mRNA_H-paniculata_contig2307.6198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2307.6198.1
Unique NamemRNA_H-paniculata_contig2307.6198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: D7FXG0_ECTSI (ATP-synt_DE_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG0_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 1.280e-68
Identity = 123/171 (71.93%), Postives = 140/171 (81.87%), Query Frame = 2 
Query:  152 MLGVLARRAAGTATGPVLRSAR-FSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            MLGV ARR AG A  P LR+AR FST  A A  +MKLNFCLPHETIYKDKDVDQVIIPG+AGEYGVT GHSP+VAE+KPGV+Q++H  G+EPE FFVSAGFALTHPTSVTD+TAIEAVRVEEID  AVK+ Y+ AK  M AAT+G+RE AEAQ+ VET  AM   IG+ L+
Sbjct:    1 MLGVAARRVAGAAR-PALRTARCFST--AEAPAVMKLNFCLPHETIYKDKDVDQVIIPGSAGEYGVTAGHSPIVAELKPGVVQVVHEAGQEPENFFVSAGFALTHPTSVTDITAIEAVRVEEIDEGAVKSSYDAAKREMDAATEGSREAAEAQVAVETTKAMAAAIGVVLA 168
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A836CK87_9STRA (ATP-synt_DE_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK87_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.050e-45
Identity = 92/172 (53.49%), Postives = 120/172 (69.77%), Query Frame = 2 
Query:  152 MLGVLARRAAGTATGPVLRSA--RFSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            M+G   RR+A     P LR++    ST  AA  T + LNFCLPH+ IY DK VD VIIPG AG YGVT GHS V++EM+PG+++I H  G EPE +FVSAGFALTHP SVTD+TA+EAV+V+++D +AVK  + +AK  + AA+D  +E   AQI + T   MG  +GL+LS
Sbjct:    1 MIGHALRRSA-----PALRASLRHMSTAEAAKPTGLTLNFCLPHKPIYVDKAVDTVIIPGVAGVYGVTQGHSAVISEMQPGLVKIYHEAGGEPENWFVSAGFALTHPNSVTDITAVEAVKVDDMDPEAVKDTFNQAKSDLAAASD-EKERVAAQIQMSTAQVMGQALGLNLS 166
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A6U3TGR8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TGR8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.460e-43
Identity = 88/171 (51.46%), Postives = 115/171 (67.25%), Query Frame = 2 
Query:  149 IMLGVLARRAAGTATGPVLRSARFSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            +M   L RR A T T   L     S+ AA AS++M LNF LPHETIY    V QVI+PGAAGEYGVT  H PVVA++K GVLQI+H    EPEK+FV  GF++TH  SVTD++  EAV+V++ID  AV + +E A+ A TAA  G+   AEA + +E   +MG+ +G++LS
Sbjct:    1 MMQSTLLRRIAPTLTRRAL-----SSNAAEASSVMTLNFNLPHETIYNGATVSQVIVPGAAGEYGVTADHVPVVAQLKAGVLQIMHESAGEPEKYFVPGGFSITHDNSVTDISCPEAVKVDDIDPAAVSSNFEAARNAYTAAEAGSAAQAEAMVDMEVYRSMGSAVGINLS 166
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A6U0LH08_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0LH08_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.190e-42
Identity = 83/152 (54.61%), Postives = 110/152 (72.37%), Query Frame = 2 
Query:  206 RSARFSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            R +R  + A A+   M LNF LPHETIY +  V QVI+PGAAGEYG+T  H P+VA++KPGVLQI+H +G +PEK+FV+ GF+LTH  SVTD++  EAV++++ID  A+ + YE AK A ++A  G+   AEAQI +E   AMG  IGLSLS
Sbjct:   14 RVSRCMSTAEASDGSMTLNFSLPHETIYSEAKVSQVIVPGAAGEYGITADHVPIVAQLKPGVLQIMH-EGGDPEKYFVAGGFSLTHENSVTDISCPEAVKLDDIDPTAISSNYEAAKSAFSSAEAGSIAAAEAQIDIEVNRAMGAAIGLSLS 164
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A7S2PKN7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKN7_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.200e-42
