mRNA_H-paniculata_contig23093.6210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23093.6210.1
Unique NamemRNA_H-paniculata_contig23093.6210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 4.040e-154
Identity = 223/253 (88.14%), Postives = 237/253 (93.68%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VCIMIHSGSRGLGHQVATDALV MEAAMARD I+ NDRQLACAKINSQEGQDYL GMAAAANYAWVNRA MTFLTR+AF+K+FGKT +ELDMH+VYDVSHNIAKVEQH+V  +LKTLLVHRKGATRAFPPHHPL+PVDYQF GQPVIVGGTMGTCSYVLTGTQKGM ETFGSTCHGAGRAKSRNESR+TL YE VL GL +KGISIRVASPKLVMEEAPESYKDVTEVVNTCH+A +S RAVKLRPIAVIKG
Sbjct:  252 QVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 504
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: A0A482S0H0_9ARCH (tRNA-splicing ligase RtcB n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0H0_9ARCH)

HSP 1 Score: 425 bits (1093), Expect = 1.270e-148
Identity = 210/253 (83.00%), Postives = 231/253 (91.30%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VCIMIHSGSRGLGHQVATDAL  MEAAM RD I TNDRQLACA+INS+EGQDYL  MAAAANYAWVNRA+MTFL RQAFAKQF   P +LDM++VYDVSHNIAKVEQH+V  +LKTLLVHRKG+TRAFPPHHPL+PVDYQFIGQPV++GGTMGTCSYVLTGTQKGM ETFGSTCHGAGRA+SRN+SRR LSY+ VL+ L EKGISIRVASPKLVMEEAPESYKDVT+VV+TCHNA IS + +KLRPIAVIKG
Sbjct:   40 QVCIMIHSGSRGLGHQVATDALTAMEAAMVRDHIVTNDRQLACARINSKEGQDYLAAMAAAANYAWVNRASMTFLVRQAFAKQFKVEPDDLDMNVVYDVSHNIAKVEQHLVEGQLKTLLVHRKGSTRAFPPHHPLIPVDYQFIGQPVLIGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAQSRNKSRRNLSYQDVLNSLAEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHNAGISNKCIKLRPIAVIKG 292
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: A0A7S3M965_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M965_9STRA)

HSP 1 Score: 424 bits (1090), Expect = 9.700e-145
Identity = 207/253 (81.82%), Postives = 230/253 (90.91%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VCIMIHSGSRGLGHQVATDAL  MEAAM RDK+ TNDRQLACA+INS EGQDYL GMAAAANYAWVNR++MTFL RQAFAKQF + P +LDMH+VYDVSHNIAKVEQHMV  ++KTLLVHRKG+TRAFPPHHPL+PVDYQFIGQPV++GGTMGTCSYVLTGTQ GM ETFGSTCHGAGRA+SRN SRRTL Y+ VLD L  +GI+IRVASPKLVMEEAPESYKDVT+VV+TCH A IS++ +KLRPIAVIKG
Sbjct:  272 QVCIMIHSGSRGLGHQVATDALTAMEAAMTRDKLVTNDRQLACARINSPEGQDYLAGMAAAANYAWVNRSSMTFLVRQAFAKQFNREPDDLDMHVVYDVSHNIAKVEQHMVDGKMKTLLVHRKGSTRAFPPHHPLIPVDYQFIGQPVLIGGTMGTCSYVLTGTQTGMDETFGSTCHGAGRAQSRNASRRTLEYQEVLDKLASQGIAIRVASPKLVMEEAPESYKDVTQVVDTCHAAGISKKCIKLRPIAVIKG 524
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: UPI0009E47FBE (tRNA-splicing ligase RtcB homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E47FBE)

HSP 1 Score: 415 bits (1066), Expect = 2.530e-142
Identity = 200/253 (79.05%), Postives = 229/253 (90.51%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VC+MIHSGSRGLGHQVATDALV ME AM RDKI+ NDRQLACA+I+SQEG+DYL GMAAAANYAWVNR+TMTFLTRQAF K F  TP +LDMH++YDVSHNIAK+E+HM+  E KTLLVHRKG+TRAFPPHHPL+PVDYQ  GQPV++GGTMGTCSYVLTGT+KGM +TFG+TCHGAGRA SR +SRR L Y+ VLD L+ KGISIRVASPKLVMEEAPESYK+VT+VVNTCH+A IS++A+KLRPIAVIKG
Sbjct:  186 QVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIHSQEGEDYLKGMAAAANYAWVNRSTMTFLTRQAFGKVFKSTPDDLDMHVIYDVSHNIAKIEEHMLDGEQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMKQTFGTTCHGAGRALSRAKSRRNLDYQEVLDALKSKGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISQKAIKLRPIAVIKG 438
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: RTCB_OSTTA (RNA-splicing ligase RtcB homolog n=6 Tax=Ostreococcus TaxID=70447 RepID=RTCB_OSTTA)

HSP 1 Score: 417 bits (1071), Expect = 5.490e-142
Identity = 201/253 (79.45%), Postives = 227/253 (89.72%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VCIMIHSGSRGLGHQVATD+L  ME AM RD IE NDRQLACA+I+SQEGQDYL  MA AANYAWVNR++MTFL RQAFAK FGK P ELDMH+VYDVSHNIAK E+HMV  E+KTLLVHRKG+TRAFPPHHPL+PVDYQ+ GQPV++GGTMGTCSY+LTGT+KGM +TFGSTCHGAGRA+SRN+SR  L YE VL+ L+ KGI+IRVASPKLVMEEAPESYKDVTEVVNTCH+A IS++ VKLRPIAV+KG
Sbjct:  263 QVCIMIHSGSRGLGHQVATDSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMACAANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQYEDVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 515
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: E1Z704_CHLVA (RNA-splicing ligase RtcB homolog n=2 Tax=Chlorella clade TaxID=2511126 RepID=E1Z704_CHLVA)

HSP 1 Score: 415 bits (1066), Expect = 1.270e-141
Identity = 202/253 (79.84%), Postives = 227/253 (89.72%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VC+MIHSGSRGLGHQVATDALV ME AMARD I TNDRQLACA+I SQEGQDYL  MA AANYAWVNR++MTFL RQAFAK FG TP +LDMH+VYDVSHNIAKVE+H+V  +LKTLLVHRKG+TRAFPPHHPL+PVDYQ  GQPV++GGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA+SRN SR  L Y+ VLD L+ KGI+IRVASPKLVMEEAPESYKDV+EVV+TCH+A IS++ VKLRPIAV+KG
Sbjct:  235 QVCVMIHSGSRGLGHQVATDALVGMERAMARDGILTNDRQLACARIGSQEGQDYLTAMACAANYAWVNRSSMTFLCRQAFAKMFGSTPDDLDMHVVYDVSHNIAKVEEHLVDGQLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMGETFGSTCHGAGRARSRNNSRNKLDYQQVLDALKTKGIAIRVASPKLVMEEAPESYKDVSEVVDTCHSAGISKKTVKLRPIAVVKG 487
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: UPI00187DA5D4 (RNA-splicing ligase RtcB homolog n=1 Tax=Bradysia coprophila TaxID=38358 RepID=UPI00187DA5D4)

HSP 1 Score: 408 bits (1048), Expect = 1.110e-140
Identity = 198/253 (78.26%), Postives = 227/253 (89.72%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VC+MIHSGSRG GHQVATDALVQME AM RDKIETNDRQLACA+I S EGQDYL  MAAAAN+AWVNR++MTFLTRQAFAKQF  TP +LDMH++YDVSHN+AK+E+HMV  + KTLLVHRKGATRAFPPHHPL+PVDYQF GQPV+VGGTMGTCSYVLTGT+KGM+ETFGSTCHGAGRA SR +SRR L Y  VL+ ++  GI+IRVASPKLVMEEAPESYK+VT+VV+TCH A IS++ ++LRPIAVIKG
Sbjct:  112 QVCVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIKSTEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKTTPDDLDMHVIYDVSHNVAKIEEHMVDGKQKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVLVGGTMGTCSYVLTGTEKGMSETFGSTCHGAGRALSRAKSRRNLDYLDVLENMKSLGIAIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKCIELRPIAVIKG 364
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: K8FAV9_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FAV9_9CHLO)

