mRNA_H-paniculata_contig23084.6206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23084.6206.1
Unique NamemRNA_H-paniculata_contig23084.6206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23084.6206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23084contigH-paniculata_contig23084:1269..2393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.3432024-CDS-H-paniculata_contig23084:1268..13621622929650.3432024-CDS-H-paniculata_contig23084:1268..1362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23084 1269..1362 +
1691480951.4173543-CDS-H-paniculata_contig23084:1268..13621691480951.4173543-CDS-H-paniculata_contig23084:1268..1362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23084 1269..1362 +
1622929650.3592002-CDS-H-paniculata_contig23084:2287..23911622929650.3592002-CDS-H-paniculata_contig23084:2287..2391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23084 2288..2391 +
1691480951.425569-CDS-H-paniculata_contig23084:2287..23911691480951.425569-CDS-H-paniculata_contig23084:2287..2391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23084 2288..2391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23084.6206.1prot_H-paniculata_contig23084.6206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23084 1269..2391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23084.6206.1

>prot_H-paniculata_contig23084.6206.1 ID=prot_H-paniculata_contig23084.6206.1|Name=mRNA_H-paniculata_contig23084.6206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
KGLAREALAQTDQAVGAREPLVPGSLQAYEPEYPIMVRLQRRECGWQSRA
IGLLNSFLMTVQQFRV
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mRNA from alignment at H-paniculata_contig23084:1269..2393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23084.6206.1 ID=mRNA_H-paniculata_contig23084.6206.1|Name=mRNA_H-paniculata_contig23084.6206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-paniculata_contig23084:1269..2393+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGGCTGGCTCGTGAGGCGTTAGCACAGACGGATCAAGCCGTAGGCGC
TCGGGAGCCGCTTGTCCCTGGATCTCTCCAGGCGTACGAACCCGGTGTGT
GTTTGCGAAATGAGTTGGTTGGGGAAAACGAGTTACTCACAGAACAGTAT
TGTGCGAAAAAAGAGACGCCCCACTTTGATGCTCTGGTTGAGAGATGGAA
ACAGGACGTAAGATTACTGCGTGACCATGGAAAGGGGACCCAAACACTGC
ATTCTATTGCGCAATTGGGTTCGGATATGCTTTCGCTGGTAAATGGTAGT
GTGGGCGATTTGGTGCATGCCATCGGCTTTTCTCATTTTGCGCCACATAT
TGATGTTGACCGCGTGTCCGACTGGTTTGGGGGTATAAAGAAATTCCCAC
ATGTAAAGCGTCTGCTTCGTACACTGAACCCCGGTGCTGTTTGTGACGTG
AAGAACGGGGGAAACACTGTGGGGGCACTAGAATACGGGAACCATCATAG
CGCGCAACCATACGCTTCTAAGATAACCTCTCAAGTGATAGCAGATGTCA
TCAATGGCAGAGCCGTAGTGTTCGACCAACGGCGTGCATGCGAAATTAAC
CACCTGCGCATATCCCCTGTAGGAGTGGTCGAGAACAAATTTCGTATTGT
ACACGACCTGTCTTTCCCACGAAACGACCCGGATGGTTTCTCAAGTGTGA
ATGCGGATACTGATTTTGCACGTGCCCCACAAGTTGAACTTGGTGATGTC
ATTAAAGACGTCTTGTTGCGTATCATGTACTTGCGGCAAAAGCATGGGCC
AAGCGCTCGTATCGTAATCAGTAAGATGGATATCAGCGAAGCGTACAGGC
AACTTCCTATTGATCCCGCTGGTGCTAATTTATTCAGCTATGCGATTGAA
GGAGTTGTAGTGTCCGATCTCCGATTACAGTTTCGATGGCGCAGTAGCTC
TGGGTATTGGGCAATAGCGGCAGTCACACTTGAACACTCACACAATCATA
CAACGTTTCGCGGTTCCAGAATATCCGATCATGGTAAGGCTGCAGCGGCG
GGAGTGCGGGTGGCAGAGCCGCGCAATCGGTCTGTTAAACTCGTTCCTCA
TGACTGTGCAGCAATTCCGTGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23084:1269..2393+

>mRNA_H-paniculata_contig23084.6206.1 ID=mRNA_H-paniculata_contig23084.6206.1|Name=mRNA_H-paniculata_contig23084.6206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig23084:1269..2393+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGGCTGGCTCGTGAGGCGTTAGCACAGACGGATCAAGCCGTAGGCGC
TCGGGAGCCGCTTGTCCCTGGATCTCTCCAGGCGTACGAACCCGAAGGGG
CTGGCTCGTGAGGCGTTAGCACAGACGGATCAAGCCGTAGGCGCTCGGGA
GCCGCTTGTCCCTGGATCTCTCCAGGCGTACGAACCCGAATATCCGATCA
TGGTAAGGCTGCAGCGGCGGGAGTGCGGGTGGCAGAGCCGCGCAATCGGT
CTGTTAAACTCGTTCCTCATGACTGTGCAGCAATTCCGTGTGAATATCCG
ATCATGGTAAGGCTGCAGCGGCGGGAGTGCGGGTGGCAGAGCCGCGCAAT
CGGTCTGTTAAACTCGTTCCTCATGACTGTGCAGCAATTCCGTGTG
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