Identity = 90/169 (53.25%), Postives = 114/169 (67.46%), Query Frame = 2 
Query:  161 VLAR--RAAGTATGPVLRSARFSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            +LAR  R   +A+   L  A  S+EA  ++  M LNF LPHETIY    V QVI+PGAAGEYGVT  H P+VA++K GVLQI+H DG +PEKFFV  GF+LTH  S TD+T  EAV+ ++ID   V +EYE AK A  +A DG+   AEAQI +E   AMG  IG++L+
Sbjct:    7 MLARCSRTVASASSRRLSKAFLSSEAGGST--MTLNFNLPHETIYAGAPVKQVIVPGAAGEYGVTADHVPLVAQLKAGVLQIIHEDGGDPEKFFVPGGFSLTHENSTTDITCPEAVKFDDIDGAVVSSEYEAAKAAFGSAEDGSVAKAEAQIDMEVYRAMGGAIGITLA 173
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A7S1UY04_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UY04_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.290e-41
Identity = 83/149 (55.70%), Postives = 110/149 (73.83%), Query Frame = 2 
Query:  218 FSTEAAA-ASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            FS+EAAA AS  M LNF LP ET+Y   +VDQVI+PG AGEYG+T  H P+V+E+K GVLQILHGDG EPEK+FVS GFALTH  S TD++   AV+++++D+ AV + Y+ AK A  +A  G+   AEAQI ++   +MG+ +GL+LS
Sbjct:   18 FSSEAAAPASGKMTLNFSLPDETVYAGAEVDQVIVPGEAGEYGITANHVPIVSELKAGVLQILHGDG-EPEKYFVSGGFALTHDDSSTDISCPVAVKLDDLDSSAVSSNYDAAKSAFASAEAGSIAQAEAQIEMDVNKSMGSALGLNLS 165
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A1Z5JNE2_FISSO (F-type H+-transporting ATPase subunit delta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNE2_FISSO)

HSP 1 Score: 147 bits (371), Expect = 1.370e-38
Identity = 82/162 (50.62%), Postives = 111/162 (68.52%), Query Frame = 2 
Query:  185 TATGPVLRSAR--FSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGK-EPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            TA+  + RSA    STEAA   T +KLNFCLP ET+YK   V  VI+PG  GEYG+T  H P V+++KPGV++ILH +G  +PEK+FV+ G+ALTHP S TDV   EAV++++ID   V  +Y+ A+   ++AT G+ E AEAQI +E    MG  IG+SL+
Sbjct:    5 TASSFLRRSATRCMSTEAA---TAVKLNFCLPQETLYKGASVHSVILPGMGGEYGITANHVPYVSQLKPGVVKILHEEGSADPEKYFVAGGYALTHPDSTTDVICPEAVKLDDIDPSEVAKKYDAARTKFSSATAGSIEQAEAQIEMEITKEMGMAIGVSLN 163
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A1E7FRF1_9STRA (Epsilon subunit of F1F0-ATP synthase N-terminal domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRF1_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.450e-38
Identity = 75/147 (51.02%), Postives = 104/147 (70.75%), Query Frame = 2 
Query:  218 FSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSL 658
            FS+E+ AA++ + LNF +P+E+IY    V+QVIIPG  GEYGVT  H P VA+MKPG+L ++  D  E EK+FV+ G+A+TH  SVTDV  +EAV+V+++D   V A YE AK A  +AT G++E AEAQI +E    MG  +G++L
Sbjct:   30 FSSESEAAASSVSLNFSVPYESIYNGASVEQVIIPGVEGEYGVTANHVPYVAQMKPGILTVMF-DSSESEKYFVAGGYAVTHANSVTDVVCVEAVKVDDLDVSVVSANYEAAKSAAGSATAGSQEEAEAQIDMEVNKTMGAALGVTL 175
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BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A4D9CR36_9STRA (ATP-synt_DE_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR36_9STRA)

HSP 1 Score: 145 bits (367), Expect = 7.220e-38
Identity = 79/165 (47.88%), Postives = 109/165 (66.06%), Query Frame = 2 
