mRNA_H-paniculata_contig2307.6195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2307.6195.1
Unique NamemRNA_H-paniculata_contig2307.6195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: D7FXF9_ECTSI (Anaphase-promoting complex subunit 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF9_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.080e-64
Identity = 83/90 (92.22%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFREAQPATEED 342
            ++WHGVAVWKWDVN+DVCGICRLAFDACCPDCTVPGD+CSPVWGQCNHTFHMHCVLKHLQFA QQNRPQQCPLCRQEWQFREAQPAT E+
Sbjct:   14 RRWHGVAVWKWDVNEDVCGICRLAFDACCPDCTVPGDNCSPVWGQCNHTFHMHCVLKHLQFATQQNRPQQCPLCRQEWQFREAQPATAEE 103
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: A0A835ZF45_9STRA (Anaphase-promoting complex subunit 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF45_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.920e-41
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFREA 321
            K+WHGVAVWKWDV DDVCGICR+A+DACCPDCT+PGD+C PVWG+CNH FH+HC +K L    Q      CP+CR++++F+E+
Sbjct:    6 KRWHGVAVWKWDVEDDVCGICRMAYDACCPDCTMPGDNCPPVWGECNHAFHIHCAMKWLASQAQAGGGAPCPMCRRDFKFKES 88
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: A0A6A4K288_APOLU (Anaphase-promoting complex subunit 11 n=6 Tax=Cimicomorpha TaxID=33354 RepID=A0A6A4K288_APOLU)

HSP 1 Score: 135 bits (340), Expect = 2.320e-39
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFRE 318
            K W+GVA W+W  NDD CGICRLAFD CCPDC VPGD C  VWGQC+H FH+HC++K L  +QQ N  QQCP+CRQEW+FRE
Sbjct:    6 KSWNGVATWRWLANDDTCGICRLAFDGCCPDCKVPGDECPLVWGQCSHCFHIHCIMKWLN-SQQVN--QQCPMCRQEWKFRE 84
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: W7T4Y4_9STRA (Anaphase-promoting complex subunit 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4Y4_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.950e-39
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFR 315
            K+WH VA W+WDVND+ CGIC  AF+ACCPDC +PGD C PVWG CNH FHMHC++K L   Q  N+ Q CP CRQ+W+FR
Sbjct:    6 KRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMKWLNSQQNANK-QTCPACRQKWEFR 85
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: H3G666_PHYRM (Anaphase-promoting complex subunit 11 n=19 Tax=Oomycota TaxID=4762 RepID=H3G666_PHYRM)

HSP 1 Score: 134 bits (338), Expect = 5.100e-39
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFR 315
            K+WHGVA W W V+++ CGICR AF+ACCPDCT+PGD C PVWG CNH FHMHC++K L+  Q     Q CP+CRQ+W+FR
Sbjct:    8 KRWHGVATWTWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACNHAFHMHCLMKWLESLQSMR--QHCPMCRQDWKFR 86
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: A0A6A3FJP8_9STRA (Anaphase-promoting complex subunit 11 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FJP8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.510e-39
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFR 315
            K+WHGVA WKW V+++ CGICR AF+ACCPDCT+PGD C PVWG C H FHMHC++K L+  Q     Q CP+CRQ+W+FR
Sbjct:   21 KRWHGVATWKWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACTHAFHMHCLMKWLESLQSMR--QHCPMCRQDWKFR 99
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: G4YWI2_PHYSP (Anaphase-promoting complex subunit 11 n=2 Tax=Phytophthora TaxID=4783 RepID=G4YWI2_PHYSP)

HSP 1 Score: 132 bits (333), Expect = 3.520e-38
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFR 315
            K+WHGVA W W V+++ CGICR AF+ACCPDC +PGD C PVWG CNH FHMHC++K L+  Q     Q CP+CRQ+W+FR
Sbjct:   14 KRWHGVATWTWGVDEECCGICRYAFEACCPDCAMPGDGCPPVWGACNHAFHMHCLMKWLESLQSMR--QHCPMCRQDWKFR 92
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: A0A3Q3DFZ3_HIPCM (Anaphase-promoting complex subunit 11 n=3 Tax=Actinopterygii TaxID=7898 RepID=A0A3Q3DFZ3_HIPCM)

HSP 1 Score: 132 bits (332), Expect = 3.830e-38
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFRE 318
            KKW+GVA W W  ND+ CGICRLAF+ CCPDC VPGD C  VWGQC+H FHMHC+LK L   Q Q   QQCP+CRQEW+F+E
Sbjct:    6 KKWNGVASWLWVANDENCGICRLAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQQVQ---QQCPMCRQEWKFKE 84
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: A0A669CI91_ORENI (Anaphase-promoting complex subunit 11 n=8 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A669CI91_ORENI)

