prot_H-paniculata_contig2309.6208.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2309.6208.1
Unique Nameprot_H-paniculata_contig2309.6208.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length587
Homology
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BLAST of mRNA_H-paniculata_contig2309.6208.1 vs. uniprot
Match: A0A6H5L1W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W2_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.720e-40
Identity = 104/169 (61.54%), Postives = 119/169 (70.41%), Query Frame = 0 
Query:  338 VAAEEFAEIAWRCLGSGLPEIALEA---YSLYVRAAASGQSP-VIPLRQHHP-AAPPAGSESSRDNNQIVRAEAETSLIVTAARAHIAMGGVLDGLALLDDAAGLSGSNA------RARGKWGGDGEAGAGAAILGDNDASVIVEELCVSGGELGLRAALRLKERLAEE 495
            VAAEEFAE+A RCLGS LPEIALEA   +SLYVRA ASG  P    L   +P       ++   D +   R +AE SL+VTAARAHIAMGGVLDG+AL+DDA  + G  A      RA G+WGGDG AGAG A LGD DAS + EELCVSGG+ GLRAALRL+ERLAEE
Sbjct:  372 VAAEEFAELAARCLGSALPEIALEASVAHSLYVRAEASGLQPRTTALLPEYPLTTDDVDTQDDDDGHWRRRWDAEVSLLVTAARAHIAMGGVLDGIALIDDATAIGGDGASAAAALRAAGRWGGDGVAGAGLARLGDGDASTVAEELCVSGGDTGLRAALRLRERLAEE 540
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BLAST of mRNA_H-paniculata_contig2309.6208.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.950e-6
Identity = 52/136 (38.24%), Postives = 58/136 (42.65%), Query Frame = 0 
Query:  496 NRHLSREAKLLLLEALAVATGRDLG-VVSETT--GRGLTFPGAPSF----------------------------TEADPAWFDILRANAHRAWDGAA-----------------TSGGXXXXXXGVGSGWVPIGAR 583
            NR L+REA+L LLEALAVATGR LG VV ET   GRGLT                                    + DPAWF+ LRA A RAW G                    +GG      G   GWVP+GAR
Sbjct:   15 NRGLTREARLRLLEALAVATGRALGNVVFETAAAGRGLTLAPLSKIKQXXXXXXXXXXXXXXXXXXXASATAIVAQPDPAWFETLRATARRAWSGGGGCDADGNDLEAPPRLVPEAGGFGCGNGG--GGWVPVGAR 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2309.6208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1W2_9PHAE8.720e-4061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L195_9PHAE3.950e-638.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 482..509

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2309contigH-paniculata_contig2309:9863..16987 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2309.6208.1mRNA_H-paniculata_contig2309.6208.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2309 9694..16987 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2309.6208.1 ID=prot_H-paniculata_contig2309.6208.1|Name=mRNA_H-paniculata_contig2309.6208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=587bp
MLLRTMVAALDIYGQDSFFCTETAFRTEGLLLTVLWNYYCCSGFAVDGVR
ISSPCQAWVGSTAAPAADLRAHLSTVVLRPRGSGHAFSGQGDRRRGLVMR
SASGRRNSRRLSSDILRSVPMLRDQQEAVDKGQERAALARKKAQEEIAAA
AGSIPVVTAVTTATAAAPTVAGARDGSTPVLPPGSTSSVLNIGGGNDGIS
ITVTLTSAEREGTITSVASTMTGDSSRGGTPGAMAAVGSESGNARNKKNR
SRRRRGKPRPAAPVARAEAVELLRQAVTRFRAAQISSSSLVSPSSASVHG
GGDGSGGGASEGHAAAASAGGGSGTNEAALVEKDPGTVAAEEFAEIAWRC
LGSGLPEIALEAYSLYVRAAASGQSPVIPLRQHHPAAPPAGSESSRDNNQ
IVRAEAETSLIVTAARAHIAMGGVLDGLALLDDAAGLSGSNARARGKWGG
DGEAGAGAAILGDNDASVIVEELCVSGGELGLRAALRLKERLAEENRHLS
REAKLLLLEALAVATGRDLGVVSETTGRGLTFPGAPSFTEADPAWFDILR
ANAHRAWDGAATSGGGGGGSGGVGSGWVPIGARFGAG
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