mRNA_H-paniculata_contig23110.6219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig23110.6219.1
Unique Name	mRNA_H-paniculata_contig23110.6219.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot
Match: D8LRJ6_ECTSI (Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ6_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 7.400e-42
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 1

Query:    1 EKQITNVSFLAKATGLDELQLLAKELP--QGLSFHLAVFHPYRALPALVEGARLQAKSTLKNADPKLQEERIKNLHNGARAALDDILVTDIPFLHPPSRLALAVLLREGEFNRAKP 342
            E+Q+TNV+ LAKATGLD+LQ+L KEL   QGLSFHLAVFHPYRALPALVEGARL+AK+  +   P  Q ERI  LH+GARAALDDI+VTD+PFLHPPSRLALA LLRE     A P
Sbjct:  185 EEQMTNVNLLAKATGLDDLQILGKELTLLQGLSFHLAVFHPYRALPALVEGARLKAKT--EGIPP--QPERIMALHDGARAALDDIVVTDLPFLHPPSRLALAALLRESRRMEAPP 296

[Close]

BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot
Match: L8GMB5_ACACA (Cyclin, Nterminal domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMB5_ACACA)

HSP 1 Score: 54.3 bits (129), Expect = 3.540e-6
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1

Query:    1 EKQITNVSFLAKATGLDELQLLAKELP--QGLSFHLAVFHPYRALPALVEGARLQAKSTLKNADPKLQEERIKNLHNGARAALDDILVTDIPFLHPPSRLALAVLLREGE 324
            E+ +  V  +A      +  +LA E+P  +GL F L V  PY  L   +   +   +ST   A P       + L   AR  ++D+L+TD PFL+PP++LALA L +  E
Sbjct:  134 EEVVLPVDNIAGPVNAKKEDVLAMEIPLLEGLQFDLIVHLPYNPLHGFIIDLK---ESTSPPASP-------EKLQGRARRHINDLLITDAPFLYPPAQLALAALRKASE 233

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig23110.6219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LRJ6_ECTSI	7.400e-42	71.55	Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]
L8GMB5_ACACA	3.540e-6	33.64	Cyclin, Nterminal domain containing protein n=1 Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig23110	contig	H-paniculata_contig23110:2242..4042 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	62.4
Seed ortholog evalue	1.6e-07
Seed eggNOG ortholog	653948.CCA16120
Preferred name	CCNH
KEGG ko	ko:K02725,ko:K06634
KEGG Pathway	ko03022,ko03050,ko03420,ko04110,map03022,map03050,map03420,map04110
KEGG Module	M00290,M00337,M00340
Hectar predicted targeting category	other localisation
GOs	GO:0000079,GO:0000307,GO:0000428,GO:0001101,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009452,GO:0009628,GO:0009637,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010035,GO:0010118,GO:0010119,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016538,GO:0016591,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019907,GO:0019908,GO:0019914,GO:0022607,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070816,GO:0070985,GO:0071704,GO:0071824,GO:0071840,GO:0071900,GO:0071902,GO:0072593,GO:0080090,GO:0080134,GO:0090304,GO:0090575,GO:0097472,GO:0097659,GO:0098772,GO:0140096,GO:0150005,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990069,GO:1990234,GO:2000070,GO:2000112,GO:2001141
EggNOG free text desc.	positive regulation of phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGs	COG5333@1,KOG2496@2759
EC	3.4.25.1
COG Functional cat.	DKL
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03051,ko03400,ko04147
Exons	3
Model size	342
Cds size	342
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig23110.6219.1	prot_H-paniculata_contig23110.6219.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig23110 2242..4042 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929652.29184-CDS-H-paniculata_contig23110:2241..2328	1622929652.29184-CDS-H-paniculata_contig23110:2241..2328	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23110 2242..2328 -
1691480952.146351-CDS-H-paniculata_contig23110:2241..2328	1691480952.146351-CDS-H-paniculata_contig23110:2241..2328	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23110 2242..2328 -
1622929652.3077736-CDS-H-paniculata_contig23110:3133..3308	1622929652.3077736-CDS-H-paniculata_contig23110:3133..3308	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23110 3134..3308 -
1691480952.1566987-CDS-H-paniculata_contig23110:3133..3308	1691480952.1566987-CDS-H-paniculata_contig23110:3133..3308	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23110 3134..3308 -
1622929652.32048-CDS-H-paniculata_contig23110:3962..4042	1622929652.32048-CDS-H-paniculata_contig23110:3962..4042	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23110 3963..4042 -
1691480952.1645067-CDS-H-paniculata_contig23110:3962..4042	1691480952.1645067-CDS-H-paniculata_contig23110:3962..4042	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23110 3963..4042 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig23110:2242..4042-
coding sequence from alignment at H-paniculata_contig23110:2242..4042-

protein sequence of mRNA_H-paniculata_contig23110.6219.1

>prot_H-paniculata_contig23110.6219.1 ID=prot_H-paniculata_contig23110.6219.1|Name=mRNA_H-paniculata_contig23110.6219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
EKQITNVSFLAKATGLDELQLLAKELPQGLSFHLAVFHPYRALPALVEGA
RLQAKSTLKNADPKLQEERIKNLHNGARAALDDILVTDIPFLHPPSRLAL
AVLLREGEFNRAKP

