATTTGTCTTGGCATTCACAGCGTCCAGCGACAGAGCCCGAAGGTGGTGGC
CGAGAGTTTGCTCTGCGTTAGGCTGTGTCGGGGCGTTGTGGTCGCGTGCG
GGTCTGCAGGTGAACGCAGAACGTTGGCGTGTGGAGTTGGGGGGCATGGT
CGCATTGGATTGATGCAAATTCTTTCACTCTGAAGTCGAGGCGTCGTCGT
TTCGGGAAGTCGTCGTCTGCAGGAGGCTCATGCCGCGCGAGACCTTCATT
CCCCATGCTTTGTTGCTCCTGTCGCGAAACCCGCTGGCTTTATATATGTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig23132:210..2510-

>mRNA_H-paniculata_contig23132.6224.1 ID=mRNA_H-paniculata_contig23132.6224.1|Name=mRNA_H-paniculata_contig23132.6224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig23132:210..2510- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGTTCTGGTTTGTCGCGAAAAGGCGTCGGCCACGACCAGCTTGCC
TCTCTGGTGGGATATTGTGGCAGTCTATGGCAGCGGCGGGGCGGAGGGGG
GCTTGCCGAGGCGAGAAGAAGGATTTCGTCGACTGTCGGTGGATAGGAAG
ATGGGAGTTCTGGTTTGTCGCGAAAAGGCGTCGGCCACGACCAGCTTGCC
TCTCTGGTGGGATATTGTGGCAGTCTATGGCAGCGGCGGGGCGGAGGGGG
GCTTGCCGAGGCGAGAAGAAGGATTTCGTCGACTGTCGGTGGATAGGAAG
GGCGTGTTAGTTCAACGTCTGTGCGAGGGTGTTCTACAGCGAGCGCCCGA
CTCGGCTACGGCGAAAGAAGGCTTCGACAAAGTCGCTGGACCCGTGTGGA
CAAGGCTGAGGGGACTTTTGCACGCCGTCGGGGGTCTAAACGGGGCGTGT
TAGTTCAACGTCTGTGCGAGGGTGTTCTACAGCGAGCGCCCGACTCGGCT
ACGGCGAAAGAAGGCTTCGACAAAGTCGCTGGACCCGTGTGGACAAGGCT
GAGGGGACTTTTGCACGCCGTCGGGGGTCTAAACGGCGTCCAGCGACAGA
GCCCGAAGGTGGTGGCCGAGAGTTTGCTCTGCGTTAGGCTGTGTCGGGGC
GTTGTGGTCGCGTGCGGGTCTGCAGGTGAACGCAGAACGTTGGCGTGTGG
AGTTGGGGGGCATGGTCGCATTGGATTGATGCAAATTCTTTCACTCTGAC
GTCCAGCGACAGAGCCCGAAGGTGGTGGCCGAGAGTTTGCTCTGCGTTAG
GCTGTGTCGGGGCGTTGTGGTCGCGTGCGGGTCTGCAGGTGAACGCAGAA
CGTTGGCGTGTGGAGTTGGGGGGCATGGTCGCATTGGATTGATGCAAATT
CTTTCACTCTGA
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