mRNA_H-paniculata_contig231.6214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig231.6214.1
Unique NamemRNA_H-paniculata_contig231.6214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig231.6214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig231contigH-paniculata_contig231:38305..39286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.1219342-CDS-H-paniculata_contig231:38306..385191622929651.1219342-CDS-H-paniculata_contig231:38306..38519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig231 38307..38519 -
1691480951.6826277-CDS-H-paniculata_contig231:38306..385191691480951.6826277-CDS-H-paniculata_contig231:38306..38519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig231 38307..38519 -
1622929651.139637-CDS-H-paniculata_contig231:39253..392861622929651.139637-CDS-H-paniculata_contig231:39253..39286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig231 39254..39286 -
1691480951.6922479-CDS-H-paniculata_contig231:39253..392861691480951.6922479-CDS-H-paniculata_contig231:39253..39286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig231 39254..39286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig231.6214.1prot_H-paniculata_contig231.6214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig231 38307..39286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig231.6214.1

>prot_H-paniculata_contig231.6214.1 ID=prot_H-paniculata_contig231.6214.1|Name=mRNA_H-paniculata_contig231.6214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
GEQKDELRLYQIRNLWLMFLEELRAGIPPVISESTDVLLRSLQLAHPPNA
RLMQMPGITMNETNVRNVFLLEREDIGALPAL
back to top

mRNA from alignment at H-paniculata_contig231:38305..39286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig231.6214.1 ID=mRNA_H-paniculata_contig231.6214.1|Name=mRNA_H-paniculata_contig231.6214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at H-paniculata_contig231:38305..39286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAACAGAAGGATGAACTCCGTTTGTATCAGGTAACTGCGGGCCGCGG
AACCTGAAATTCGACCCGCCTAGCCGGTCGATCCTGCCTTCAATGCTCGT
AAGCAGGTCCATCTTTTCGTTTACGCGTCAGTCATAGGACGTATCTAAGT
AAATCCACCATGCAAGTTTGCAAGACCTGGGTAACTTGGTAAATCGATCA
TGCCTGCAATCACCTGAGCTCAACACTGGCAAACATGTGTTGAGATAGTT
CTTGTGTGGGTTGAGGACTGCCCTCAACTTGGAACGTATTGGGAATATTC
CGCAGAAGCTGAAGTCGGTCGCGCGAAGTTGACTGTCTTGCTCGGAGGGT
CCAATACCCCAGCTGAATGAACGCGCCCTGCATTTGGTCACCCGACTGCT
AGTGCTCGCATGGAACCGAAGGCCTTGAGTCATCGAGACTGGAGTCACCT
CCGAATGCAGAAAAAATAAAGAGCATTTCAATGGGGTCAAGTTTTGCTCT
TGCCTCGCACCGACGTGGGCTGACAACAGTACCTGGACTGTGCACTTCTT
CTTACATCGAGGTTGTGCTTAAGCTCACGCTACCCAGCTGATATACAGGA
AGTAGATAATAACCGTTTCCACCTCGTCCCTCCTTCTCATTGGGGACGCG
GGGTCAATGTTCTAGTAAATGCGGCGTGCAAATCAAAAGGACACGCCCGC
ATCTCTTGTTCCCCCCGCAACCCCGCTTAATCTCTGCACTGGGTACCCTT
TCCTGGCGTTTGACCAGATCCGGAACCTGTGGCTGATGTTCCTCGAGGAA
CTGAGAGCGGGGATACCTCCAGTGATCTCAGAGTCTACTGACGTTCTACT
TCGCTCGCTCCAGCTAGCACATCCGCCGAACGCGCGACTAATGCAGATGC
CAGGAATCACAATGAACGAGACAAACGTTCGGAACGTTTTTTTGTTGGAG
CGGGAAGACATCGGCGCTCTGCCTGCGTTAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig231:38305..39286-

>mRNA_H-paniculata_contig231.6214.1 ID=mRNA_H-paniculata_contig231.6214.1|Name=mRNA_H-paniculata_contig231.6214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig231:38305..39286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAACAGAAGGATGAACTCCGTTTGTATCAGGGCGAACAGAAGGATGA
ACTCCGTTTGTATCAGATCCGGAACCTGTGGCTGATGTTCCTCGAGGAAC
TGAGAGCGGGGATACCTCCAGTGATCTCAGAGTCTACTGACGTTCTACTT
CGCTCGCTCCAGCTAGCACATCCGCCGAACGCGCGACTAATGCAGATGCC
AGGAATCACAATGAACGAGACAAACGTTCGGAACGTTTTTTTGTTGGAGC
GGGAAGACATCGGCGCTCTGCCTGCGTTAATCCGGAACCTGTGGCTGATG
TTCCTCGAGGAACTGAGAGCGGGGATACCTCCAGTGATCTCAGAGTCTAC
TGACGTTCTACTTCGCTCGCTCCAGCTAGCACATCCGCCGAACGCGCGAC
TAATGCAGATGCCAGGAATCACAATGAACGAGACAAACGTTCGGAACGTT
TTTTTGTTGGAGCGGGAAGACATCGGCGCTCTGCCTGCGTTA
back to top