mRNA_H-paniculata_contig23078.6201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23078.6201.1
Unique NamemRNA_H-paniculata_contig23078.6201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A6H5KBP7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.010e-38
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E AKLQDAVPPF   LAMEVL++ELGRP SEVFSE+SE PIAAASL+QVY+  LR+DGR VA+KIQRPGLVQEVTKDLYVLKRAVGVYQ LS R
Sbjct:  315 ELAKLQDAVPPFPTPLAMEVLEQELGRPPSEVFSEISEEPIAAASLAQVYRGVLRSDGRAVAIKIQRPGLVQEVTKDLYVLKRAVGVYQNLSNR 408          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A0D2IW22_9CHLO (Putative aarF domain-containing protein kinase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IW22_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 6.800e-29
Identity = 51/94 (54.26%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E A++QD + PFS   A  +++++LGRP  EVFSE  + P+ AASL+QVY+A++RA G+EVAVK+QRPG +  ++KDLYV++RAVGVY+R+ +R
Sbjct:   16 ELARVQDKIAPFSTEEARAMVEKDLGRPIDEVFSEFGDEPVGAASLAQVYRARVRATGQEVAVKVQRPGALSTISKDLYVMRRAVGVYERIVKR 109          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A250XDH8_9CHLO (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XDH8_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 8.700e-28
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E AKLQD + PFS+  A  +++++LG+P  E+FSE SE PIAAASL+QVY+A+LR+ G EVAVK+QRPG +  ++KDLYVL+RAVGVY+++  R
Sbjct:  196 ELAKLQDRIEPFSNLEARAMIEKDLGKPIEEIFSEFSEKPIAAASLAQVYRARLRSTGDEVAVKVQRPGALSTISKDLYVLRRAVGVYEQIVRR 289          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A7R9UA81_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA81_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.480e-27
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E +KLQDAV PF+ ++A+  ++ ELG+P   VF+E+SE P+AAASL+QVYKAKL A G  VAVKIQRP ++  V+KDLYVL+RA  VYQ L ER
Sbjct:  204 ELSKLQDAVKPFNSSVAIAQIERELGQPLGAVFTEISEEPVAAASLAQVYKAKLAATGEWVAVKIQRPSVLSVVSKDLYVLRRAAEVYQGLMER 297          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A2K3DS79_CHLRE (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DS79_CHLRE)

HSP 1 Score: 112 bits (279), Expect = 9.420e-27
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E +KLQD + PF    A  VL++ELG P  E+FSE SE PIAAASL+QVY+A++RA G+EVAVK+QRP  +  ++KDLYV++RAVGVY++L +R
Sbjct:  195 ELSKLQDRIEPFPTDQARAVLEKELGAPVDEIFSEFSEKPIAAASLAQVYRARIRATGQEVAVKVQRPQALGTISKDLYVMRRAVGVYEKLVKR 288          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A8J4G9I6_9CHLO (ABC1 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G9I6_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 1.460e-26
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E AKLQD + PF    A  V+++ELG P  ++FSE SE PIAAASL+QVY+A+LR  G EVAVK+QRP  +  ++KDLYV++RAVGVY++L +R
Sbjct:  210 ELAKLQDRIEPFPTDQARAVVEKELGAPLDQIFSEFSEKPIAAASLAQVYRARLRLTGEEVAVKVQRPQALATISKDLYVMRRAVGVYEKLVKR 303          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A835YBZ0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YBZ0_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 1.970e-26
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E +KLQD + PF    A  V+ +ELGRP  EVFSE SE PIAAASL+QVY+A++RA G EVAVK+QRP     ++KDLYV++RAVGVY++L +R
