mRNA_H-paniculata_contig2309.6207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2309.6207.1
Unique NamemRNA_H-paniculata_contig2309.6207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A6H5L1Y5_9PHAE (MGS-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 5.580e-48
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            K+TRALLSVSDK GLVE AT+LAS GVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHE AMKSQGMK   ++V+
Sbjct:   17 KVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEEAMKSQGMKAIDLVVL 116
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A382QKS3_9ZZZZ (MGS-like domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382QKS3_9ZZZZ)

HSP 1 Score: 139 bits (349), Expect = 1.230e-39
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            KI RAL+SVSDK GLV FA  LA  GVE+LSTGGTA+AMR AGLTV DVSEYTGFPEMMDGRVKTLHP VHGG++H+R N+EH+AA +  G+    +LV+
Sbjct:    3 KIQRALISVSDKEGLVPFAQVLADAGVEILSTGGTARAMREAGLTVIDVSEYTGFPEMMDGRVKTLHPKVHGGLLHLRDNDEHKAAAEEHGIDPIDLLVV 102
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A3D1IVG7_9BACT (Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3D1IVG7_9BACT)

HSP 1 Score: 136 bits (342), Expect = 3.040e-39
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            KI RAL+SVSDK GLV FA  LA+ GVE+LSTGGTA+ MR AGL V DVS+YTGFPEMMDGRVKTLHP VHGG++H+RGN EHEAA    G++   ++V+
Sbjct:    3 KIQRALISVSDKDGLVPFAQTLAAAGVEILSTGGTARVMREAGLEVKDVSDYTGFPEMMDGRVKTLHPKVHGGLLHLRGNAEHEAACAEHGIQPIDLVVV 102
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A383A2I4_9ZZZZ (MGS-like domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383A2I4_9ZZZZ)

HSP 1 Score: 132 bits (332), Expect = 3.410e-38
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGM 276
            KI RAL+SVSDK GLV FA  LA  GVE+LSTGGTA+ MR AGL V DVS+YTGFPEMMDGRVKTLHP VHGG++H+R N+EH+AA +  G+
Sbjct:    3 KIQRALISVSDKDGLVPFAQTLAEAGVEILSTGGTARLMREAGLAVIDVSDYTGFPEMMDGRVKTLHPKVHGGLLHLRDNDEHKAAAEEHGI 94
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A6N6PXM9_9BACT (Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6PXM9_9BACT)

HSP 1 Score: 135 bits (339), Expect = 6.380e-38
Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            KI RALLSVSDK+GLV+FA  LAS GVELLSTGGTA+A+R AGL V D+SE+TGFPEM+DGRVKTLHP VHGG++++RGN EHEA ++  G+    ++V+
Sbjct:    3 KIQRALLSVSDKTGLVDFARVLASAGVELLSTGGTARAIRDAGLPVRDISEHTGFPEMLDGRVKTLHPKVHGGLLYLRGNPEHEATVREHGIAPIDLVVV 102
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A537UM19_9PROT (Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UM19_9PROT)

HSP 1 Score: 138 bits (348), Expect = 2.410e-37
Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            ++TRALLSVSDKSGL+EFA ALA  G++L+STGGTAKA+ AAGL VTDVSE TGFPEMMDGRVKTLHP VHGG++ +R N EH+ AMKS G+    +LV+
Sbjct:    5 RVTRALLSVSDKSGLIEFARALAGYGIDLVSTGGTAKAIAAAGLKVTDVSELTGFPEMMDGRVKTLHPKVHGGLLAIRDNAEHKQAMKSHGIAPIDLLVV 104
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A537X6B6_9PROT (Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537X6B6_9PROT)

HSP 1 Score: 135 bits (339), Expect = 3.650e-37
Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            ++TRALLSVSDK+GL+EFA ALA  GVEL+STGGTAK + AAGL V+DVSE TGFPEMMDGRVKTLHP VHGG++ +R N+EH  AMK+ G+    +LV+
Sbjct:    7 RVTRALLSVSDKTGLIEFARALAEHGVELVSTGGTAKTIMAAGLKVSDVSELTGFPEMMDGRVKTLHPKVHGGLLAIRDNKEHAQAMKAHGIAPIDLLVV 106
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A358EPF5_9BACT (Bifunctional purine biosynthesis protein PurH n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A358EPF5_9BACT)

HSP 1 Score: 140 bits (352), Expect = 4.320e-37
Identity = 70/100 (70.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            KI RAL+SVSDK GLV FA  LA  GVE+LSTGGTA+AMR AGL V DVS+YTGFPEMMDGRVKTLHP VHGG++H+RGN EHEAA +  G+K   ++V+
Sbjct:    3 KIARALISVSDKEGLVPFAQTLAQAGVEILSTGGTARAMREAGLEVMDVSDYTGFPEMMDGRVKTLHPKVHGGLLHLRGNAEHEAACEEHGIKPIDLVVV 102
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A7S1UAS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 7.010e-37
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:    4 ITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            + RALLSVSDK+GLV FAT LAS GVELLSTGGTAK +R AGLTV DVSEYT  PEMMDGRVKTLHP VHGGI++VRGN +HEA +++ G K   ++V+
Sbjct:   18 VRRALLSVSDKTGLVPFATKLASHGVELLSTGGTAKKLREAGLTVIDVSEYTQAPEMMDGRVKTLHPLVHGGILYVRGNAQHEADLEANGGKPIDMIVL 116
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BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Match: A0A520QKD0_9BACT (Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (Fragment) n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A520QKD0_9BACT)

