mRNA_H-paniculata_contig2313.6223.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2313.6223.1 vs. uniprot
Match: D8LK34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK34_ECTSI) HSP 1 Score: 655 bits (1691), Expect = 2.850e-221 Identity = 430/751 (57.26%), Postives = 507/751 (67.51%), Query Frame = 3
Query: 120 VDLLAALRRPLQRLLHDCSFLQWDNVALFVDGGATEATRWAGGLGFLLEELGISLVFDLQLFTPGRGRIARAQSAKGVTRGIFLITTFVWDVEGAVLNAAKTYGLTEVMVACSVSEEAHACHPHATHLSEEADGRVSFKDVSQQLNVSLVRMLKIEAQSVAASLRYRSSGEDAINNRDDGDFHSSTLPXXXXXXXRQPLHPSDVLVTVFHSPLHVGCFFQAPPFTNSSTGSSYSGAVEVAAAGDGCH---CSAFTLASPVCAKVFPLRRCDLEGGXXXXXXXXXXXXXXVGGSKGRGDGLDGGLLSAEDVPKEERLRYRLLAHALSETLWDQLQLDVGGVGGVFTLGGTSHLIGTTLAAAVGGSSQHSLCRHTMIPYVGTN-----SSGLNPRAPSATEEPYQRRRQASVVIVDRTLDLSAAASRGGSLLQRVMSSLPRAGSTPPSXXXXXXNTSSYLPSASYSSPSLSSRSQAQWSPSASAHQQDVAVILPALAPGLGLPSSCSPFYSLAEAGGLSGKGEXXXXXXRAKGEP-QLEAMKALAGFPWPAPTSLCHPTG----AGRLVHAMSCLGEEEGQAALVAALERCVSENGCVPPPRKRRGSGASIMALATSLAKGSSRAGGPTGDQVCLRNRGIIQVALAAMEAYQRTSTLAGSRWSETVASERVQRQELRDGATAHVVLEQLCASL------EASSSAXXXXXXXXXXXXGQG----CAHDALVLALRGVSLAGGSIGAEEAKSFR 2303
VDLLAA RRPL+RLLH+CSF QW+N+ALF+D GATEA RWAGGLGF+LEELGIS + DLQ F PGR A +S +G+TRGIFL+T FVWDVEGAVL+AA TYGLTEV +ACSVSEEAHACH HA H+SEE GR SF VSQQL VSL RMLKI+AQS ++S R R S + + T+ VLVT+ HSPLHVGCFFQA S GSS V+ G H CSAF+LASP CA+VFPLRRCD EG XXXXXXXXXXXXXX G +SAE+VP+ ERLRYRLLAH L E LWDQL LDV G GGVFTLG TS LIGTT+AA + SL R + G SSG S P RR +ASVV++DR LD++AAAS GGSLLQR++SS+ R G TP +S +P+ PS WSPSA+AHQQDV V+LP L PGLGLP+ + E G XXXXXX G+P +L AMKAL+GFPW AP SLCH G A +VHAM+C GEEEGQAAL++ALE+CVS+NGCVPPPRKRRG G+SIMAL TSLA+G+ RAGG +GD+VC ++RG++QVALAAMEA+QRTS+LAGS WSETVA+ERVQ ++LRDG+T VV+EQLCA+L + SSS+ G A +AL+LALRGVSLAG SIGA++A SFR
Sbjct: 3 VDLLAASRRPLERLLHECSFSQWENIALFLDEGATEAVRWAGGLGFVLEELGISHILDLQAFAPGRSPPAVPES-EGLTRGIFLVTNFVWDVEGAVLHAACTYGLTEVALACSVSEEAHACHSHAAHISEETGGRASFAVVSQQLKVSLERMLKIKAQS-SSSGRRRFSKPSPSSTXXXXXXXTQTIATEAAPHLAANAVDPTVLVTIKHSPLHVGCFFQASTTITSGGGSSVD--VDQPLDSQGQHQKGCSAFSLASPACARVFPLRRCDWEGXXXXXXXXXXXXXXXXXXXXXXXXXETRGHVSAEEVPRGERLRYRLLAHTLVEALWDQLLLDVSGGGGVFTLGDTSRLIGTTVAAVAEDLKRVSLERPAPPGFGGEGGADSASSGRGGGFGSDGAGPAARR-EASVVLIDRNLDVAAAASHGGSLLQRILSSIDRTG-TP----------NSAVPAT----PSSPEAVAIDWSPSAAAHQQDVGVVLPMLTPGLGLPARAAA----VERSGXXXXXXXXXXXXXXXGKPPRLLAMKALSGFPWRAPPSLCHSGGDAGAAAGVVHAMACHGEEEGQAALISALEKCVSDNGCVPPPRKRRGMGSSIMALVTSLARGNPRAGGLSGDRVCFKSRGVLQVALAAMEAHQRTSSLAGSGWSETVAAERVQLRQLRDGSTVDVVMEQLCATLNRAPPMDFSSSSSSPPGGTASLGAGAARTGSSAREALLLALRGVSLAGESIGAQDATSFR 729
BLAST of mRNA_H-paniculata_contig2313.6223.1 vs. uniprot
Match: A0A1V9Z7M6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7M6_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 3.410e-5 Identity = 54/193 (27.98%), Postives = 78/193 (40.41%), Query Frame = 3
Query: 849 DGCHCSAFTLASPVCAKVFPLRRCDLEGGXXXXXXXXXXXXXXVGGSKGRGDGLDGGLLSAEDVPKEERLRYRLLAHALSETLWDQLQLDVGGVGGVFTLGGTSHLIGTTLAAAVGGSSQHSLCRHTMIPYVGTNSSGLNPRAPSATEEPYQRRRQASVVIVDRTLDLSAAASRGGSLLQRVMSSLPRAGSTP 1427
DG S F L P CA FP+ RCD++ + D+P++ R ++LLA L L Q QL V ++ +GGTS +G H+L H LN ++ R AS++++DRTLDL+ S SLL R++ LPRA + P
Sbjct: 165 DGADPSLFVLTHPQCAAAFPIMRCDVKHPSEPWKHVNE--------------------IPPADIPEDNRKTFKLLAQVLGGILM-QWQLQVNEH--IYAMGGTSLKVG------------HTLLHH------------LNELQGEYNMHDVKQWRSASLILIDRTLDLATPMSHQFSLLDRILQQLPRATAAP 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2313.6223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2313.6223.1 >prot_H-paniculata_contig2313.6223.1 ID=prot_H-paniculata_contig2313.6223.1|Name=mRNA_H-paniculata_contig2313.6223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=729bp MVDLLAALRRPLQRLLHDCSFLQWDNVALFVDGGATEATRWAGGLGFLLEback to top mRNA from alignment at H-paniculata_contig2313:190..14141- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2313.6223.1 ID=mRNA_H-paniculata_contig2313.6223.1|Name=mRNA_H-paniculata_contig2313.6223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13952bp|location=Sequence derived from alignment at H-paniculata_contig2313:190..14141- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2313:190..14141- >mRNA_H-paniculata_contig2313.6223.1 ID=mRNA_H-paniculata_contig2313.6223.1|Name=mRNA_H-paniculata_contig2313.6223.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4374bp|location=Sequence derived from alignment at H-paniculata_contig2313:190..14141- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |