mRNA_H-paniculata_contig23084.6205.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23084.6205.1
Unique NamemRNA_H-paniculata_contig23084.6205.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23084.6205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23084contigH-paniculata_contig23084:364..1529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1166
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23084.6205.1prot_H-paniculata_contig23084.6205.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23084 490..1251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.418129-UTR-H-paniculata_contig23084:363..4891622929650.418129-UTR-H-paniculata_contig23084:363..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23084 364..489 +
1691480951.433345-UTR-H-paniculata_contig23084:363..4891691480951.433345-UTR-H-paniculata_contig23084:363..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23084 364..489 +
1622929650.4471292-UTR-H-paniculata_contig23084:1251..15291622929650.4471292-UTR-H-paniculata_contig23084:1251..1529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23084 1252..1529 +
1691480951.449085-UTR-H-paniculata_contig23084:1251..15291691480951.449085-UTR-H-paniculata_contig23084:1251..1529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23084 1252..1529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.4322064-CDS-H-paniculata_contig23084:489..12511622929650.4322064-CDS-H-paniculata_contig23084:489..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23084 490..1251 +
1691480951.4414384-CDS-H-paniculata_contig23084:489..12511691480951.4414384-CDS-H-paniculata_contig23084:489..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23084 490..1251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23084.6205.1

>prot_H-paniculata_contig23084.6205.1 ID=prot_H-paniculata_contig23084.6205.1|Name=mRNA_H-paniculata_contig23084.6205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
MVPVLPKLFYISPISCSILSAGLDWNTPDAFDDTQALLCFDRVRALDSAF
TRVISPLREYMVTRSELVADNAGMFSNLFDRDLRTWTESMTPAFRATLAY
LETGYMSVEAQWATTDGKRSAPMGGSGSGRLAKTNKLTPVVKQNMTCWSW
LKNTCRNSDASCRFIHVAGIGRTEDEVKAARQEREQDGGRGTGVDAGRGP
GAPAGRGRGSASQSLASRRQGEGRGGGSKAGSGAGLAGTRRGLQVRGRSG
VAQ*
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mRNA from alignment at H-paniculata_contig23084:364..1529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23084.6205.1 ID=mRNA_H-paniculata_contig23084.6205.1|Name=mRNA_H-paniculata_contig23084.6205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-paniculata_contig23084:364..1529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTCCCCGTTACCTCAAGAAAACACTCGTTGCCTGACGGTTGTTTCCG
TGTCATAAAGTGGTCTTCATGTAGTCATCTCCGAATGACACAAATGACGT
CAATCAGTCGTTCGGAATAAAATACTATGGTGCCCGTTCTCCCAAAACTG
TTCTACATTTCACCAATTTCATGTTCAATATTGAGCGCAGGGCTTGATTG
GAACACGCCGGACGCGTTCGACGATACGCAGGCGCTGCTATGCTTTGACC
GCGTGCGAGCACTAGATTCGGCGTTCACGAGAGTAATATCACCGCTACGA
GAATACATGGTGACCCGGTCGGAACTCGTGGCAGACAACGCGGGGATGTT
CTCGAACCTATTTGACAGAGACCTGCGAACGTGGACGGAATCGATGACCC
CGGCGTTTCGGGCGACCCTCGCATATTTGGAGACGGGGTACATGTCCGTT
GAGGCGCAATGGGCGACCACGGATGGCAAGCGCAGCGCGCCAATGGGGGG
GTCTGGATCGGGTAGACTGGCCAAAACCAACAAGCTGACACCGGTGGTGA
AACAGAATATGACCTGCTGGAGCTGGTTGAAGAACACGTGCCGGAATAGT
GATGCAAGCTGCCGGTTTATCCATGTGGCGGGCATCGGGCGTACAGAGGA
CGAGGTGAAGGCTGCCCGCCAAGAGCGGGAACAGGATGGAGGACGCGGGA
CAGGCGTTGATGCAGGACGGGGGCCCGGCGCCCCCGCGGGCCGGGGAAGG
GGCTCGGCGAGCCAGTCCTTGGCATCGCGTCGGCAAGGTGAGGGTCGCGG
TGGTGGCTCGAAAGCAGGGTCGGGCGCGGGCTTGGCTGGGACACGGCGGG
GCCTACAGGTTCGGGGACGCAGCGGCGTGGCGCAGTGAGGAGTCCTGGGG
GGCTGAAGGGGCTGGCTCGTGAGGCGTTAGCACAGACGGATCAAGCCGTA
GGCGCTCGGGAGCCGCTTGTCCCTGGATCTCTCCAGGCGTACGAACCCGG
TGTGTGTTTGCGAAATGAGTTGGTTGGGGAAAACGAGTTACTCACAGAAC
AGTATTGTGCGAAAAAAGAGACGCCCCACTTTGATGCTCTGGTTGAGAGA
TGGAAACAGGACGTAAGATTACTGCGTGACCATGGAAAGGGGACCCAAAC
ACTGCATTCTATTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig23084:364..1529+

>mRNA_H-paniculata_contig23084.6205.1 ID=mRNA_H-paniculata_contig23084.6205.1|Name=mRNA_H-paniculata_contig23084.6205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig23084:364..1529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCCCGTTCTCCCAAAACTGTTCTACATTTCACCAATTTCATGTTC
AATATTGAGCGCAGGGCTTGATTGGAACACGCCGGACGCGTTCGACGATA
CGCAGGCGCTGCTATGCTTTGACCGCGTGCGAGCACTAGATTCGGCGTTC
ACGAGAGTAATATCACCGCTACGAGAATACATGGTGACCCGGTCGGAACT
CGTGGCAGACAACGCGGGGATGTTCTCGAACCTATTTGACAGAGACCTGC
GAACGTGGACGGAATCGATGACCCCGGCGTTTCGGGCGACCCTCGCATAT
TTGGAGACGGGGTACATGTCCGTTGAGGCGCAATGGGCGACCACGGATGG
CAAGCGCAGCGCGCCAATGGGGGGGTCTGGATCGGGTAGACTGGCCAAAA
CCAACAAGCTGACACCGGTGGTGAAACAGAATATGACCTGCTGGAGCTGG
TTGAAGAACACGTGCCGGAATAGTGATGCAAGCTGCCGGTTTATCCATGT
GGCGGGCATCGGGCGTACAGAGGACGAGGTGAAGGCTGCCCGCCAAGAGC
GGGAACAGGATGGAGGACGCGGGACAGGCGTTGATGCAGGACGGGGGCCC
GGCGCCCCCGCGGGCCGGGGAAGGGGCTCGGCGAGCCAGTCCTTGGCATC
GCGTCGGCAAGGTGAGGGTCGCGGTGGTGGCTCGAAAGCAGGGTCGGGCG
CGGGCTTGGCTGGGACACGGCGGGGCCTACAGGTTCGGGGACGCAGCGGC
GTGGCGCAGTGAATGGTGCCCGTTCTCCCAAAACTGTTCTACATTTCACC
AATTTCATGTTCAATATTGAGCGCAGGGCTTGATTGGAACACGCCGGACG
CGTTCGACGATACGCAGGCGCTGCTATGCTTTGACCGCGTGCGAGCACTA
GATTCGGCGTTCACGAGAGTAATATCACCGCTACGAGAATACATGGTGAC
CCGGTCGGAACTCGTGGCAGACAACGCGGGGATGTTCTCGAACCTATTTG
ACAGAGACCTGCGAACGTGGACGGAATCGATGACCCCGGCGTTTCGGGCG
ACCCTCGCATATTTGGAGACGGGGTACATGTCCGTTGAGGCGCAATGGGC
GACCACGGATGGCAAGCGCAGCGCGCCAATGGGGGGGTCTGGATCGGGTA
GACTGGCCAAAACCAACAAGCTGACACCGGTGGTGAAACAGAATATGACC
TGCTGGAGCTGGTTGAAGAACACGTGCCGGAATAGTGATGCAAGCTGCCG
GTTTATCCATGTGGCGGGCATCGGGCGTACAGAGGACGAGGTGAAGGCTG
CCCGCCAAGAGCGGGAACAGGATGGAGGACGCGGGACAGGCGTTGATGCA
GGACGGGGGCCCGGCGCCCCCGCGGGCCGGGGAAGGGGCTCGGCGAGCCA
GTCCTTGGCATCGCGTCGGCAAGGTGAGGGTCGCGGTGGTGGCTCGAAAG
CAGGGTCGGGCGCGGGCTTGGCTGGGACACGGCGGGGCCTACAGGTTCGG
GGACGCAGCGGCGTGGCGCAGTGA
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