HSP 1 Score: 136 bits (342), Expect = 8.100e-37
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVSEYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI 300
            KI RAL+SVSDK GLV FA  LA+ GVE+LSTGGTA+ MR AGL V DVS+YTGFPEMMDGRVKTLHP VHGG++H+RGN EHEAA    G++   ++V+
Sbjct:    3 KIKRALISVSDKDGLVPFAQTLAAAGVEILSTGGTARVMREAGLEVMDVSDYTGFPEMMDGRVKTLHPKVHGGLLHLRGNTEHEAACAEHGIQPIDLVVV 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2309.6207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Y5_9PHAE5.580e-4888.00MGS-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A382QKS3_9ZZZZ1.230e-3970.00MGS-like domain-containing protein (Fragment) n=1 ... [more]
A0A3D1IVG7_9BACT3.040e-3968.00Bifunctional phosphoribosylaminoimidazolecarboxami... [more]
A0A383A2I4_9ZZZZ3.410e-3870.65MGS-like domain-containing protein (Fragment) n=1 ... [more]
A0A6N6PXM9_9BACT6.380e-3867.00Bifunctional phosphoribosylaminoimidazolecarboxami... [more]
A0A537UM19_9PROT2.410e-3770.00Bifunctional phosphoribosylaminoimidazolecarboxami... [more]
A0A537X6B6_9PROT3.650e-3768.00Bifunctional phosphoribosylaminoimidazolecarboxami... [more]
A0A358EPF5_9BACT4.320e-3770.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A7S1UAS9_9STRA7.010e-3770.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A520QKD0_9BACT8.100e-3768.00Bifunctional phosphoribosylaminoimidazolecarboxami... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2309contigH-paniculata_contig2309:3669..3980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog2880.D8LKS8
Preferred nameATIC
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
EggNOG free text desc.IMP cyclohydrolase activity
EggNOG OGsCOG0138@1,KOG2555@2759
EC2.1.2.3,3.5.4.10
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.6840115-CDS-H-paniculata_contig2309:3668..39801622929650.6840115-CDS-H-paniculata_contig2309:3668..3980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2309 3669..3980 -
1691480951.5135405-CDS-H-paniculata_contig2309:3668..39801691480951.5135405-CDS-H-paniculata_contig2309:3668..3980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2309 3669..3980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2309.6207.1prot_H-paniculata_contig2309.6207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2309 3669..3980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2309.6207.1

>prot_H-paniculata_contig2309.6207.1 ID=prot_H-paniculata_contig2309.6207.1|Name=mRNA_H-paniculata_contig2309.6207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
KITRALLSVSDKSGLVEFATALASKGVELLSTGGTAKAMRAAGLTVTDVS
EYTGFPEMMDGRVKTLHPSVHGGIMHVRGNEEHEAAMKSQGMKVQYILVI
RYR*
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mRNA from alignment at H-paniculata_contig2309:3669..3980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2309.6207.1 ID=mRNA_H-paniculata_contig2309.6207.1|Name=mRNA_H-paniculata_contig2309.6207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig2309:3669..3980- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATCACCCGCGCGCTGCTCTCGGTATCGGATAAGTCGGGGCTCGTGGA
GTTTGCGACCGCCCTCGCGAGCAAGGGCGTGGAGCTGCTGTCGACCGGCG
GCACGGCGAAGGCGATGCGAGCGGCGGGCCTGACGGTGACCGACGTGTCT
GAGTACACGGGCTTTCCCGAGATGATGGACGGGCGGGTGAAGACTCTGCA
CCCCAGCGTCCACGGGGGTATCATGCACGTGCGCGGCAACGAGGAGCACG
AAGCCGCCATGAAGTCTCAGGGAATGAAGGTACAATATATCTTAGTTATT
CGATATAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2309:3669..3980-

>mRNA_H-paniculata_contig2309.6207.1 ID=mRNA_H-paniculata_contig2309.6207.1|Name=mRNA_H-paniculata_contig2309.6207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig2309:3669..3980- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATCACCCGCGCGCTGCTCTCGGTATCGGATAAGTCGGGGCTCGTGGA
GTTTGCGACCGCCCTCGCGAGCAAGGGCGTGGAGCTGCTGTCGACCGGCG
GCACGGCGAAGGCGATGCGAGCGGCGGGCCTGACGGTGACCGACGTGTCT
GAGTACACGGGCTTTCCCGAGATGATGGACGGGCGGGTGAAGACTCTGCA
CCCCAGCGTCCACGGGGGTATCATGCACGTGCGCGGCAACGAGGAGCACG
AAGCCGCCATGAAGTCTCAGGGAATGAAGGTACAATATATCTTAGTTATT
CGATATAGGTGAAAGATCACCCGCGCGCTGCTCTCGGTATCGGATAAGTC
GGGGCTCGTGGAGTTTGCGACCGCCCTCGCGAGCAAGGGCGTGGAGCTGC
TGTCGACCGGCGGCACGGCGAAGGCGATGCGAGCGGCGGGCCTGACGGTG
ACCGACGTGTCTGAGTACACGGGCTTTCCCGAGATGATGGACGGGCGGGT
GAAGACTCTGCACCCCAGCGTCCACGGGGGTATCATGCACGTGCGCGGCA
ACGAGGAGCACGAAGCCGCCATGAAGTCTCAGGGAATGAAGGTACAATAT
ATCTTAGTTATTCGATATAGGTGA
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