HSP 1 Score: 131 bits (330), Expect = 7.730e-38
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFRE 318
            K+W+GVA W W  NDD CGICR+AF+ CCPDC VPGD C  VWGQC+H FHMHC+LK L   Q Q   QQCP+CRQEW+F+E
Sbjct:    6 KQWNGVASWLWVANDDNCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQQVQ---QQCPMCRQEWKFKE 84
[Close]
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Match: A0A7L4BQT3_9AVES (Anaphase-promoting complex subunit 11 (Fragment) n=10 Tax=Sauria TaxID=32561 RepID=A0A7L4BQT3_9AVES)

HSP 1 Score: 131 bits (329), Expect = 1.100e-37
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   73 KKWHGVAVWKWDVNDDVCGICRLAFDACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQEWQFRE 318
            + WHGVA W W  ND+ CGICR+AF+ CCPDC VPGD C  VWGQC+H FHMHC+LK L   Q Q   Q CP+CRQEW+FRE
Sbjct:    6 RSWHGVAAWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQQVQ---QHCPMCRQEWKFRE 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2307.6195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF9_ECTSI3.080e-6492.22Anaphase-promoting complex subunit 11 n=1 Tax=Ecto... [more]
A0A835ZF45_9STRA1.920e-4163.86Anaphase-promoting complex subunit 11 n=1 Tax=Trib... [more]
A0A6A4K288_APOLU2.320e-3968.29Anaphase-promoting complex subunit 11 n=6 Tax=Cimi... [more]
W7T4Y4_9STRA4.950e-3964.20Anaphase-promoting complex subunit 11 n=2 Tax=Mono... [more]
H3G666_PHYRM5.100e-3962.96Anaphase-promoting complex subunit 11 n=19 Tax=Oom... [more]
A0A6A3FJP8_9STRA7.510e-3962.96Anaphase-promoting complex subunit 11 n=3 Tax=Phyt... [more]
G4YWI2_PHYSP3.520e-3861.73Anaphase-promoting complex subunit 11 n=2 Tax=Phyt... [more]
A0A3Q3DFZ3_HIPCM3.830e-3867.07Anaphase-promoting complex subunit 11 n=3 Tax=Acti... [more]
A0A669CI91_ORENI7.730e-3865.85Anaphase-promoting complex subunit 11 n=8 Tax=Pseu... [more]
A0A7L4BQT3_9AVES1.100e-3764.63Anaphase-promoting complex subunit 11 (Fragment) n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2307contigH-paniculata_contig2307:4844..7866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D7FXF9
Preferred nameANAPC11
KEGG koko:K03358,ko:K14972
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005730,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0022414,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034450,GO:0036211,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045132,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046914,GO:0048285,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061630,GO:0061659,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0090068,GO:0097602,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.cullin family protein binding
EggNOG OGsCOG5194@1,KOG1493@2759
Ec32 ortholog descriptionPutative subunit of the Anaphase Promoting Complex
Ec32 orthologEc-07_003050.1
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons3
Model size348
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2307.6195.1prot_H-paniculata_contig2307.6195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2307 4844..7866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.0832756-CDS-H-paniculata_contig2307:4843..49201622929649.0832756-CDS-H-paniculata_contig2307:4843..4920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 4844..4920 +
1691480950.833289-CDS-H-paniculata_contig2307:4843..49201691480950.833289-CDS-H-paniculata_contig2307:4843..4920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 4844..4920 +
1622929649.0983555-CDS-H-paniculata_contig2307:7072..71911622929649.0983555-CDS-H-paniculata_contig2307:7072..7191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 7073..7191 +
1691480950.8480213-CDS-H-paniculata_contig2307:7072..71911691480950.8480213-CDS-H-paniculata_contig2307:7072..7191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 7073..7191 +
1622929649.1119974-CDS-H-paniculata_contig2307:7714..78661622929649.1119974-CDS-H-paniculata_contig2307:7714..7866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 7715..7866 +
1691480950.858716-CDS-H-paniculata_contig2307:7714..78661691480950.858716-CDS-H-paniculata_contig2307:7714..7866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 7715..7866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2307.6195.1