Query:  167 ARRAAGTATGPVLRSARFSTEAAAASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            ARR  G  T  +L S   +   A++   + LNF LP  +IY++K V  V+IPG AGEYGVT  HSPV+AE+K GV+QI+H  G+ PEKFFVS GFALTH  SVTD+  +EA ++E+IDA+ V   Y +A     AA +G++E  EAQI VE   ++   +G++L+
Sbjct:   12 ARR--GVHTTRILASTAPAAADASSGDNLILNFSLPAASIYRNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHETGQAPEKFFVSGGFALTHANSVTDIAVVEAAKLEDIDAEEVPKIYAEAMKDYNAAAEGSKEKVEAQIEVEVAKSLAGALGVALT 174
[Close]
BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Match: A0A7S1DDA2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDA2_CYCTE)

HSP 1 Score: 145 bits (366), Expect = 1.620e-37
Identity = 75/143 (52.45%), Postives = 103/143 (72.03%), Query Frame = 2 
Query:  236 AASTMMKLNFCLPHETIYKDKDVDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGK-EPEKFFVSAGFALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAEAQIGVETCVAMGNVIGLSLS 661
            A+S  +KLNF LPHETIY   +V QVIIPG+ GEYGV   H P ++++K GVLQI+H DG  EPEK+FVS GFALTH TS+T+++  EAV++++ID+ AV   +++AK A  +A  G+   AEAQI +E   +MG  +GL L+
Sbjct:   48 ASSGKIKLNFSLPHETIYSGVEVAQVIIPGSEGEYGVAANHVPYISQLKAGVLQIIHEDGAGEPEKYFVSGGFALTHETSLTEISCPEAVKLDDIDSAAVSKSFDEAKAAYASAEAGSIAQAEAQIAMEVSKSMGMAVGLMLA 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2307.6198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG0_ECTSI1.280e-6871.93ATP-synt_DE_N domain-containing protein n=1 Tax=Ec... [more]
A0A836CK87_9STRA3.050e-4553.49ATP-synt_DE_N domain-containing protein n=1 Tax=Tr... [more]
A0A6U3TGR8_9STRA6.460e-4351.46Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6U0LH08_9STRA1.190e-4254.61Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2PKN7_9STRA2.200e-4253.25Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1UY04_9STRA1.290e-4155.70Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5JNE2_FISSO1.370e-3850.62F-type H+-transporting ATPase subunit delta n=2 Ta... [more]
A0A1E7FRF1_9STRA1.450e-3851.02Epsilon subunit of F1F0-ATP synthase N-terminal do... [more]
A0A4D9CR36_9STRA7.220e-3847.88ATP-synt_DE_N domain-containing protein n=2 Tax=Mo... [more]
A0A7S1DDA2_CYCTE1.620e-3752.45Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2307contigH-paniculata_contig2307:16766..20669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue2.1e-56
Seed eggNOG ortholog2880.D7FXG0
Preferred nameATP5D
KEGG koko:K02112,ko:K02114,ko:K02134,ko:K14573
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko03008,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map03008,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categorymitochondrion
GOsGO:0000275,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005756,GO:0005759,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033178,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042221,GO:0042407,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0044877,GO:0045259,GO:0045261,GO:0045269,GO:0046034,GO:0046390,GO:0046483,GO:0046688,GO:0046907,GO:0046933,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0055086,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0355@1,KOG1758@2759