HSP 1 Score: 414 bits (1063), Expect = 1.440e-140
Identity = 202/253 (79.84%), Postives = 230/253 (90.91%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +V +MIHSGSRGLGHQVATDALV+ME AMA+D +E NDRQLACA+INSQEG+DYL  MA AANYAWVNR +MTFL RQAFAK F KT ++LDMH+VYDVSHNIAK+E+H+V  ELKTLLVHRKG+TRAFPPHHPL+PVDYQ+ GQPV+VGGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA+SR+ SR+ LSYE VL+ L+ KGISIRVASPKLVMEEAPESYKDVTEVV+TCH+A IS++ VKLRPIAVIKG
Sbjct:  278 QVVVMIHSGSRGLGHQVATDALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTFLCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYEQVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG 530
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BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: A0A7S0WTW0_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WTW0_9CHLO)

HSP 1 Score: 412 bits (1059), Expect = 2.710e-140
Identity = 199/253 (78.66%), Postives = 227/253 (89.72%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VC+MIHSGSRGLGHQVATDALV+ME AMARDKI TNDRQLACA+I+S+EGQDYL  MA AANYAWVNR++MTFLTRQAFAK F  TP +LDMH+VYDVSHNIAKVE+H+V  +   LLVHRKG+TRAFPPHHPL+PVDYQF GQPV++GGTMGTCSYVLTGT++G TETFGSTCHGAGRA+SRN SR  L Y+ VLD L+ KGI+IRVASPKLVMEEAPESYKDV+EVV+TCH A IS++ VKLRP+AVIKG
Sbjct:  254 QVCVMIHSGSRGLGHQVATDALVEMERAMARDKIATNDRQLACARISSREGQDYLAAMACAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHVVYDVSHNIAKVEEHIVDGKRMRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEQGFTETFGSTCHGAGRARSRNSSRNKLDYQEVLDALKAKGIAIRVASPKLVMEEAPESYKDVSEVVDTCHQAGISKKCVKLRPVAVIKG 506
[Close]
BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Match: A0A7S3GU52_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3GU52_9STRA)

HSP 1 Score: 405 bits (1042), Expect = 3.700e-140
Identity = 197/253 (77.87%), Postives = 225/253 (88.93%), Query Frame = 1 
Query:    1 KVCIMIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDYLGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIAKVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMGTCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKGISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG 759
            +VCIMIHSGSRGLGHQVATD+LV+ME AM+RD I+TNDRQLACA+INS EGQ+Y+ GMAAAANYAWVNR++MTFLTRQAFAK F ++P++LDMH++YDVSHNIAKVE+HMV    K LLVHRKG+TRAFPPHHPL+PVDYQ  GQPVIVGGTMGTCSYVLTGT  GM ETFGSTCHGAGRA SRN+SR  L Y  VL  L + GISIRVASPKL+MEEAPESYKDVT+VV TCH+ADIS+ A+KL+PIAV+KG
Sbjct:   86 QVCIMIHSGSRGLGHQVATDSLVEMERAMSRDNIQTNDRQLACARINSVEGQNYMKGMAAAANYAWVNRSSMTFLTRQAFAKVFNQSPEDLDMHVIYDVSHNIAKVEEHMVDGHCKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVIVGGTMGTCSYVLTGTDTGMRETFGSTCHGAGRALSRNKSRNNLDYGDVLKRLEDMGISIRVASPKLIMEEAPESYKDVTQVVQTCHDADISKMAIKLKPIAVVKG 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23093.6210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS68_ECTSI4.040e-15488.14RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpu... [more]
A0A482S0H0_9ARCH1.270e-14883.00tRNA-splicing ligase RtcB n=1 Tax=archaeon TaxID=1... [more]
A0A7S3M965_9STRA9.700e-14581.82RNA-splicing ligase RtcB homolog n=1 Tax=Spumella ... [more]
UPI0009E47FBE2.530e-14279.05tRNA-splicing ligase RtcB homolog n=1 Tax=Orbicell... [more]
RTCB_OSTTA5.490e-14279.45RNA-splicing ligase RtcB homolog n=6 Tax=Ostreococ... [more]
E1Z704_CHLVA1.270e-14179.84RNA-splicing ligase RtcB homolog n=2 Tax=Chlorella... [more]
UPI00187DA5D41.110e-14078.26RNA-splicing ligase RtcB homolog n=1 Tax=Bradysia ... [more]
K8FAV9_9CHLO1.440e-14079.84RNA-splicing ligase RtcB homolog n=1 Tax=Bathycocc... [more]
A0A7S0WTW0_9CHLO2.710e-14078.66RNA-splicing ligase RtcB homolog n=1 Tax=Chlamydom... [more]
A0A7S3GU52_9STRA3.700e-14077.87Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23093contigH-paniculata_contig23093:1479..3736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score446.8
Seed ortholog evalue6.6e-123
Seed eggNOG ortholog2880.D7FS68
Preferred nameRTCB
KEGG koko:K14415
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000378,GO:0000394,GO:0000968,GO:0000971,GO:0001701,GO:0001890,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008033,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016070,GO:0016874,GO:0016886,GO:0017166,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031325,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0040025,GO:0042175,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0072669,GO:0080090,GO:0090304,GO:0098827,GO:0140098,GO:1901360,GO:1903326,GO:1903328,GO:2000235,GO:2000237
EggNOG free text desc.RNA ligase (ATP) activity
EggNOG OGsCOG1690@1,KOG3833@2759
EC6.5.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons4
Model size762
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23093.6210.1prot_H-paniculata_contig23093.6210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23093 1479..3724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.8327687-CDS-H-paniculata_contig23093:1478..16771622929650.8327687-CDS-H-paniculata_contig23093:1478..1677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 1479..1677 -
1691480951.5477293-CDS-H-paniculata_contig23093:1478..16771691480951.5477293-CDS-H-paniculata_contig23093:1478..1677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 1479..1677 -
1622929650.847268-CDS-H-paniculata_contig23093:2583..28311622929650.847268-CDS-H-paniculata_contig23093:2583..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 2584..2831 -
1691480951.557292-CDS-H-paniculata_contig23093:2583..28311691480951.557292-CDS-H-paniculata_contig23093:2583..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 2584..2831 -
1622929650.8660889-CDS-H-paniculata_contig23093:3152..33201622929650.8660889-CDS-H-paniculata_contig23093:3152..3320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 3153..3320 -
1691480951.5676186-CDS-H-paniculata_contig23093:3152..33201691480951.5676186-CDS-H-paniculata_contig23093:3152..3320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 3153..3320 -
1622929650.8787072-CDS-H-paniculata_contig23093:3589..37241622929650.8787072-CDS-H-paniculata_contig23093:3589..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 3590..3724 -
1691480951.5751762-CDS-H-paniculata_contig23093:3589..37241691480951.5751762-CDS-H-paniculata_contig23093:3589..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23093 3590..3724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.90014-UTR-H-paniculata_contig23093:3724..37361622929650.90014-UTR-H-paniculata_contig23093:3724..3736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23093 3725..3736 -
1691480951.5866325-UTR-H-paniculata_contig23093:3724..37361691480951.5866325-UTR-H-paniculata_contig23093:3724..3736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23093 3725..3736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23093.6210.1