>prot_H-paniculata_contig2307.6195.1 ID=prot_H-paniculata_contig2307.6195.1|Name=mRNA_H-paniculata_contig2307.6195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MTLSNCCRRGLATRRQAGKDEGHCKKWHGVAVWKWDVNDDVCGICRLAFD
ACCPDCTVPGDSCSPVWGQCNHTFHMHCVLKHLQFAQQQNRPQQCPLCRQ
EWQFREAQPATEEDS*
back to top

mRNA from alignment at H-paniculata_contig2307:4844..7866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2307.6195.1 ID=mRNA_H-paniculata_contig2307.6195.1|Name=mRNA_H-paniculata_contig2307.6195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3023bp|location=Sequence derived from alignment at H-paniculata_contig2307:4844..7866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCTCTCAAATTGCTGCAGGAGAGGTCTAGCAACTCGACGGCAGGC
AGGAAAGGATGAAGGTCACTGTAAAAAGTGAGTCCTAGGTTGTGTCATTT
CTCTACTTTATTTTAGGAGTGCAAGGAAGAGATCATGCGTCCAACCTGCG
AAGATAACGGTGTTTGTTACGGTGATGCGTCTGGTTCGTGACTTCACCTG
TAGCAGCTGGGCATCTCTGTGTGCGGCTCATTGATTCCAGCTGTAATGCC
GGAGACCAAATACTACTGTAATGGACTTTTTCGATCATAAAGATAATCTC
CCCACGCCTTTAATCATTTACCCTCTGGCGTATACATGTTACTCGTACGA
TGGAGCCACCTCACAGACGACTGACACACAGATGTGTCAACTCAGGTAAT
TCAGCTGTTCAGCTGAGCTACCGCTGGTGTAGCTGTCACATAATATGTCC
TTTCGTTGAAGAACATGCTTTCTCCCCAGGGACAAATATGACTGGAGCAT
TCGCAACTATATCGAACATCGTTTTTTGTCTTTTGGGTAAACACGTCTGT
ATTTATTCGTTTACAAGTCTATGAATGATCACGCTGCAGATGGTTACCAG
GTAGTCGTGCACTTGGCGAACAGTCACACATGCAGGTTCTGTTTTTTTTT
TCGGATGGTTCTGTACATTACTCGTCACGTGGACATCTTTCCCAACTCAA
ACAGATACAGTATTCGATCCAGATTTCTCGTATTACTCATGCCCTGTATT
TGTATTGTCCGGGGGGGTGCATGCTTTCTCTCGTGCTTTGTTGTCTTGTT
CGACTGCTGCGCAGGGTGAGATATACACAGAAGACGAAAGCCTCATGAAG
CAAGGAAAGCGACGTACATTATATGAGGCGACCACCCAGAGACTATCGCG
ACGCACATGGCAGACTTCTGTTGATGTTTGCCTTTTTAAGTTGTGAGCGC
CAGTCTAAAGTCTGACTGTGATCTTTGCAACAGCTGGCTCAAGAATGTGC
TTGTGTTACGTCATTGCGGCAAGCTTCAATCCCTTCAGCACGGAAAATAT
CGACGTCAAGGAAGGTTCTTGATATGGATACCTTTGAACACCATTCGTAA
AGGCTAATTATTCATGAAATTGTGAATGAAGAAGTCAACCGTCAAGTGTC
AAAATGTTAGCCATGCGGTGTTACGGGTGGTCATTTACGTGGCTCACCTA
CTGTTGATATTTGTGGTACTTCGCTAGAGCCCAATGGTGTGCCACAGATT
ATCATTCTGTAGGGCAGATCCTCGGGGAAGGCGTAGTCGCAAGTGCTGCC
ATCGAGAAGATATTTCAAAATAAGCCGTATGTACCATACCCTTCGACCGT
CACCGTCACCGTGGAGTGGCTATCGTTTAGACCACGGACAACTTAGCAAT
ACAACACTGATGTTCTTCGGGACTCGAGTGCCCTTGAGAATCCGCCGAAA
GGATGGTAACCTGTCTCAGGAGCAAGTAAATGATTTATAACCAAACGGCC
GAAGTGTTCGACGTTCAGGCAGCGCTCGAATTTCTCGGCACATGGGTTGA
TTTGTCGGACCTACAATCCGTCCAAGTAAGGTGTAAACCTCGAACCTTGC
CGAACACAACGGCCAAACGAAACATGATTTCGTCTTCGAAACGATGGGTA
TGTGCTGTAGCTGCCTAGAGAGAAAAGTACAGCGGTTACGCAAGATAGAC
GTGGTGATGCCCATTTCGCAAGACTGACGGTAGAGTAGCTTCGCACTTCC
TGAATGGTGACTTGACTATCTCGATGTGGTCTTTTTACGTCATGTGAACA
TGCCAACATTGGGAAGACGCACTTGTTTCTCATCGCTGGTGTTTGCTGTT
CGTCTGGAGACCGCTTGTTCTCCGTTGTGATGCGGTAAGATCTGTGTCTT
CAACTGTGTCGCTTCGATTCAGACAAGATATAGCACCTAGCATCGTGTGT
GGGCCGTTGACGCGAAAACCTTGAACGGGTATGTGCGAGCCCATCGCTGA
CTGCTTGTTTATCAACGGGTGCCGTGACATCAATGTGTCGAAGGTTGTGT
GAAAGTGGGGTGCAACAGAGATGTACGTGATAAATTTCAGCTGATTGACC
CCTGATGCGTCACATCACATCTCTACTCACTGCACCAGCGCGCTTCGTAT
TCCCCACAGCAAAAACATATGGGTTGTATCCCTGAGCGCGAATAAGCTTT
CTTACTCCTCCTATTTTTTGCTGTTGCAGGTGGCACGGGGTGGCGGTATG
GAAGTGGGACGTAAATGACGACGTTTGCGGCATTTGCCGGTTAGCTTTCG
ATGCCTGTTGTCCAGACTGCACCGTGCCGGGTGACAGCTGTTCGCCAGGT
ATTCCGATTGCCTAATGGTATTGTTGACTCGGTATATGCGTTGAGAAGTG
CCGCCCTCCTGTTTTCAGGGCGGAGTTTAGCTATCATTCTGTATTTCGCC
TTCTGCTCGCGGTAGATCCCCTTGTGTCACGCTCCCTACACTAGTATCGT
TACCAAAACCAGTTGGTGTACATCGAGCCCATACAGTTTAGATGCAGACT
GGCACCAACCAGGCCAATCCTAAACGCTACAGGCATACACCAATCACCGT
TGATGATGCCCAAGTTGTGAAGGAACACCTGTGATCATGCCTCCTGTATT
ACGAAGTGAACATCTTCCTTGCTCCAAGTTTACGACCTATAATATCAAGT
TAGAGATGATGAAGATTGCTGCCGTTGCCTGCTTCATTCAGTTCTATAAA
AGTGCTATACGCATCAAGTGTACCGCCTCCCTGCATGTGCTCCGCCCGTC
CTGCCCCGTGCTTTGCTCACGTCTCTTTGGGTGATGGTGGCGCTGCTGGC
TCACGCGTTTTCATTGGACAGTATGGGGTCAGTGCAACCATACTTTCCAC
ATGCATTGCGTACTCAAGCATCTGCAATTTGCTCAACAGCAAAATCGACC
GCAACAATGTCCACTCTGCAGGCAAGAGTGGCAGTTCCGAGAGGCACAAC
CAGCAACAGAAGAGGACAGTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2307:4844..7866+