Ec32 ortholog descriptionATPase, F1 complex, delta/epsilon subunit
Ec32 orthologEc-07_003070.1
EC3.6.3.14
COG Functional cat.C
BiGG ReactioniMM904.YDL004W,iND750.YDL004W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000,ko03009
Exons5
Model size1450
Cds size513
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.4214237-UTR-H-paniculata_contig2307:16765..169161622929649.4214237-UTR-H-paniculata_contig2307:16765..16916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 16766..16916 +
1691480951.0447547-UTR-H-paniculata_contig2307:16765..169161691480951.0447547-UTR-H-paniculata_contig2307:16765..16916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 16766..16916 +
1622929649.5279274-UTR-H-paniculata_contig2307:19883..206691622929649.5279274-UTR-H-paniculata_contig2307:19883..20669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 19884..20669 +
1691480951.0983536-UTR-H-paniculata_contig2307:19883..206691691480951.0983536-UTR-H-paniculata_contig2307:19883..20669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 19884..20669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.4412277-CDS-H-paniculata_contig2307:16916..169811622929649.4412277-CDS-H-paniculata_contig2307:16916..16981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 16917..16981 +
1691480951.0598063-CDS-H-paniculata_contig2307:16916..169811691480951.0598063-CDS-H-paniculata_contig2307:16916..16981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 16917..16981 +
1622929649.4605103-CDS-H-paniculata_contig2307:17950..180441622929649.4605103-CDS-H-paniculata_contig2307:17950..18044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 17951..18044 +
1691480951.067714-CDS-H-paniculata_contig2307:17950..180441691480951.067714-CDS-H-paniculata_contig2307:17950..18044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 17951..18044 +
1622929649.472739-CDS-H-paniculata_contig2307:18976..190781622929649.472739-CDS-H-paniculata_contig2307:18976..19078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 18977..19078 +
1691480951.075569-CDS-H-paniculata_contig2307:18976..190781691480951.075569-CDS-H-paniculata_contig2307:18976..19078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 18977..19078 +
1622929649.4893277-CDS-H-paniculata_contig2307:19273..193901622929649.4893277-CDS-H-paniculata_contig2307:19273..19390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 19274..19390 +
1691480951.0830657-CDS-H-paniculata_contig2307:19273..193901691480951.0830657-CDS-H-paniculata_contig2307:19273..19390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 19274..19390 +
1622929649.507146-CDS-H-paniculata_contig2307:19748..198831622929649.507146-CDS-H-paniculata_contig2307:19748..19883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 19749..19883 +
1691480951.0905197-CDS-H-paniculata_contig2307:19748..198831691480951.0905197-CDS-H-paniculata_contig2307:19748..19883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 19749..19883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2307.6198.1prot_H-paniculata_contig2307.6198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2307 16917..19883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2307.6198.1

>prot_H-paniculata_contig2307.6198.1 ID=prot_H-paniculata_contig2307.6198.1|Name=mRNA_H-paniculata_contig2307.6198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MLGVLARRAAGTATGPVLRSARFSTEAAAASTMMKLNFCLPHETIYKDKD
VDQVIIPGAAGEYGVTMGHSPVVAEMKPGVLQILHGDGKEPEKFFVSAGF
ALTHPTSVTDVTAIEAVRVEEIDADAVKAEYEKAKLAMTAATDGTREHAE
AQIGVETCVAMGNVIGLSLS*
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mRNA from alignment at H-paniculata_contig2307:16766..20669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2307.6198.1 ID=mRNA_H-paniculata_contig2307.6198.1|Name=mRNA_H-paniculata_contig2307.6198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3904bp|location=Sequence derived from alignment at H-paniculata_contig2307:16766..20669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCAAAATCCGCACATTTTACGGAGTTTTGCCGTCGGTCATTCCGTCGT
TCACGGCCATACTGAGCAAGATTCATAGACGGACGGTTGCCGCCTAGTGA
GTGCGTCGCCGCAGTGCTAACTACAGGCAGGCCACATATTTCATCTAAAT
CATGTTGGGAGTTCTTGCAAGGCGCGCGGCAGGTACGGCCACCGGGCCAG
TGCTTCGATCTGCCAGGTACACGACTGTATTGTAGTGCTCGGAATCGGAC
CCGTACCACACCCAAATTGTGCAGAACTCTGCAATCTATATCGACCACAA
GACGGTATGCCCTGCGCGCACGCGATAGCTGGGGGCGTAAGGTGTTGTAG
AAATGCCAAGCCATTTACGTGCTTGCGGTGCTCTTTGTTATTGAGAGTTT
TTCGCTGGTGGCCAACTCGATGTACGTCGGTGTATCTGTACGGTTGTGCG
ACAGTACAGTCAGAGGTAAGTGAGTCCTCGAAAGGCTTTGAGTTGGTCAA
TCCTGTCCCCAGGGGAGAAAGTGGCAGAGAAGCTAATAGCGCTCGCGCAG
CTATCGCTTCTGTAGCGTGCTGTTGCTGAGGTCGTGTACAGCTGGTGTCG
TATGGATGTTCCTACATCCCCAACATGTTTTAACCCTCGGGTACTCCTCT
GTAGTGTCATTTGTGCTGGTGTACCTCTTTGCCGTACGGCCTTGCAGAGC
CTAATATTGCATTCTCCCAGGGGCTAGCAAGTCTTCGAAGAGGCACGATT
GGTCTGCTTACACATGGTTTTGCTACTGCACTGCACTCCATTTGGGCATG
AGACACTTTGAAGAGCTGGCAAATCCACACCCTGGAGATGTGTCACCCCT
TCTAATGATATCATCATGTCCCTCCAGTGCTTTTTGCATCTGCATGTTTT
TGCCGCAATATATCGTTGGATGTGCCGTGTTAGGTGTCCTTATTGTGATG
TACTAGTCTATATGCGTGTTTTTCCTATATTACAACGGAACGAGCGAATT
TTCTTGTACCGTACCTACTCTAGGTGTATAAGCTGTCACATGAGTTGCCC
GTAAATATATGATGGGACACCGGGTTCTCGAAATCAAAGTCTTGCCTTGA
AGTGTTCTTCTCCACACTTTTACGTAGTGTTCGATGATAGCGACAATTTC
GCCTGCACATTCTCGTCTTCATTATTTTGTTCCAGGTTTTCCACCGAGGC
GGCGGCAGCATCAACAATGATGAAGCTCAACTTCTGCTTGCCGCACGAGA
CCATCTACAAGGACAAGGATGTTGATCAGGTATGTACTCTGAAGCTTACC
AGCCCGCAGTACGCCGTTTTTTCGCCTGTAATCCTGGGACCGTGTACGAA
GTTTTTGGTACAGAGGTAAAGGTGGGCACTGGCCGGTTAGAGACAGCCAA
ATGTGCGTTTGAGTTCACCTAAGGGTGTTGGTTCAAAAACACCATCAACG
AATTTGACAGACCTGAGACTGGCGTAAAGCCGTCGCGTACTCACGATTTT
CCCCCCTCCGTTTCTCTTTAAAAAAACATGCCCCAGAATTCTGGAATCCG
GAAAGCTGTGTTTGCCGTCACCATGGTAACACTCGCGAAATGGTCTTCAT
AAAAACATTTTGTGTTCGCCTGAGTTTCGAAATTAACTGGTGTGTTCTAT
GTGCCTCGGACCATCCATGACTTCTAATAATGTTTGTAAAAGGATTTGAC
AGCAGTGGGTAGTTTATTTTTGTGTCTCCTCATTCGGAACTCGGAAAAAC
ACCTTCAATTTTTGTGAATCCTAATGCAAGTATTTATATCTGTCCCGTAG
ATGGAAGGTTTTCCCCAGGGCTTGCACAACTCTTTGTATGAGGTATCTTT
TTGCCTCTTGCTTGTACCGTGTACCATGAGGCTCAGCGGAACCTACCATA
TAAAATAAAAATATGATGAACCTCTACTTGGTTTTTTAATTACTCCCTGC
TCTCGTGTTGTAACCGTTGGTATGTTCCTGTGAATTTAAAATAGAGGAAA
CACTATCATTCGCGTATACCCTTAGTGTGTCTCTTGTGGATCCTACTTGA
AAAAAAACGATTTGTCTGATGAGCGTCTCCAGCACAACGCTCACGATCGG
AAGCAACAGCCACTGCTGAGCTACTCACGACGGTGAACTGTACAGTGGTT
GACGGAAGAACGTCGAATTATGCACTCTCTTGATGAGGAACGAACTTTCC
AAACTTGACAGGTGATCATTCCGGGCGCGGCGGGCGAGTACGGTGTGACC
