mRNA_H-paniculata_contig23079.6202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23079.6202.1
Unique NamemRNA_H-paniculata_contig23079.6202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23079.6202.1 vs. uniprot
Match: A0A6H5L4S6_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4S6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.320e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3 
Query:   45 LGSFRQV-DSGESEGTMVDSFDTIRLLMEGDGAIVLEKRVPVPFLIREHARKFHWGYPHGAM 227
            LG FR+  D+G+ EG  VDSFD IR +ME D A  LE+R  +PFLIREHARKF WG   G +
Sbjct:  289 LGGFREGGDAGKQEGEYVDSFDRIRSIMEADDAFGLERRCSMPFLIREHARKFQWGCSDGTV 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23079.6202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4S6_9PHAE1.320e-1258.06Methyltransf_11 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23079contigH-paniculata_contig23079:2598..4036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D8LPQ6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Methyltransferase domain
EggNOG OGs28JWG@1,2QSAN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size467
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23079.6202.1prot_H-paniculata_contig23079.6202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23079 3144..3799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.8591971-UTR-H-paniculata_contig23079:2597..26291622929649.8591971-UTR-H-paniculata_contig23079:2597..2629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23079 2598..2629 +
1691480951.1709166-UTR-H-paniculata_contig23079:2597..26291691480951.1709166-UTR-H-paniculata_contig23079:2597..2629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23079 2598..2629 +
1622929649.8741727-UTR-H-paniculata_contig23079:3086..31431622929649.8741727-UTR-H-paniculata_contig23079:3086..3143Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23079 3087..3143 +
1691480951.1828773-UTR-H-paniculata_contig23079:3086..31431691480951.1828773-UTR-H-paniculata_contig23079:3086..3143Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23079 3087..3143 +
1622929649.9092743-UTR-H-paniculata_contig23079:3799..40361622929649.9092743-UTR-H-paniculata_contig23079:3799..4036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23079 3800..4036 +
1691480951.215827-UTR-H-paniculata_contig23079:3799..40361691480951.215827-UTR-H-paniculata_contig23079:3799..4036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23079 3800..4036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.885823-CDS-H-paniculata_contig23079:3143..31641622929649.885823-CDS-H-paniculata_contig23079:3143..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23079 3144..3164 +
1691480951.1926548-CDS-H-paniculata_contig23079:3143..31641691480951.1926548-CDS-H-paniculata_contig23079:3143..3164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23079 3144..3164 +
1622929649.896514-CDS-H-paniculata_contig23079:3679..37991622929649.896514-CDS-H-paniculata_contig23079:3679..3799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23079 3680..3799 +
1691480951.2024932-CDS-H-paniculata_contig23079:3679..37991691480951.2024932-CDS-H-paniculata_contig23079:3679..3799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23079 3680..3799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23079.6202.1

>prot_H-paniculata_contig23079.6202.1 ID=prot_H-paniculata_contig23079.6202.1|Name=mRNA_H-paniculata_contig23079.6202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MVDSFDTIRLLMEGDGAIVLEKRVPVPFLIREHARKFHWGYPHGAM*
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mRNA from alignment at H-paniculata_contig23079:2598..4036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23079.6202.1 ID=mRNA_H-paniculata_contig23079.6202.1|Name=mRNA_H-paniculata_contig23079.6202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1439bp|location=Sequence derived from alignment at H-paniculata_contig23079:2598..4036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGTACAACAGTCAGCACGTCAAAAAGTAGGTGGGTGGAAAGTGATAA
AATATATCGTAAACACATGTGCCAGTGCTGGGCTGAGGGTAATTTTACTA
GGCATGTGCTCCATGTAATGGTCGTGCACCGGTATGCATGTTAATAGTTT
ATGTTGCCGCCGTGGTTCGTTTGGAACTGGTTGAATACATAAATATTACA
AACATATAGCCCGTCTTGGAGCTAGAAGAGCTATGCAACTCCGCAGCTAT
TTTGTTTTCCCAGGCTGTCCTGTTGATACCTGCAGTAGCGCCTTAGAGCT
AGCTGTTTGGTCCTCGGGGAAGAGGAATATATTCTAAAATGCTGTATACG
TAGCGCTTTCCAGTAGACCCGGTGTCTCCATGTTGCCGCGCCTGTCCACG
TCGGGGTCGTTGAGCTACTATTATGCTGTTTGCAAAAGTTGGCAACGTTC
TTTTGGTGTGGTGCTCGTCCCTGCATTGCCCTTCGCCAGGACTAGGAATA
GTTGGGGAGCTTTCGACAGGTGGACAGCGGGGAAAGCGAAGGCACTATGG
TGGACAGCTTTGATACGGTAACTGGGTGTGCGAGTCACAAACACAATTTT
TTTTACTGCACCGCACTCGCTTGTGCCATGAACTGCGCTTTGATTTGGTT
TGGTTTGGTTCGTGTAGGAAGGAGTTTACTAGGTCTTCGAAGATGGTCGA
GAGGTGTTTTTCTTTCCGGACAAGCTTTGTGTGAAATTAGCGCTTAACGG
CTAGATTTACAAAAGTGCAGCGAGAGCGACCCGTCCCCAGCGACAGCTTT
TGCAGTGCCATTTGGACGGTCGAATTCCGTGGGTGGTTTCTGTTTATACT
TGTAGTGTTTTGTAACAGCGACAAGAGGCCGACTTGGTATTCGCTTGGTC
TGACTATATCATAGCAGTGATGCACACGGGTCTTCTAACCTAACTAACAC
TTCCGAGAGCAACAACGGCAGCCCACCCTTGAGTATTTCTACACTGTGCA
ATTTGAGCACAGGACATATTCTTGTTTATTTGCAAACATGTATTAATCTG
TTTTTGTTCTGTACTGTGCGTGTCCGGGTCAGATTCGTTTGTTGATGGAA
GGCGATGGAGCTATTGTGCTGGAGAAGAGAGTCCCAGTGCCGTTCCTTAT
CCGAGAGCATGCGCGCAAGTTCCACTGGGGGTATCCACACGGGGCCATGT
AGTGAAGGACGGCGTGAGAGATAGCCCTCCAGATTCAAAGTTGTCTTTGT
CCCAGTATCATACCGTGGCGTACTGCACTGTATCGCACCTTGGCCCTGGT
GCAAGAGCTCTGTTAAACCGTGGTCGTGAAAAAATAGATCAATTTCGATG
CTTGGTTTGGAACCCAGCGCAATCTGAGCAAGACTTTTTGTTGAAATGCA
TGTTGCGGCCCGTGCGATTACCGCATTGTTGTGTGTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig23079:2598..4036+

>mRNA_H-paniculata_contig23079.6202.1 ID=mRNA_H-paniculata_contig23079.6202.1|Name=mRNA_H-paniculata_contig23079.6202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig23079:2598..4036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGACAGCTTTGATACGATGGTGGACAGCTTTGATACGATTCGTTT
GTTGATGGAAGGCGATGGAGCTATTGTGCTGGAGAAGAGAGTCCCAGTGC
CGTTCCTTATCCGAGAGCATGCGCGCAAGTTCCACTGGGGGTATCCACAC
GGGGCCATGTAGATTCGTTTGTTGATGGAAGGCGATGGAGCTATTGTGCT
GGAGAAGAGAGTCCCAGTGCCGTTCCTTATCCGAGAGCATGCGCGCAAGT
TCCACTGGGGGTATCCACACGGGGCCATGTAG
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