mRNA_H-paniculata_contig2307.6194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2307.6194.1
Unique NamemRNA_H-paniculata_contig2307.6194.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: D7FXF8_ECTSI (NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF8_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 2.900e-122
Identity = 170/243 (69.96%), Postives = 200/243 (82.30%), Query Frame = 3
Query:  108 LSKRWP--PILDNVARALNRVTTFVPLPPA-TNSAPEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
            +S+R P   +L    RALNRVT+FVP PP+  +   EK++V+QVHP G  PSFTLALG+A+ +SL+ +GHQVRVTNLY+E F+  LGG EH+ F+TA+RDG V ED+K H++DLQWCSGL L YPTWWYSFPAILKGW DRTL+PGVAFDLPNG   KP+ +TGFISRLTNI+KVGMVTTFGN FWNVRYVGDPGRRIV+RGLRP FHP CT+LWKGLYDVEKC P+ R +FLEDV  SFR F
Sbjct:    8 VSRRQPLSSLLAGAMRALNRVTSFVPPPPSGKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGQVAEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNG-VEKPHPKTGFISRLTNIRKVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 249          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A835ZJZ3_9STRA (NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJZ3_9STRA)

HSP 1 Score: 236 bits (602), Expect = 4.800e-73
Identity = 112/228 (49.12%), Postives = 155/228 (67.98%), Query Frame = 3
Query:  150 ALNRVTTFVPLPPATNS--APEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
            ALN+ +     PPA N+    ++VL++  HP     S++ AL  A+  +L+  GH VRV +LY E FE  L   E +T++TAYR+G +   +  H+E L+W  GL  VYPTWWY+ PAILKGWFDR L PG  FD+P+G+T   N  TG ISRLTNIK++G+V+T+GN + +V+YVGDPGRR+++RGLR   HP C+VLW GL+ VE C  ++R +FLE V++ F  F
Sbjct:   27 ALNKCSCH--FPPARNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTT-PTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF 251          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: W7TIP7_9STRA (Nad h dehydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIP7_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.620e-62
Identity = 106/242 (43.80%), Postives = 146/242 (60.33%), Query Frame = 3
Query:  120 WPPILDNVARALNRVTTFVPLPPATNS-APEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGH---VPED--IKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
            W P+   +A A NR T+F+P PP   S  P +VL++  HP G   SF  A  +    SL+ +GH+V+  +LYEE F+P +   + + ++    D H    P+   +  +I+ L+WC  L  VYPTWWY+ PAILKGW DRT +P  AF LP   T  P    G +  L NIKKVG+VTT+G+ +  +RYVGDPGRRI+ARGLRP F  +CT+LW G+Y  +  +  +RE FL +V    R F
Sbjct:   13 WDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTS-SFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPT-PTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A6N6VDW8_9HYPH (Flavodoxin family protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VDW8_9HYPH)

HSP 1 Score: 176 bits (447), Expect = 1.480e-50
Identity = 87/202 (43.07%), Postives = 124/202 (61.39%), Query Frame = 3
Query:  210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRD-GHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKE 812