>mRNA_H-paniculata_contig2307.6195.1 ID=mRNA_H-paniculata_contig2307.6195.1|Name=mRNA_H-paniculata_contig2307.6195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig2307:4844..7866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCTCTCAAATTGCTGCAGGAGAGGTCTAGCAACTCGACGGCAGGC
AGGAAAGGATGAAGGTCACTGTAAAAAATGACTCTCTCAAATTGCTGCAG
GAGAGGTCTAGCAACTCGACGGCAGGCAGGAAAGGATGAAGGTCACTGTA
AAAAGTGGCACGGGGTGGCGGTATGGAAGTGGGACGTAAATGACGACGTT
TGCGGCATTTGCCGGTTAGCTTTCGATGCCTGTTGTCCAGACTGCACCGT
GCCGGGTGACAGCTGTTCGCCAGGTGGCACGGGGTGGCGGTATGGAAGTG
GGACGTAAATGACGACGTTTGCGGCATTTGCCGGTTAGCTTTCGATGCCT
GTTGTCCAGACTGCACCGTGCCGGGTGACAGCTGTTCGCCAGTATGGGGT
CAGTGCAACCATACTTTCCACATGCATTGCGTACTCAAGCATCTGCAATT
TGCTCAACAGCAAAATCGACCGCAACAATGTCCACTCTGCAGGCAAGAGT
GGCAGTTCCGAGAGGCACAACCAGCAACAGAAGAGGACAGTTGATATGGG
GTCAGTGCAACCATACTTTCCACATGCATTGCGTACTCAAGCATCTGCAA
TTTGCTCAACAGCAAAATCGACCGCAACAATGTCCACTCTGCAGGCAAGA
GTGGCAGTTCCGAGAGGCACAACCAGCAACAGAAGAGGACAGTTGA
back to top