mRNA from alignment at H-paniculata_contig23110:2242..4042-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig23110.6219.1 ID=mRNA_H-paniculata_contig23110.6219.1|Name=mRNA_H-paniculata_contig23110.6219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1801bp|location=Sequence derived from alignment at H-paniculata_contig23110:2242..4042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGCAGATAACCAACGTAAGCTTTTTGGCCAAGGCTACGGGGCTGGA
TGAGCTTCAACTTCTCGCCAAGGAATTGCCGTTATTTCAGGCGACCCCCC
CCCCCCCCCCCCATGGTCTGATACAATTTATTTTTTGAGTGTACACAACT
GAGATTCTGAGGTCAGCTGCTTAAGCTAGGTACGTTCAATGGAGTTACTA
TATGAGCGTTAGAACTATGGTCAACAAATGACAAGTGGGTTGACTCATGA
ACGTGGCTCTCTGGGTAAATGAATAAGTATTTATTTCTGTTGCGTTCACG
TGAAAACCATCGTCGTATTTACGTGCAGTTCACACGCAAGCGATAGTACT
ATACTTCCTTATAAAGATTGTAGCTGATTTTGTCGTGCTTTGTCTAAGAG
GTGCAAGAAGTCCTGGTGCTGCGGTCCTCATAAGACCAAGTGTTGATATC
TACCACGTAGCACACCCAAGTAACCGTCAAGTCCATTCAAAAGTCAGTTC
ACTTGATGCGCACGCACGCGTTGTCGACCCTATCCCTCGCTGTACATGAT
GCTTCTAAAACCAAGAGTATACCGAGGTTGGCGAAACTCAAACAGACTGT
TATTTTTTTGTTCACAAAGAGAAAGCAAAAACCACGCCAATCCGAAACCG
AACCGAACCGAACCCAGCCAAAGCAAACCAACCTAAACTAAAGCAAACCA
ACCTTACCTCTAACCAAAACCGAACCGAAAAAAGACAGGGACTGAGTTTC
CACCTGGCTGTATTCCACCCGTATCGGGCACTGCCGGCCCTCGTGGAGGG
CGCGCGACTGCAGGCCAAGTCTACGCTGAAAAATGCGGATCCTAAGCTGC
AGGAGGAGAGGATCAAAAACTTGCACAATGGCGCGAGAGCCGCCCTTGAC
GACATATTGGTGAGAGAGGCACGGGGCGGGGAGGCGGCATTTCAGAAGGG
GGGGCATCAACTTGCCTTGTAATATGTCACAATTTATGGTAATTGTAGTA
CACACATTACTATATCTCATCTGGAGATGATGTAGCTCATACCTACAAGC
ATATTCTATTATTGAGCAACTTTATAACCAAGTAGGAATGGGGGGAGATT
AAGTGGATTACTCTTCCATACATTGACCAAACTAGGGGGATAGGTGAAGT
CGGTACTAGTTCTACAGCAAACGAAACAGCAATCATGTACAACACTTTTT
TGTTGATCTCTTCAGGATTTTCCTGTTTGTGTATGATCGTCATGCGGAGG
TGATGCAGCTAGGTTGTATATATCTCCAAGCTGCGTATATCATAGTCATT
AGATAGACATCAGCACCAGAGAGCATGAAAAGGGGGAACTGAAGGGGGGG
GTAGGTACAATACTCAGGTGAACAACGTGTTGTGTTGTTTCGGATGCCCT
TGATGATGCCGACTGAAACTGAGTTACAACGTGTAGTACACGAGTTTATT
AGACACTGCTCTCACGCCCCCCCCTCACCGTTCCCCCCTACAAGGTGCAC
AAAAGTGGGCAGCGCTCGCATGTATAGCAAAATATCCGTCAAGACTATCT
TTTCATAAGTTAGTCAGGTTTAAAATTGAAAAAACGTTGCGAAATAGCCA
TGACCACCAGCAGCAGCAGCACCACCACGTTGTAGGAATTTCTCACGTTG
TAGTGATATCTCGTTGTGTTTTTTGTCATTATTCTCCCTTGTTGAATGTA
CTGCCCACACTCAGGTGACGGATATTCCTTTTCTTCACCCACCGTCGAGA
TTAGCGTTGGCAGTGCTTCTTCGAGAAGGTGAGTTCAATAGGGCGAAACC
C

Coding sequence (CDS) from alignment at H-paniculata_contig23110:2242..4042-

>mRNA_H-paniculata_contig23110.6219.1 ID=mRNA_H-paniculata_contig23110.6219.1|Name=mRNA_H-paniculata_contig23110.6219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig23110:2242..4042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGCAGATAACCAACGTAAGCTTTTTGGCCAAGGCTACGGGGCTGGA
TGAGCTTCAACTTCTCGCCAAGGAATTGCCGAAAAGCAGATAACCAACGT
AAGCTTTTTGGCCAAGGCTACGGGGCTGGATGAGCTTCAACTTCTCGCCA
AGGAATTGCCACAGGGACTGAGTTTCCACCTGGCTGTATTCCACCCGTAT
CGGGCACTGCCGGCCCTCGTGGAGGGCGCGCGACTGCAGGCCAAGTCTAC
GCTGAAAAATGCGGATCCTAAGCTGCAGGAGGAGAGGATCAAAAACTTGC
ACAATGGCGCGAGAGCCGCCCTTGACGACATATTGACAGGGACTGAGTTT
CCACCTGGCTGTATTCCACCCGTATCGGGCACTGCCGGCCCTCGTGGAGG
GCGCGCGACTGCAGGCCAAGTCTACGCTGAAAAATGCGGATCCTAAGCTG
CAGGAGGAGAGGATCAAAAACTTGCACAATGGCGCGAGAGCCGCCCTTGA
CGACATATTGGTGACGGATATTCCTTTTCTTCACCCACCGTCGAGATTAG
CGTTGGCAGTGCTTCTTCGAGAAGGTGAGTTCAATAGGGCGAAACCCGTG
ACGGATATTCCTTTTCTTCACCCACCGTCGAGATTAGCGTTGGCAGTGCT
TCTTCGAGAAGGTGAGTTCAATAGGGCGAAACCC