            KVLV+  HP     SF  AL   + ++L+  GH VR+T+LY ENF+PRLG  E + + T  ++  +VPE    HI ++QW   L  V+PTWWY  PA+LKGW DR  +PGV+F +P G           +  LTN+K VG +TT G+ +W ++ VG+P RR + RG+R + HPRC  LW   Y ++  TP+ R+S+L  V+E
Sbjct:    2 KVLVVYSHPVPE--SFCAALRDTVVDALKAKGHDVRLTDLYAENFDPRLGCQERRDYHTEGKNLTYVPE----HIANIQWAEALIFVFPTWWYGLPAMLKGWLDRVFVPGVSFTMPKGQMP-------IMPALTNVKLVGGITTCGSPWWWMKIVGEPHRRTLLRGIRGSCHPRCKTLWMAHYRMDSSTPESRKSYLALVRE 190          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A7S0J3Q7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J3Q7_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 4.850e-48
Identity = 89/237 (37.55%), Postives = 135/237 (56.96%), Query Frame = 3
Query:  120 WPPILDNVARALNRVTTFVPLPPATN-SAPEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLT-AYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGV--AFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESF 818
            W  +    A  LNR+T+ VP PPA   S P ++L+I  HP  +  SF++AL  A+       GH++R  +LY ENF+P L   E   +   A     +  D+++ ++DL+W   L  VYPTWW++ PA+LKG+FDR L+PG   A+D P  ++G+     G    LTN+K+V  V+T+G         GD GR  ++  +RP F P+CT LW GLY ++ C+ ++R  F   V+E+ 
Sbjct:    3 WNSMTRWAAIKLNRLTSHVPPPPAEEGSGPRRILLIHAHPRAD--SFSMALADAVQAGAVDGGHELRRRSLYAENFQPALTSSERGVYFDGAGGAARLASDVRSQLDDLRWADSLVFVYPTWWFNLPAMLKGYFDRVLVPGPEGAWDFP--ASGRSLAANGLAPNLTNVKRVCAVSTYGAPRHIAFLAGDNGRNTISTAIRPLFDPQCTCLWLGLYSMDACSREERTQFAAHVRETI 235          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A7S0LIU4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIU4_9EUKA)

HSP 1 Score: 169 bits (429), Expect = 3.200e-47
Identity = 90/241 (37.34%), Postives = 136/241 (56.43%), Query Frame = 3
Query:  111 SKRWPPILDNVARALNRVTTFVPLPPATNSAPEK-VLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEH-QTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGV--AFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFR 821
            S  W  +    A  LN++T+ VP PP      ++ +L+I  HP  +  S++ AL  A+ E     GH++R   LY E F+  +   E  + F  A  +  +  D+++H+ DL+W   +  VYPTWW++ PA+LKG+FDRTL+PG   A+D P GS G+P    G +  LTNIK++  V+T+G         GD GR  ++  +RP F P+CT LW GLY ++ CT + R  F   V+E+ R
Sbjct:    6 SMFWNALTRWTACKLNKLTSHVPPPPREEGKCKRHILLIHAHPRAD--SYSTALADAVHEGAVAGGHELRRRTLYAEGFQSAMTDSERGKYFDVASGESRIQGDVRSHLADLRWADSIVFVYPTWWFNMPAMLKGYFDRTLVPGPGGAWDFP-GSGGEP-ASNGLVPYLTNIKRIAAVSTYGAPRHITFLAGDNGRNTISTAIRPIFDPQCTCLWLGLYSMDDCTKEDRSRFAVRVRETIR 242          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A4D9CVE7_9STRA (Flavodoxin_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.330e-45
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 3
Query:  417 IKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
            +  +I+ L+WC  L  VYPTWWY+ PAILKGW DRT +P  AF LP  ++  P++  G +  L NIKKVG+VTT+G+ +  +RYVGDPGRRI+ARGLRP F  +CT+LW G+Y  +  +  KRE FL +VK   R F
Sbjct:   18 LLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPPSV-VGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAKREEFLAEVKAYMREF 153          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A8J7IJF2_9RHOB (NAD(P)H-dependent oxidoreductase n=1 Tax=Arenibacterium arenosum TaxID=2798803 RepID=A0A8J7IJF2_9RHOB)

HSP 1 Score: 158 bits (400), Expect = 1.580e-43
Identity = 78/205 (38.05%), Postives = 122/205 (59.51%), Query Frame = 3
Query:  210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRG 824
            + LVI  HP  +  S+  AL    C +LE +GH +RV +LY E+F+P L  P+   + TA ++  +  D++ H+E ++W   L LVYPTW Y  PAILKGW +R  +PGVAF++P+G   +         +L NI++  ++TT G+ +W +R + DPGR ++ RG R  F  +C V W  L+D+   T   R +FL+ V+++  G
Sbjct:    2 RTLVIFAHP--STESYGAALLDTACRALEAAGHDLRVIDLYREDFDPVLREPDWTLYKTAPQE--LIPDVRAHVEAMEWADSLVLVYPTWMYGPPAILKGWLERVWLPGVAFEVPSGMKKRAQ------GKLDNIRRFTVITTSGSPWWWLRLIRDPGRSMMLRGFRVLFSRQCRVKWLQLHDMNHRTDHDRRAFLDRVQQTLAG 196          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A7X4DQ99_9RHOB (NAD(P)H-dependent oxidoreductase n=1 Tax=Boseongicola sp. SB0675_bin_26 TaxID=2604849 RepID=A0A7X4DQ99_9RHOB)

HSP 1 Score: 158 bits (399), Expect = 2.360e-43
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 3
Query:  210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFR 821
            ++LV+  HP  ++ SF  AL +  C +L  +GH+VRV +LY E FEP L   E   +L   R   + +    H++DLQW  GL ++YPTW+Y  PA+LKGW +R  +PGVAF++ +    +P        +L N++    +TT G+ +W +R + DPGR +  RGLRP F P C V W  L+D+   T   R  FL  V+ + +
Sbjct:    2 RLLVVFCHP--SRESFGAALFETACRTLRAAGHEVRVHDLYREGFEPVLSEQEWSDYLPRTRT--IIDKHPDHVDDLQWAEGLVVIYPTWFYGPPAMLKGWLERVWLPGVAFEVADARLKRPK------GKLGNVRLFVGITTSGSPWWWLRLIRDPGRSLWTRGLRPLFSPNCRVTWLQLHDMNNSTENDRTGFLARVERTLQ 195          
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A225NEN9_9RHOB (NAD(P)H dehydrogenase n=1 Tax=Marinibacterium profundimaris TaxID=1679460 RepID=A0A225NEN9_9RHOB)

HSP 1 Score: 158 bits (399), Expect = 3.090e-43
Identity = 87/207 (42.03%), Postives = 115/207 (55.56%), Query Frame = 3
Query:  210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVP-EDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
            + LV+  HP   K SFT A+ + + E L   G +VR+ +LY   F P L   EH+     Y D  +  + I+  IEDL WC  L  VYPTWWY  PAILKGW DR L+PGVAF +P  S G P++R G    L+NI ++G+ TT G  +W  R+VG PG+R + RGLR    PRC   +   Y ++  TP+ R   L  V      F
Sbjct:    2 RALVVYCHP--RKASFTEAVREVVLEKLAAVGAEVRLVDLYAGPFAPVLTAQEHEW----YEDESLNRQGIEQEIEDLTWCDTLIFVYPTWWYGLPAILKGWLDRALVPGVAFLMP--SEGHPDIRPG----LSNITRLGVFTTCGASWWLTRFVGAPGKRTLLRGLRLICAPRCKTTFAAHYLMDSSTPESRAKHLAKVARKMERF 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF8_ECTSI2.900e-12269.96NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus... [more]
A0A835ZJZ3_9STRA4.800e-7349.12NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxI... [more]
W7TIP7_9STRA4.620e-6243.80Nad h dehydrogenase n=1 Tax=Nannochloropsis gadita... [more]
A0A6N6VDW8_9HYPH1.480e-5043.07Flavodoxin family protein n=1 Tax=Parvibaculum sed... [more]
A0A7S0J3Q7_9EUKA4.850e-4837.55Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LIU4_9EUKA3.200e-4737.34Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A4D9CVE7_9STRA1.330e-4552.55Flavodoxin_2 domain-containing protein n=1 Tax=Nan... [more]
