prot_H-paniculata_contig23110.6219.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23110.6219.1
Unique Nameprot_H-paniculata_contig23110.6219.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length114
Homology
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BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot
Match: D8LRJ6_ECTSI (Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ6_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 7.400e-42
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0 
Query:    1 EKQITNVSFLAKATGLDELQLLAKELP--QGLSFHLAVFHPYRALPALVEGARLQAKSTLKNADPKLQEERIKNLHNGARAALDDILVTDIPFLHPPSRLALAVLLREGEFNRAKP 114
            E+Q+TNV+ LAKATGLD+LQ+L KEL   QGLSFHLAVFHPYRALPALVEGARL+AK+  +   P  Q ERI  LH+GARAALDDI+VTD+PFLHPPSRLALA LLRE     A P
Sbjct:  185 EEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKT--EGIPP--QPERIMALHDGARAALDDIVVTDLPFLHPPSRLALAALLRESRRMEAPP 296
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BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot
Match: L8GMB5_ACACA (Cyclin, Nterminal domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMB5_ACACA)

HSP 1 Score: 54.3 bits (129), Expect = 3.540e-6
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 0 
Query:    1 EKQITNVSFLAKATGLDELQLLAKELP--QGLSFHLAVFHPYRALPALVEGARLQAKSTLKNADPKLQEERIKNLHNGARAALDDILVTDIPFLHPPSRLALAVLLREGE 108
            E+ +  V  +A      +  +LA E+P  +GL F L V  PY  L   +   +   +ST   A P       + L   AR  ++D+L+TD PFL+PP++LALA L +  E
Sbjct:  134 EEVVLPVDNIAGPVNAKKEDVLAMEIPLLEGLQFDLIVHLPYNPLHGFIIDLK---ESTSPPASP-------EKLQGRARRHINDLLITDAPFLYPPAQLALAALRKASE 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRJ6_ECTSI7.400e-4271.55Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
L8GMB5_ACACA3.540e-633.64Cyclin, Nterminal domain containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 37..113
e-value: 5.0E-14
score: 54.3
IPR031658Cyclin, C-terminal domain 2PFAMPF16899Cyclin_C_2coord: 38..106
e-value: 5.9E-9
score: 36.3
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 38..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23110contigH-paniculata_contig23110:2242..4042 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23110.6219.1mRNA_H-paniculata_contig23110.6219.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23110 2242..4042 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23110.6219.1 ID=prot_H-paniculata_contig23110.6219.1|Name=mRNA_H-paniculata_contig23110.6219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
EKQITNVSFLAKATGLDELQLLAKELPQGLSFHLAVFHPYRALPALVEGA
RLQAKSTLKNADPKLQEERIKNLHNGARAALDDILVTDIPFLHPPSRLAL
AVLLREGEFNRAKP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031658Cyclin_C_2
IPR036915Cyclin-like_sf