Sbjct:  186 ELSKLQDRIEPFPTDQARAVVSKELGRPLEEVFSEFSEKPIAAASLAQVYRARIRATGEEVAVKVQRPQAQAIISKDLYVMRRAVGVYEKLVKR 279          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A7R9V846_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V846_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 3.460e-26
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E A LQD + PFS   A + L+ ELGRP  E+FSE  E PIAAASL+QVY+A LR+ G +VAVK+QRP  +  ++KDLYVL+RAVGVY++L  R
Sbjct:  166 ELASLQDRIEPFSTVEARKTLEAELGRPIDEIFSEFGEEPIAAASLAQVYRAVLRSTGEQVAVKVQRPAALSTISKDLYVLRRAVGVYEQLVRR 259          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A383VLQ5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VLQ5_TETOB)

HSP 1 Score: 110 bits (275), Expect = 3.650e-26
Identity = 52/94 (55.32%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E +KLQD + PFS   A  +++ ELG+P   +FSE SE PIAAASL+QVY+A+LR++G+EVAVK+QRPG +  ++KDLYV++R +GVY++L +R
Sbjct:  179 ELSKLQDRIEPFSTPEARRMIEAELGQPIDVIFSEFSELPIAAASLAQVYRARLRSNGQEVAVKVQRPGALSTISKDLYVMRRGIGVYEQLVKR 272          
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Match: A0A2P6VKR6_9CHLO (Alanine-glyoxylate transaminase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VKR6_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 3.690e-26
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVYKAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER 282
            E AKLQD + PFS   A   ++ ELG P  E+FSE SE PIAAASL+QVY A++RA G+EVAVK+QRP  +  ++KDLYV++RAVGVY+RL  R
Sbjct:  577 ELAKLQDKIEPFSTVEARAAVEAELGAPIDELFSEFSEKPIAAASLAQVYCARVRATGQEVAVKVQRPAALATISKDLYVMRRAVGVYERLVRR 670          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23078.6201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBP7_9PHAE1.010e-3880.85Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A0D2IW22_9CHLO6.800e-2954.26Putative aarF domain-containing protein kinase n=1... [more]
A0A250XDH8_9CHLO8.700e-2858.51Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A7R9UA81_9STRA6.480e-2760.64Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A2K3DS79_CHLRE9.420e-2758.51Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A8J4G9I6_9CHLO1.460e-2657.45ABC1 domain-containing protein n=1 Tax=Volvox reti... [more]
A0A835YBZ0_9CHLO1.970e-2659.57Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7R9V846_9CHLO3.460e-2658.51Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A383VLQ5_TETOB3.650e-2655.32Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A2P6VKR6_9CHLO3.690e-2659.57Alanine-glyoxylate transaminase n=1 Tax=Micractini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23078contigH-paniculata_contig23078:2696..3791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.5
Seed ortholog evalue4.2e-22
Seed eggNOG ortholog41875.XP_007511470.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC1 family
EggNOG OGs34K5S@3041,37Z3B@33090,COG0661@1,KOG1235@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.80486-CDS-H-paniculata_contig23078:2695..28391622929649.80486-CDS-H-paniculata_contig23078:2695..2839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23078 2696..2839 +
1691480951.1513274-CDS-H-paniculata_contig23078:2695..28391691480951.1513274-CDS-H-paniculata_contig23078:2695..2839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23078 2696..2839 +