A0A8J7IJF2_9RHOB1.580e-4338.05NAD(P)H-dependent oxidoreductase n=1 Tax=Arenibact... [more]
A0A7X4DQ99_9RHOB2.360e-4338.24NAD(P)H-dependent oxidoreductase n=1 Tax=Boseongic... [more]
A0A225NEN9_9RHOB3.090e-4342.03NAD(P)H dehydrogenase n=1 Tax=Marinibacterium prof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2307contigH-paniculata_contig2307:1577..4731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.3
Seed ortholog evalue3.6e-97
Seed eggNOG ortholog2880.D7FXF8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flavodoxin-like fold
EggNOG OGs2S51M@2759,COG2249@1
Ec32 ortholog descriptionFlavodoxin-like fold
Ec32 orthologEc-07_003040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1087
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2307.6194.1prot_H-paniculata_contig2307.6194.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2307 1834..4636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.926563-UTR-H-paniculata_contig2307:1576..18331622929648.926563-UTR-H-paniculata_contig2307:1576..1833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 1577..1833 -
1691480950.7680204-UTR-H-paniculata_contig2307:1576..18331691480950.7680204-UTR-H-paniculata_contig2307:1576..1833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 1577..1833 -
1622929649.0114434-UTR-H-paniculata_contig2307:4636..47311622929649.0114434-UTR-H-paniculata_contig2307:4636..4731Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 4637..4731 -
1691480950.815665-UTR-H-paniculata_contig2307:4636..47311691480950.815665-UTR-H-paniculata_contig2307:4636..4731Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 4637..4731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.9466858-CDS-H-paniculata_contig2307:1833..20431622929648.9466858-CDS-H-paniculata_contig2307:1833..2043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 1834..2043 -
1691480950.7782419-CDS-H-paniculata_contig2307:1833..20431691480950.7782419-CDS-H-paniculata_contig2307:1833..2043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 1834..2043 -
1622929648.9652002-CDS-H-paniculata_contig2307:2697..28111622929648.9652002-CDS-H-paniculata_contig2307:2697..2811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 2698..2811 -
1691480950.788167-CDS-H-paniculata_contig2307:2697..28111691480950.788167-CDS-H-paniculata_contig2307:2697..2811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 2698..2811 -
1622929648.977593-CDS-H-paniculata_contig2307:3479..36821622929648.977593-CDS-H-paniculata_contig2307:3479..3682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 3480..3682 -
1691480950.7993286-CDS-H-paniculata_contig2307:3479..36821691480950.7993286-CDS-H-paniculata_contig2307:3479..3682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 3480..3682 -
1622929648.995755-CDS-H-paniculata_contig2307:4428..46361622929648.995755-CDS-H-paniculata_contig2307:4428..4636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 4429..4636 -