>prot_H-paniculata_contig23093.6210.1 ID=prot_H-paniculata_contig23093.6210.1|Name=mRNA_H-paniculata_contig23093.6210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MIHSGSRGLGHQVATDALVQMEAAMARDKIETNDRQLACAKINSQEGQDY
LGGMAAAANYAWVNRATMTFLTRQAFAKQFGKTPQELDMHLVYDVSHNIA
KVEQHMVGDELKTLLVHRKGATRAFPPHHPLVPVDYQFIGQPVIVGGTMG
TCSYVLTGTQKGMTETFGSTCHGAGRAKSRNESRRTLSYETVLDGLREKG
ISIRVASPKLVMEEAPESYKDVTEVVNTCHNADISRRAVKLRPIAVIKG*
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mRNA from alignment at H-paniculata_contig23093:1479..3736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23093.6210.1 ID=mRNA_H-paniculata_contig23093.6210.1|Name=mRNA_H-paniculata_contig23093.6210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2258bp|location=Sequence derived from alignment at H-paniculata_contig23093:1479..3736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTTTGCATTATGATTCACAGCGGAAGCCGAGGACTGGGGCACCAGGT
TGCGACAGACGCTCTTGTGCAGATGGAGGCGGCTATGGCGCGAGATAAGA
TCGAGACCAATGATCGACAGCTGGCTTGTGCCAAAATCAACAGCCAGGTG
AGAGTGTGTTCTTAACTGCTTCGTAATTTTTTCTGAATTTTCTAAATATT
GAAGGGACAAAATGGAAACGCTCGAGGATAATAACACCAAGTGCTCACCT
TTTGATTCACCACCTTTCCCAAGACACTCCTTGAAAACAACGAAGCACTG
GCCCCATAGCCCTTCCACCTGCCTCGAACGTGGGCCGATCCGCGTTGAGT
AGACGAATAGGATGACAAGTCCAACTCCTCCAGCTTGTGTCCGTTTTTGG
ATCGTTTTGGTGACAGGAGGGACAGGATTACTTGGGGGGGATGGCGGCTG
CTGCCAACTACGCGTGGGTAAATCGAGCTACAATGACGTTCCTCACCAGA
CAGGCGTTCGCGAAGCAGTTCGGGAAAACACCGCAAGAGTTAGATATGCA
CTTGGTCTACGACGTATCGCACAACATCGCAAAGGTAAATATTCATGTGT
GACAACGTGGCGACGCAACATAATGGTACTATATTTTAGTACTGGCGAAT
CTCGCGTTCGTTGTAAGTGTGCTATCGAATCGTGGTTTATCGCTGGTGCT
GGACGTCACCCGGACGCGCGACGTTTCTCTCTCTTTCTCTCTCCCGCCTG
CTCTCTGGAATGCTCATTTTGTGGATAATAACTATAAGCAAAGTAATCCA
GCAGATTGAAGATGTCAAGGATACCTCCGTTTGTTCTACAATTACCCCCC
ATCATGTCTCTCACACGTACACATGCCCTCTCGTTCCTTCCCAATTTATC
CCCAGGTGGAGCAACACATGGTGGGCGACGAGCTGAAGACGTTGCTGGTG
CACCGAAAGGGGGCGACCCGTGCCTTTCCCCCTCACCACCCTCTTGTCCC
AGTCGACTACCAGTTCATAGGGCAGCCTGTCATTGTCGGGGGCACCATGG
GCACGTGCAGCTACGTCTTGACGGGGACACAGAAGGGAATGACCGAGACA
TTCGGCAGTACCTGTCACGGTGCTGGTCGCGCAAAGAGCAGAAATGAATC
GAGGTGAGGGAGGTACTGCCAAACTTGAACTTGTTGGCATGGGAATTGCT
CCCTGGCGGGGTGGTGATTGGGCATACTATCTGTATTCTTTTAATGAGTA
ATTCAATACTCTGCGTGCATCGATAAGAGACGTGAAGGCGCACTGTCTCC
AGCACGCGTGCATTGTCTTTGAGGTTTCGTTGAGATAGCCTTTCAAATTG
CAATTACTGACGGAACGACTGCGTATATTGATAGGTGGGGATCGGTTCTC
AGTTAGTGATGACTGACTGCCGACGTGTGCTTGAAGGCAAATCGGACGTT
GGGATGCGGTGGTCCCCTAGTGCTCTAGGGCAAAACTGTTACAAATTACA
CTGTCCATCGATAAAATTCGACATTTTGCCGTTATCTCTTGTTCCGTCCG
TTGGGTATACTGCCAACGGCCCACATTCTCCGCACGCGCTGCACACAACT
GTGCGCAGGTGTGACTTGGTCCGAGTACCCCCACACACGTCAATTCGGTC
GGTTTGTGGAATCACTCACACAGTAGTAGAGTACTAGATTGGCTGAGCAT
ACCTCGAATTTTGATTTATGGTTGCTCGTAATCGCATGTTTTTCTTGGTT
ACTTGACTGATTTTTTTCAAACCATACTCCCATGTTGTTGCCGATGTTAT
CTGTTGTGTTGTTGCAATTGTCCTTGGCAAGAGGCGTAAGTGTTTTTATA
GCTTGTAAAACTCGCGGTGCGCGCACAGTAGAAAAGGACGATTAGCCGTC
GGAGATTGCTAGGATAGGGTCAAAGCTCCGTCCTCTCGAGTACGCGTGGT
TTATGGCCTAACGATTGCGGCATGCAAAATGTGAGTACATCTCCCCCTCC
CCCCCCTTATGCGTGCTCGTCTTCATACGTGTGATGCATCGCTACCTGTT
TATTCGAAGACGAACTCTGAGCTATGAGACAGTTCTAGACGGTTTGAGGG
AAAAAGGCATCTCCATCCGAGTCGCGAGCCCTAAGCTTGTGATGGAGGAG
GCGCCCGAGAGCTACAAGGACGTCACGGAAGTAGTAAATACTTGTCACAA
CGCTGATATTTCGAGGAGAGCCGTCAAGCTACGACCGATCGCAGTGATCA
AGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23093:1479..3736-

