mRNA_H-paniculata_contig23099.6211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23099.6211.1
Unique NamemRNA_H-paniculata_contig23099.6211.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.810e-17
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    4 QVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPRGVVPSVRSTETAKARRKKRYRR 168
            +VLPGRTHPLNNMSS GGYVLTGIK+  N DPRGV+P  R  + AK  +KKRY+R
Sbjct:  401 EVLPGRTHPLNNMSSCGGYVLTGIKITNNRDPRGVIPKARIPDMAKRHKKKRYKR 455
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: A0A7S2DYA4_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DYA4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.170e-6
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 FQVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPRGVVPSVRSTETAKARRKKRYRR 168
            +QVLPGRTHP  NMSS GGY+LTGIKV  N + + +  S ++ E    R +K  +R
Sbjct:  418 YQVLPGRTHPSMNMSSCGGYILTGIKVHRNDNWKFIDKSEKAAERTLKRDQKGRKR 473
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: A0A1R1YAQ2_9FUNG (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ2_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 1.740e-6
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 FQVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPR 102
            +QVLPGRTHP+ NM+S+GGY+LT I+V  + +PR
Sbjct:  205 YQVLPGRTHPMMNMTSSGGYLLTAIRVFASNEPR 238
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: W6L1B4_9TRYP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6L1B4_9TRYP)

HSP 1 Score: 51.6 bits (122), Expect = 4.100e-6
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 FQVLPGRTHPLNNMSSAGGYVLTGIKVITNPDP 99
            +QVLP RTHP  NMS+AGGY+LT IKV  NP+P
Sbjct:  376 YQVLPQRTHPTVNMSTAGGYLLTAIKVERNPNP 408
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: W6L673_9TRYP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L673_9TRYP)

HSP 1 Score: 50.8 bits (120), Expect = 7.670e-6
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 FQVLPGRTHPLNNMSSAGGYVLTGIKVITNPDP 99
            +QV+P RTHP  NMS+AGGY+LT IKV  NP+P
Sbjct:  376 YQVIPQRTHPTVNMSTAGGYLLTAIKVERNPNP 408
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: S9VDR3_9TRYP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9VDR3_9TRYP)

HSP 1 Score: 50.4 bits (119), Expect = 1.050e-5
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    4 QVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPR 102
            QVL  RTHP  NMS+A GY+LTGIKV  NP+PR
Sbjct:  387 QVLSQRTHPTVNMSTAAGYILTGIKVPVNPNPR 419
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: A0A137QNS7_9AGAR (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QNS7_9AGAR)

HSP 1 Score: 49.3 bits (116), Expect = 2.690e-5
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 FQVLPGRTHPLNNMSSAGGYVLTGIKVITNPD 96
            +QVLPGRTHPL NMS +GG++L  IKV  +PD
Sbjct:  378 YQVLPGRTHPLMNMSGSGGFLLHAIKVYDDPD 409
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: A0A7G2C396_9TRYP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2C396_9TRYP)

HSP 1 Score: 48.9 bits (115), Expect = 3.670e-5
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 QVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPR 102
            QVLP RTHP  NMS+A GY+LT IKV  NP PR
Sbjct:  367 QVLPQRTHPTVNMSTAAGYLLTAIKVPPNPAPR 399
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: Q4D3J0_TRYCC (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=8 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4D3J0_TRYCC)

HSP 1 Score: 48.5 bits (114), Expect = 5.040e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 QVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPR 102
            Q+LP RTHP  NMS+AGGY+LT IK  TN  PR
Sbjct:  397 QILPNRTHPTVNMSTAGGYLLTAIKTETNGIPR 429
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BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Match: A0A7S2RMG0_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMG0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.830e-5
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:    1 FQVLPGRTHPLNNMSSAGGYVLTGIKVI 84
            FQVLPGRTHP+  MS+  GY+LTGIKV+
Sbjct:  247 FQVLPGRTHPVMQMSACSGYILTGIKVL 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23099.6211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LS75_ECTSI3.810e-1769.09tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2DYA4_9STRA1.170e-650.00tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A1R1YAQ2_9FUNG1.740e-661.76tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
W6L1B4_9TRYP4.100e-669.70tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
W6L673_9TRYP7.670e-666.67tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
S9VDR3_9TRYP1.050e-569.70tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A137QNS7_9AGAR2.690e-565.63tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7G2C396_9TRYP3.670e-569.70tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
Q4D3J0_TRYCC5.040e-566.67tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A7S2RMG0_9STRA6.830e-571.43tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23099contigH-paniculata_contig23099:3509..3682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4.4e-14
Seed eggNOG ortholog2880.D8LS75
Preferred nameTRMT6
KEGG rclassRC00017,RC02950
KEGG koko:K03256,ko:K08730
KEGG ReactionR07376
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0023052,GO:0030154,GO:0030488,GO:0031515,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0046483,GO:0048869,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG1416@1,KOG1416@2759
EC2.7.8.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.9437945-CDS-H-paniculata_contig23099:3508..36821622929650.9437945-CDS-H-paniculata_contig23099:3508..3682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23099 3509..3682 +
1691480951.6028652-CDS-H-paniculata_contig23099:3508..36821691480951.6028652-CDS-H-paniculata_contig23099:3508..3682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23099 3509..3682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23099.6211.1prot_H-paniculata_contig23099.6211.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23099 3509..3682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23099.6211.1

>prot_H-paniculata_contig23099.6211.1 ID=prot_H-paniculata_contig23099.6211.1|Name=mRNA_H-paniculata_contig23099.6211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
FQVLPGRTHPLNNMSSAGGYVLTGIKVITNPDPRGVVPSVRSTETAKARR
KKRYRRG*
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mRNA from alignment at H-paniculata_contig23099:3509..3682+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23099.6211.1 ID=mRNA_H-paniculata_contig23099.6211.1|Name=mRNA_H-paniculata_contig23099.6211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig23099:3509..3682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCAGGTCCTACCAGGACGAACGCATCCCTTAAATAACATGTCGAGCGC
CGGCGGCTACGTATTGACGGGCATCAAGGTTATCACCAATCCGGACCCAC
GCGGCGTGGTGCCGTCTGTTAGAAGCACAGAGACGGCTAAGGCGCGCCGT
AAAAAGCGTTACCGGAGAGGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23099:3509..3682+

>mRNA_H-paniculata_contig23099.6211.1 ID=mRNA_H-paniculata_contig23099.6211.1|Name=mRNA_H-paniculata_contig23099.6211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig23099:3509..3682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCAGGTCCTACCAGGACGAACGCATCCCTTAAATAACATGTCGAGCGC
CGGCGGCTACGTATTGACGGGCATCAAGGTTATCACCAATCCGGACCCAC
GCGGCGTGGTGCCGTCTGTTAGAAGCACAGAGACGGCTAAGGCGCGCCGT
AAAAAGCGTTACCGGAGAGGTTGATTCCAGGTCCTACCAGGACGAACGCA
TCCCTTAAATAACATGTCGAGCGCCGGCGGCTACGTATTGACGGGCATCA
AGGTTATCACCAATCCGGACCCACGCGGCGTGGTGCCGTCTGTTAGAAGC
ACAGAGACGGCTAAGGCGCGCCGTAAAAAGCGTTACCGGAGAGGTTGA
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