1691480950.807357-CDS-H-paniculata_contig2307:4428..46361691480950.807357-CDS-H-paniculata_contig2307:4428..4636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 4429..4636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2307.6194.1

>prot_H-paniculata_contig2307.6194.1 ID=prot_H-paniculata_contig2307.6194.1|Name=mRNA_H-paniculata_contig2307.6194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
MRLGLSKRWPPILDNVARALNRVTTFVPLPPATNSAPEKVLVIQVHPYGN
KPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYR
DGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAF
DLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIV
ARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF*
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mRNA from alignment at H-paniculata_contig2307:1577..4731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2307.6194.1 ID=mRNA_H-paniculata_contig2307.6194.1|Name=mRNA_H-paniculata_contig2307.6194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3155bp|location=Sequence derived from alignment at H-paniculata_contig2307:1577..4731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCTGCCTCGTTCGTCTGCCTCGTTCGTCTGCCTACTGTTTAAACCACT GTCTGGCTTCCGCAGGGTCATATTGGGTTGGTTTTAAGAGGCTTTATGCG ACTAGGATTGTCCAAGCGATGGCCTCCTATCTTGGACAATGTGGCGAGAG CTTTGAATCGAGTAACGACGTTTGTTCCTCTTCCGCCAGCAACCAACTCT GCCCCCGAGAAAGTACTTGTGATACAGGTACATCCGTATGGGAATAAACC GTCGTTTACTCTGGCACTGGGTAAGGCTCTATGCGAATCGCTGGAGGTTT CAGGTGCGTGTGCAATCATTGTTGTCAATGGCGCAACGATGATGTTGGAG ATTCTGAAAGAAAACTAAGTTCCCGAGACTGTCCATGTTTGTCACTTTCA GATACACATGTATTTAGGTACCCCAATGCGCAGGCAGAGTTGGTGTACAT ACTCTTGATGAACTCGTAGAGCTGGAGCAAGCGTTCCGATGATGTACTTT TCGCGTCTTGTGGGAAGGTGCACGTTTTACACAGTGTTCTGCATTCGCAG CACCGGCAGGCAGCCTTCTGAACCATGTGCATTGTAGTATACAAAAACAA CCAGGATTCTGGAAAATCTTCAAAATCTGGCGGAATTGAAGACTGAATGG GCAGATTTAAGCCCCAACGCACCGACACAGCAGTGCCGGCATGACACCGG GTTGATGTACATAGATGACCCCGGCGTTTTTCTTGCAGCTGCGGTAAATG GTTAAGCGGTAGTTACTTTTTACGCCAGGCTTTATCAGTATCTTAACCAG TACTAGCTCGTACACACAGCTGATGCTTTGTCAAGTCCCTGAGATGCGAG ACGGCAACCCTTCGTGTGACATCAAATTACAGGCTTATGTGTTCGCGGGA AATGCGCTCAACGGTGTTTTTAGGCCTAGGGTAGAGTTGGGGATCTCTGA GAATATTGCATCCGAACATGCGTGATGTCGTTGTCTGCATCTCTTACTCC TGACGGTCCCTCTGAGATATTTCTTCCATGCGCGCGCTCTAATTACCAGG CCACCAAGTTCGGGTAACGAATCTTTACGAAGAAAACTTCGAGCCAAGGC TGGGAGGACCGGAGCATCAGACGTTCCTCACGGCGTATCGAGATGGTCAT GTTCCGGAGGATATTAAGACACATATCGAGGACTTGCAGTGGTGTTCTGG GCTATGTCTGGTCTACCCCACCTGGTGGTACTCGTTTCCTGCGATTTTGA AGGTAGGACAGACATGCGACGAGAGGTAACCCTGCGTACTCTGGTTCAAG GCGGGTAGATACGCTGCATGTGACAAGCCGACAAGGGTAGCCCTGAATCC CGATCCTCCTCATGAGGAGACCGTTATTGTAAAGGAAATCTAAGGGAAAG CCTAGCCAAGTTCTCTCACCTTTAATCTAGCTTCGCTGTAAATATGACAG TCTTCAATCGGGATACCTGATGTTTGCGTACGCGGGTGATCATATCGTTT CATGACGTCACATTTACGATACGGCAGCTGTGGCCCAGATCTCCTCATAT GGTACTGCATACTAACAAAGAATGGTCATTGCCACGGCTGGTGATTGATG CCTGATGCCTTACGGTGTCCTTGGTCACTCCTCTTACATAGAGCGTTTTT TTGTCGTGGGTCCATGGCACAAAAGCGCGAGAATGTTTTCTTTGGCACCG ATACGACCGACGTGTACAAGAGGGCTTTGATTGAGATTTTTATGTAGTAG TCAATATGGTGACCATGTTTTCGTCCGGTAGTCCGATAGCCTAGTCTGAC TTGCATAGGACCTGCTCGGCAGGGCATTGCTGCAATCCCTGAGGTTTAGC TCAACAAAGGTGATCCTTAGATGCTTGGAACCCTTCTCGTGCTTATCCTC TATTTTTCTTGTGTCGGTAGGGATGGTTCGACCGGACTTTGATACCAGGT GTGGCCTTCGACCTTCCTAACGGTTCTACAGGAAAACCAAATTTGAGGAC