1622929649.8166459-CDS-H-paniculata_contig23078:3650..37911622929649.8166459-CDS-H-paniculata_contig23078:3650..3791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23078 3651..3791 +
1691480951.160307-CDS-H-paniculata_contig23078:3650..37911691480951.160307-CDS-H-paniculata_contig23078:3650..3791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23078 3651..3791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23078.6201.1prot_H-paniculata_contig23078.6201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23078 2696..3791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23078.6201.1

>prot_H-paniculata_contig23078.6201.1 ID=prot_H-paniculata_contig23078.6201.1|Name=mRNA_H-paniculata_contig23078.6201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
EKAKLQDAVPPFSDTLAMEVLDEELGRPWSEVFSELSEGPIAAASLSQVY
KAKLRADGREVAVKIQRPGLVQEVTKDLYVLKRAVGVYQRLSER*
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mRNA from alignment at H-paniculata_contig23078:2696..3791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23078.6201.1 ID=mRNA_H-paniculata_contig23078.6201.1|Name=mRNA_H-paniculata_contig23078.6201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1096bp|location=Sequence derived from alignment at H-paniculata_contig23078:2696..3791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAAGCCAAGTTGCAGGATGCGGTCCCTCCCTTTTCCGACACGCTGGC AATGGAAGTGCTTGATGAAGAGCTGGGTCGACCTTGGTCGGAGGTGTTCA GCGAGCTCAGCGAGGGGCCCATAGCGGCGGCGTCGTTGTCACAGGTAGGG AGAGGTGCACCCTGGAGAAAAAAATGGTGAGTTATTTTTGATCCCTTTTT GGTAACGGTGGCAGTTGCTTCCGAAGCACGAACGGATTTTATCGAAGAAG CATGATGCTGGCGACCGGTCACTAACGTAGCGAACATGCCACATGCTATT ATGCGTCTTAGTGAGGGATGCTGTAGAGTGAAGACAGAAGAGCCAATCGC TCCATGTGCTACAGTGGAGGGGGGGGGGGAGTCACTTGTCTGGGGAGCCG CTCTGCCAATCTCTTGAAAGTGGTTATCGGATTTACTGACCTAGTATGTA CTAAGTAGTCCACATCTACGATTTCCGTTCTAGGCTCCGCTACAAGTAAG TCCTGGTACTTGGTAAAGCGTACCCCCAAGTTGGTCTAATGAGGCTGATG GGTGTCAGGGCTGTCACTTCAGTACTGGTGTACACCCTCAGCATGATGAC GGCAAAATCACTTCACTAGCTGTACTAGGAGAGTAGAGCCACGACTAGGC TATACCCGTGCACTTCATGCCTGCCCTCTACCTACGCACTCGTTGCGCTC GCGTGAAGATTCGCTTTTCCGGAGTCACTTGAGTACAGAATTAAAAAGAT ATTCCGAAACGACGACTACCGTTCTTGTGCCGTATTAAATAACACCGAGA CCATGACATGGACAAAAGCGCTTGAATTATATACGAAAGTTTCATTGGTT AAGTGGGTATTCGCGTCAGATGCTAACTTTATGTCACGTAATGCCCACGG ACAGTTCACACGCATAAGTACGGTACCCCCCACCCCGATTAATGTTACTT TGAAGGTGTACAAAGCAAAGCTTCGCGCTGACGGACGGGAGGTTGCGGTA AAGATCCAGCGACCGGGGCTTGTGCAGGAGGTTACCAAGGACCTGTACGT CCTCAAGAGGGCTGTCGGGGTCTACCAGAGACTTTCGGAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23078:2696..3791+

>mRNA_H-paniculata_contig23078.6201.1 ID=mRNA_H-paniculata_contig23078.6201.1|Name=mRNA_H-paniculata_contig23078.6201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig23078:2696..3791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAAGCCAAGTTGCAGGATGCGGTCCCTCCCTTTTCCGACACGCTGGC
AATGGAAGTGCTTGATGAAGAGCTGGGTCGACCTTGGTCGGAGGTGTTCA
GCGAGCTCAGCGAGGGGCCCATAGCGGCGGCGTCGTTGTCACAGGAAAAA
GCCAAGTTGCAGGATGCGGTCCCTCCCTTTTCCGACACGCTGGCAATGGA
AGTGCTTGATGAAGAGCTGGGTCGACCTTGGTCGGAGGTGTTCAGCGAGC
TCAGCGAGGGGCCCATAGCGGCGGCGTCGTTGTCACAGGTGTACAAAGCA
AAGCTTCGCGCTGACGGACGGGAGGTTGCGGTAAAGATCCAGCGACCGGG
GCTTGTGCAGGAGGTTACCAAGGACCTGTACGTCCTCAAGAGGGCTGTCG
GGGTCTACCAGAGACTTTCGGAGAGGTGAGTGTACAAAGCAAAGCTTCGC
GCTGACGGACGGGAGGTTGCGGTAAAGATCCAGCGACCGGGGCTTGTGCA
GGAGGTTACCAAGGACCTGTACGTCCTCAAGAGGGCTGTCGGGGTCTACC
AGAGACTTTCGGAGAGGTGA
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