>mRNA_H-paniculata_contig23093.6210.1 ID=mRNA_H-paniculata_contig23093.6210.1|Name=mRNA_H-paniculata_contig23093.6210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig23093:1479..3736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCACAGCGGAAGCCGAGGACTGGGGCACCAGGTTGCGACAGACGC
TCTTGTGCAGATGGAGGCGGCTATGGCGCGAGATAAGATCGAGACCAATG
ATCGACAGCTGGCTTGTGCCAAAATCAACAGCCAGATGATTCACAGCGGA
AGCCGAGGACTGGGGCACCAGGTTGCGACAGACGCTCTTGTGCAGATGGA
GGCGGCTATGGCGCGAGATAAGATCGAGACCAATGATCGACAGCTGGCTT
GTGCCAAAATCAACAGCCAGGAGGGACAGGATTACTTGGGGGGGATGGCG
GCTGCTGCCAACTACGCGTGGGTAAATCGAGCTACAATGACGTTCCTCAC
CAGACAGGCGTTCGCGAAGCAGTTCGGGAAAACACCGCAAGAGTTAGATA
TGCACTTGGTCTACGACGTATCGCACAACATCGCAAAGGAGGGACAGGAT
TACTTGGGGGGGATGGCGGCTGCTGCCAACTACGCGTGGGTAAATCGAGC
TACAATGACGTTCCTCACCAGACAGGCGTTCGCGAAGCAGTTCGGGAAAA
CACCGCAAGAGTTAGATATGCACTTGGTCTACGACGTATCGCACAACATC
GCAAAGGTGGAGCAACACATGGTGGGCGACGAGCTGAAGACGTTGCTGGT
GCACCGAAAGGGGGCGACCCGTGCCTTTCCCCCTCACCACCCTCTTGTCC
CAGTCGACTACCAGTTCATAGGGCAGCCTGTCATTGTCGGGGGCACCATG
GGCACGTGCAGCTACGTCTTGACGGGGACACAGAAGGGAATGACCGAGAC
ATTCGGCAGTACCTGTCACGGTGCTGGTCGCGCAAAGAGCAGAAATGAAT
CGAGGTGGAGCAACACATGGTGGGCGACGAGCTGAAGACGTTGCTGGTGC
ACCGAAAGGGGGCGACCCGTGCCTTTCCCCCTCACCACCCTCTTGTCCCA
GTCGACTACCAGTTCATAGGGCAGCCTGTCATTGTCGGGGGCACCATGGG
CACGTGCAGCTACGTCTTGACGGGGACACAGAAGGGAATGACCGAGACAT
TCGGCAGTACCTGTCACGGTGCTGGTCGCGCAAAGAGCAGAAATGAATCG
AGACGAACTCTGAGCTATGAGACAGTTCTAGACGGTTTGAGGGAAAAAGG
CATCTCCATCCGAGTCGCGAGCCCTAAGCTTGTGATGGAGGAGGCGCCCG
AGAGCTACAAGGACGTCACGGAAGTAGTAAATACTTGTCACAACGCTGAT
ATTTCGAGGAGAGCCGTCAAGCTACGACCGATCGCAGTGATCAAGGGGTG
AACGAACTCTGAGCTATGAGACAGTTCTAGACGGTTTGAGGGAAAAAGGC
ATCTCCATCCGAGTCGCGAGCCCTAAGCTTGTGATGGAGGAGGCGCCCGA
GAGCTACAAGGACGTCACGGAAGTAGTAAATACTTGTCACAACGCTGATA
TTTCGAGGAGAGCCGTCAAGCTACGACCGATCGCAGTGATCAAGGGGTGA
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