ATGGGACACTCTCCTGTCGTGGCAGAGATGAAGCCTGGGGTTTTGCAGAT
TCTTCACGGTGACGTGAGTTGCGGATATGTGTTTTTTATTCTTTTAAGAT
TATGTTTTTATTCACTTTTTTATAATGCAGCACGTGCAAAGTCATGTGTA
TATATCAAATGCCATGTTGCTTTGACGTGCACTCATGATATGTTCTTTTA
TATGTCGTTTAGTCCATTGACCTTCATTTCATGTGTTGAAAATACGTACT
GTATACAGGGCAAAGAACCGGAGAAGTTTTTCGTCTCTGCTGGGTTCGCC
CTGACACATCCGACTTCCGTTACCGACGTAACTGCCATCGAGGCCGTGAG
GGTGGAGGAAATCGATGCGGATGCGGTGAGCTTTGCAGTCATGAAAATAA
AGTTGTTCACTGTCGACTGTGTTCGCAGTTACTAGCACGTGCCATGTATT
TTTCGTGTCTTTTTCTGAAGTATATTGGAAGTTTTTCACCTGTGGTGAGA
CATTTAGTAAACAGGAGAGTTCGAACCTTTTCCGCTTGTTAGAAGACTGT
CTTGAACCTGCTGTATCAAATCCACCCTCCTTTACTGAACTATACAACCG
CAAATCCTTTCAAATTCATGCAACATCAGCTGCATGTCAAGTCGAGTCTC
TTCAGCTGATGAATTTTTGCAGTGCCTTCGTTGCCTTATTGTATCCTCTA
CTCGTTGATTGCGTGACTGGATTCATTGAACAGGTCAAGGCTGAATACGA
GAAGGCCAAACTAGCCATGACAGCAGCGACAGATGGCACTCGCGAACATG
CCGAGGCACAGATTGGCGTGGAAACGTGCGTCGCCATGGGAAACGTGATC
GGCTTGTCGCTATCCTAGTGCCTCTTCATGACTTCTCTTCTAGTGGGTCG
ACATCCGGTGTTTCGTATTTTTAAATTTGGAGTAAAAAGAACATTTTTTT
TTTCTCATTTGACCGGTGTCTGTTTGCTACTGTTTGTGTCGACAAACTAT
ACTGTGTCCTGTAACCAACGTTATTGTAACGTGATTAGGTGAAGCGGTAC
GTATTGCACGGGCTCGTATCGGAAGTATCATTTGTTGTGTCCGGTCTGAA
GTACAATTTTCCACACACCACGTGAGGAATGAGTTCGGATCGTGTTGTTT
TCGATACCACAAGCTATTTTTCCCGATCTCTTGGACACGGTTGATCTTGT
ACCCTGCTGGACTGGGCAAGAGGGATGCCCTCGTGGTCGTTCAAAATAAA
GGCTAGTCTCAAATTTTTCATATCGAATATCTGTGGGCTCGCCTTCGCAT
ATTAATTAGGCAATGTGATCGTGTGGGGTGAAGGAGAGTTTTTTTTTGCT
AGTATCATACAAAGAAAGACGTCCTCAACTGATGACTTTTTGAATATCCG
CGTAACGGATAAGGTGACGCGATCGACATTGATGAGCGAAGGACCAGATT
GATGGAATGTTGTTCCTTCAGCAGTGAGTTTGCTGCCTCCTGCCTCCTGT
GGTTCCATGACGAAAAAAGAACAGCAAGATCGACAAGATTCTCAACATAC
AAAGACAACCTCGCGTTTTCCTACTTCTCATCATTTCAGATGGATCATTT
CGTCAACTTGTAGATGAATTGAGGAATGATTCTAACGGAGAGGAAACACG
TTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2307:16766..20669+

>mRNA_H-paniculata_contig2307.6198.1 ID=mRNA_H-paniculata_contig2307.6198.1|Name=mRNA_H-paniculata_contig2307.6198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig2307:16766..20669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGGAGTTCTTGCAAGGCGCGCGGCAGGTACGGCCACCGGGCCAGT
GCTTCGATCTGCCAGATGTTGGGAGTTCTTGCAAGGCGCGCGGCAGGTAC
GGCCACCGGGCCAGTGCTTCGATCTGCCAGGTTTTCCACCGAGGCGGCGG
CAGCATCAACAATGATGAAGCTCAACTTCTGCTTGCCGCACGAGACCATC
TACAAGGACAAGGATGTTGATCAGGTTTTCCACCGAGGCGGCGGCAGCAT
CAACAATGATGAAGCTCAACTTCTGCTTGCCGCACGAGACCATCTACAAG
GACAAGGATGTTGATCAGGTGATCATTCCGGGCGCGGCGGGCGAGTACGG
TGTGACCATGGGACACTCTCCTGTCGTGGCAGAGATGAAGCCTGGGGTTT
TGCAGATTCTTCACGGTGACGTGATCATTCCGGGCGCGGCGGGCGAGTAC
GGTGTGACCATGGGACACTCTCCTGTCGTGGCAGAGATGAAGCCTGGGGT
TTTGCAGATTCTTCACGGTGACGGCAAAGAACCGGAGAAGTTTTTCGTCT
CTGCTGGGTTCGCCCTGACACATCCGACTTCCGTTACCGACGTAACTGCC
ATCGAGGCCGTGAGGGTGGAGGAAATCGATGCGGATGCGGGCAAAGAACC
GGAGAAGTTTTTCGTCTCTGCTGGGTTCGCCCTGACACATCCGACTTCCG
TTACCGACGTAACTGCCATCGAGGCCGTGAGGGTGGAGGAAATCGATGCG
GATGCGGTCAAGGCTGAATACGAGAAGGCCAAACTAGCCATGACAGCAGC
GACAGATGGCACTCGCGAACATGCCGAGGCACAGATTGGCGTGGAAACGT
GCGTCGCCATGGGAAACGTGATCGGCTTGTCGCTATCCTAGGTCAAGGCT
GAATACGAGAAGGCCAAACTAGCCATGACAGCAGCGACAGATGGCACTCG
CGAACATGCCGAGGCACAGATTGGCGTGGAAACGTGCGTCGCCATGGGAA
ACGTGATCGGCTTGTCGCTATCCTAG
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