mRNA_H-paniculata_contig23075.6200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23075.6200.1
Unique NamemRNA_H-paniculata_contig23075.6200.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23075.6200.1 vs. uniprot
Match: D8LJI6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.330e-15
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:  229 DGLRPVCXXXXXXXXXXXXXXXXXXXXXXFCHPSFGYASDKKARRCARHRLENMEGVKGHRQKRRKEA 432
            DGLRPVCXXXXXXXXXXXXXXXXXXXXXX  HPSFGYASDKKARRCARHRLENMEGVKGHRQKRR+EA
Sbjct:  594 DGLRPVCXXXXXXXXXXXXXXXXXXXXXXXXHPSFGYASDKKARRCARHRLENMEGVKGHRQKRRREA 661
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BLAST of mRNA_H-paniculata_contig23075.6200.1 vs. uniprot
Match: D8LFX5_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX5_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.060e-5
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 GDRRASYCAEHKLTGMINVASRRCQHPGCLRHPNFGFP 117
            G +RA +CA+H+L GM+NV + RC+  GC + P FG P
Sbjct:   20 GTKRAQFCAQHRLGGMVNVLAPRCETEGCKKRPTFGIP 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23075.6200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJI6_ECTSI5.330e-1595.59EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LFX5_ECTSI4.060e-550.00EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23075contigH-paniculata_contig23075:1981..3664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog2880.D8LJI6
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size432
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23075.6200.1prot_H-paniculata_contig23075.6200.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23075 1981..3664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.6245933-CDS-H-paniculata_contig23075:1980..21031622929649.6245933-CDS-H-paniculata_contig23075:1980..2103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23075 1981..2103 -
1691480951.1267748-CDS-H-paniculata_contig23075:1980..21031691480951.1267748-CDS-H-paniculata_contig23075:1980..2103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23075 1981..2103 -
1622929649.6407778-CDS-H-paniculata_contig23075:2816..29821622929649.6407778-CDS-H-paniculata_contig23075:2816..2982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23075 2817..2982 -
1691480951.1357915-CDS-H-paniculata_contig23075:2816..29821691480951.1357915-CDS-H-paniculata_contig23075:2816..2982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23075 2817..2982 -
1622929649.7725155-CDS-H-paniculata_contig23075:3521..36641622929649.7725155-CDS-H-paniculata_contig23075:3521..3664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23075 3522..3664 -
1691480951.1431708-CDS-H-paniculata_contig23075:3521..36641691480951.1431708-CDS-H-paniculata_contig23075:3521..3664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23075 3522..3664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23075.6200.1

>prot_H-paniculata_contig23075.6200.1 ID=prot_H-paniculata_contig23075.6200.1|Name=mRNA_H-paniculata_contig23075.6200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
QGDRRASYCAEHKLTGMINVASRRCQHPGCLRHPNFGFPGDRRASYCSGH
RETGMVDIVSRRCRDPSCGRRPLYNMDGLRPVCCSQHKAPGMIDVVSTRC
QEPGCFCHPSFGYASDKKARRCARHRLENMEGVKGHRQKRRKEA
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mRNA from alignment at H-paniculata_contig23075:1981..3664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23075.6200.1 ID=mRNA_H-paniculata_contig23075.6200.1|Name=mRNA_H-paniculata_contig23075.6200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1684bp|location=Sequence derived from alignment at H-paniculata_contig23075:1981..3664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGATCGTCGAGCATCCTACTGCGCGGAGCATAAACTTACGGGGAT
GATTAACGTCGCTAGTCGACGCTGTCAGCATCCCGGCTGTCTCAGACATC
CCAACTTCGGTTTTCCTGGGGATCGTCGGGCGTCATACTGCAGGTGCGTA
GGCGACGAGACCCGCCGGGGGGGCGGGGGGCGGGTGAACTATAACTGCGA
ATCTTGTACTAAAACTATTACATTGTACCCATGTCAAGGGCATGTACCGG
ACTTCAATCTGCGCTTGTCTAATGACACTTGAAAGGAAAATTTAATGGAT
GGACGAGTGATTCTTGTCGCTTGACAGCGTGGTTAAGGCTCACATATGAT
ACTTTTCCTTTCGACACGTGCAGCTATTCTTATGTGTTTAAACAAGAAAA
AAAAAAGGAGCCCGCACACACTTGACAAGTTAAACCCATCGTTATGATTG
GATTATAAGAGTATATAGTAAGATATCTGTGGAGAGGGAGGGGAGCAGCA
ACTCGTGTCCAACTCGATCATATCAACGAAGACAACAATTGAGGTACCAG
TACGACACGATGTTTTCCAATGATAGGCTGGAAGTGTGCCGCGCTTTTCA
ACAAAATGATTCATTTTGGAATGTAGATGCCCCCGTCACGTCCTTGCTTG
ATTCCACTTCCCGCCTCTTTCGGGTGTTACAGCGGACACCGCGAGACGGG
TATGGTGGATATCGTGTCTAGGAGGTGTCGAGATCCCTCTTGTGGGCGAC
GGCCATTGTATAACATGGACGGCCTGCGTCCCGTGTGCTGCAGCCAGCAC
AAGGCGCCCGGGATGATCGATGTGGTTAGCACGCGTTGTCAAGAGCCAGT
GAGTGAAGAGTTTTTTTAATCTGACACAGTTGACTCAATTTTTTTTTGTT
GATTTTAATCATCGTCATCGGAACAGAGAGACGCAGATGTCCATCACCTT
GCCGCTCTAAAGGATTTCTAGCGCTTTATCGTCGCAAAAATCTTGACCCG
CGACAAACGAATAGAGCATTTGTTCTTTCGTGTTTTGCCTTATGCGGTAG
AAACAGGATGCCATTTGGTCGCTGAGATAGAGCAGTGAAGGTTGCTATTA
CAGCATGAGTCGCTGAGAAGAAATTACATGGCGTACTGTATTGTTATTAT
GATCGCTGTGCACGCGTTGGCCTAGCGTGGGGGCCAAATAATAATCCTGG
CGATTCGCAACCCCTGGTGTCACTGTCCTCTACGCGATGTTTTTTGCGGA
TTGTGTTACCATCTGATGGCGCACGGAAATATGCAAAGAGAGCACTTCCC
GATTTATGGATTGCTGGATTTCCCTGTCAAAAACTAGTAGCATGTAATGA
GTTTACGACGTGCGGTAGGAGTCAGGAGTAACAAAAGATGCGTGTCGTTT
TTTCCCCAGAAGCTCCTTCTCTCTCGTTTCAAAACCATTTCTCTATTTCC
TGTTGCGGTTCTCGCTCCGTCTGCCTCCCCATCCCTGTCCCCGTCCCCGC
CCCTCACGCTCTCGCCGACCGGCCGAACGACTGTCCTAAATCATGAAAAT
CTAATGATCAGGGGTGCTTCTGTCATCCCTCGTTCGGGTACGCCTCCGAC
AAAAAGGCGCGCCGATGTGCCAGGCATCGTCTCGAAAACATGGAAGGCGT
TAAGGGCCACCGACAAAAACGCCGCAAAGAAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig23075:1981..3664-

>mRNA_H-paniculata_contig23075.6200.1 ID=mRNA_H-paniculata_contig23075.6200.1|Name=mRNA_H-paniculata_contig23075.6200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig23075:1981..3664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGATCGTCGAGCATCCTACTGCGCGGAGCATAAACTTACGGGGAT
GATTAACGTCGCTAGTCGACGCTGTCAGCATCCCGGCTGTCTCAGACATC
CCAACTTCGGTTTTCCTGGGGATCGTCGGGCGTCATACTGCAGCAGGGCG
ATCGTCGAGCATCCTACTGCGCGGAGCATAAACTTACGGGGATGATTAAC
GTCGCTAGTCGACGCTGTCAGCATCCCGGCTGTCTCAGACATCCCAACTT
CGGTTTTCCTGGGGATCGTCGGGCGTCATACTGCAGCGGACACCGCGAGA
CGGGTATGGTGGATATCGTGTCTAGGAGGTGTCGAGATCCCTCTTGTGGG
CGACGGCCATTGTATAACATGGACGGCCTGCGTCCCGTGTGCTGCAGCCA
GCACAAGGCGCCCGGGATGATCGATGTGGTTAGCACGCGTTGTCAAGAGC
CACGGACACCGCGAGACGGGTATGGTGGATATCGTGTCTAGGAGGTGTCG
AGATCCCTCTTGTGGGCGACGGCCATTGTATAACATGGACGGCCTGCGTC
CCGTGTGCTGCAGCCAGCACAAGGCGCCCGGGATGATCGATGTGGTTAGC
ACGCGTTGTCAAGAGCCAGGGTGCTTCTGTCATCCCTCGTTCGGGTACGC
CTCCGACAAAAAGGCGCGCCGATGTGCCAGGCATCGTCTCGAAAACATGG
AAGGCGTTAAGGGCCACCGACAAAAACGCCGCAAAGAAGCAGGGTGCTTC
TGTCATCCCTCGTTCGGGTACGCCTCCGACAAAAAGGCGCGCCGATGTGC
CAGGCATCGTCTCGAAAACATGGAAGGCGTTAAGGGCCACCGACAAAAAC
GCCGCAAAGAAGCA
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