TGGATTTATTAGTCGTCTCACAAATATCAAGAAGGTGAGCGCACGGAGTT GAATTACGACGTGTCATACTTGAGTTCGGGGCGTGCTACCGTACGGGCAA CATCGTATTTGTATATTCACACCCATCCTGTACAACCATAAACTTCGTAC ACAACATGCGTATTGACTGTTTTGGAGACTAGAGCTCTGATCGCTGTGAC ATTACACTACTCCACAGTAGTGGGAGTTCCAACGTATTAGCCATATGCTC TTTGTGCCACTTCGTGTAGGATTACTATGTCCGTCGCTCCATCTCCAGTG GCGGTGCGGTTTGTCATAGTGAAAGCAGGCGGGCGATGGTATCGGACTTT CATGTTTGGAAAAACCAAGGGGAAATGATCACGGTCGTACTATCAACACT GCGTATTGACCCCACATCTCTGTGGAAGCCGGTTGTGGCCACAGAGTGCC AGAAGGCAGTATTTCGGCCCATGCAACGAGATCATGGAACGATATTTTAG CACGATTTCACGTGGAACACGAAAAGTTGCAAGCTAAACGCACCGTCGAT TACTGCTGCTGTCCCGAACACTTACATGTGGTTTATAGAGCAATGAGCAC TGTCATTCATCACCATGTCACACCCACTGATGTACCCCCCCGCTCGATCC CACCGCCCCCCACCTTGTCTGTGTGTACCCACCCGCAGGTTGGCATGGTG ACAACTTTCGGTAATGGATTTTGGAACGTGCGATATGTTGGTGATCCGGG AAGACGCATAGTCGCACGAGGACTTCGACCGAATTTTCACCCAAGATGCA CTGTGTTATGGAAAGGATTGTACGATGTAGAAAAATGCACCCCCAAAAAG AGGGAGAGCTTTTTGGAAGACGTGAAAGAATCCTTTAGAGGGTTCTAGAA AACTAGACAAGGTGCCCGTTCCATCTGCTTGGTAGCATAAAATATCACTC AAGTGACGTCATTGGTGGCCATGACGTCGTCTTTCGAAACAGGGTAATTT CGGCCATGGGATGACATGAATTCCGGGATGTTGTTTTTGAAGAAATACAG CTAAGAAAACTTTCAGAAGTTTTGAGTGGTTGCTGTTTTGTCCAAAACAG GAAAGGACGTTAGCGAAACAAATATCCACATAACTTCCCAAAGAAATTGT TCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2307:1577..4731-

>mRNA_H-paniculata_contig2307.6194.1 ID=mRNA_H-paniculata_contig2307.6194.1|Name=mRNA_H-paniculata_contig2307.6194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig2307:1577..4731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACTAGGATTGTCCAAGCGATGGCCTCCTATCTTGGACAATGTGGC
GAGAGCTTTGAATCGAGTAACGACGTTTGTTCCTCTTCCGCCAGCAACCA
ACTCTGCCCCCGAGAAAGTACTTGTGATACAGGTACATCCGTATGGGAAT
AAACCGTCGTTTACTCTGGCACTGGGTAAGGCTCTATGCGAATCGCTGGA
GGTTTCAGATGCGACTAGGATTGTCCAAGCGATGGCCTCCTATCTTGGAC
AATGTGGCGAGAGCTTTGAATCGAGTAACGACGTTTGTTCCTCTTCCGCC
AGCAACCAACTCTGCCCCCGAGAAAGTACTTGTGATACAGGTACATCCGT
ATGGGAATAAACCGTCGTTTACTCTGGCACTGGGTAAGGCTCTATGCGAA
TCGCTGGAGGTTTCAGGCCACCAAGTTCGGGTAACGAATCTTTACGAAGA
AAACTTCGAGCCAAGGCTGGGAGGACCGGAGCATCAGACGTTCCTCACGG
CGTATCGAGATGGTCATGTTCCGGAGGATATTAAGACACATATCGAGGAC
TTGCAGTGGTGTTCTGGGCTATGTCTGGTCTACCCCACCTGGTGGTACTC
GTTTCCTGCGATTTTGAAGGCCACCAAGTTCGGGTAACGAATCTTTACGA
AGAAAACTTCGAGCCAAGGCTGGGAGGACCGGAGCATCAGACGTTCCTCA
CGGCGTATCGAGATGGTCATGTTCCGGAGGATATTAAGACACATATCGAG
GACTTGCAGTGGTGTTCTGGGCTATGTCTGGTCTACCCCACCTGGTGGTA
CTCGTTTCCTGCGATTTTGAAGGGATGGTTCGACCGGACTTTGATACCAG
GTGTGGCCTTCGACCTTCCTAACGGTTCTACAGGAAAACCAAATTTGAGG
ACTGGATTTATTAGTCGTCTCACAAATATCAAGAAGGGATGGTTCGACCG
GACTTTGATACCAGGTGTGGCCTTCGACCTTCCTAACGGTTCTACAGGAA
AACCAAATTTGAGGACTGGATTTATTAGTCGTCTCACAAATATCAAGAAG
GTTGGCATGGTGACAACTTTCGGTAATGGATTTTGGAACGTGCGATATGT
TGGTGATCCGGGAAGACGCATAGTCGCACGAGGACTTCGACCGAATTTTC
ACCCAAGATGCACTGTGTTATGGAAAGGATTGTACGATGTAGAAAAATGC
ACCCCCAAAAAGAGGGAGAGCTTTTTGGAAGACGTGAAAGAATCCTTTAG
AGGGTTCTAGGTTGGCATGGTGACAACTTTCGGTAATGGATTTTGGAACG
TGCGATATGTTGGTGATCCGGGAAGACGCATAGTCGCACGAGGACTTCGA
CCGAATTTTCACCCAAGATGCACTGTGTTATGGAAAGGATTGTACGATGT
AGAAAAATGCACCCCCAAAAAGAGGGAGAGCTTTTTGGAAGACGTGAAAG
AATCCTTTAGAGGGTTCTAG
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