mRNA_H-paniculata_contig2307.6194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: D7FXF8_ECTSI (NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF8_ECTSI) HSP 1 Score: 361 bits (927), Expect = 2.900e-122 Identity = 170/243 (69.96%), Postives = 200/243 (82.30%), Query Frame = 3
Query: 108 LSKRWP--PILDNVARALNRVTTFVPLPPA-TNSAPEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
+S+R P +L RALNRVT+FVP PP+ + EK++V+QVHP G PSFTLALG+A+ +SL+ +GHQVRVTNLY+E F+ LGG EH+ F+TA+RDG V ED+K H++DLQWCSGL L YPTWWYSFPAILKGW DRTL+PGVAFDLPNG KP+ +TGFISRLTNI+KVGMVTTFGN FWNVRYVGDPGRRIV+RGLRP FHP CT+LWKGLYDVEKC P+ R +FLEDV SFR F
Sbjct: 8 VSRRQPLSSLLAGAMRALNRVTSFVPPPPSGKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGQVAEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNG-VEKPHPKTGFISRLTNIRKVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 249
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A835ZJZ3_9STRA (NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJZ3_9STRA) HSP 1 Score: 236 bits (602), Expect = 4.800e-73 Identity = 112/228 (49.12%), Postives = 155/228 (67.98%), Query Frame = 3
Query: 150 ALNRVTTFVPLPPATNS--APEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
ALN+ + PPA N+ ++VL++ HP S++ AL A+ +L+ GH VRV +LY E FE L E +T++TAYR+G + + H+E L+W GL VYPTWWY+ PAILKGWFDR L PG FD+P+G+T N TG ISRLTNIK++G+V+T+GN + +V+YVGDPGRR+++RGLR HP C+VLW GL+ VE C ++R +FLE V++ F F
Sbjct: 27 ALNKCSCH--FPPARNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTT-PTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF 251
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: W7TIP7_9STRA (Nad h dehydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIP7_9STRA) HSP 1 Score: 208 bits (529), Expect = 4.620e-62 Identity = 106/242 (43.80%), Postives = 146/242 (60.33%), Query Frame = 3
Query: 120 WPPILDNVARALNRVTTFVPLPPATNS-APEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGH---VPED--IKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
W P+ +A A NR T+F+P PP S P +VL++ HP G SF A + SL+ +GH+V+ +LYEE F+P + + + ++ D H P+ + +I+ L+WC L VYPTWWY+ PAILKGW DRT +P AF LP T P G + L NIKKVG+VTT+G+ + +RYVGDPGRRI+ARGLRP F +CT+LW G+Y + + +RE FL +V R F
Sbjct: 13 WDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTS-SFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPT-PTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A6N6VDW8_9HYPH (Flavodoxin family protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VDW8_9HYPH) HSP 1 Score: 176 bits (447), Expect = 1.480e-50 Identity = 87/202 (43.07%), Postives = 124/202 (61.39%), Query Frame = 3
Query: 210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRD-GHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKE 812
KVLV+ HP SF AL + ++L+ GH VR+T+LY ENF+PRLG E + + T ++ +VPE HI ++QW L V+PTWWY PA+LKGW DR +PGV+F +P G + LTN+K VG +TT G+ +W ++ VG+P RR + RG+R + HPRC LW Y ++ TP+ R+S+L V+E
Sbjct: 2 KVLVVYSHPVPE--SFCAALRDTVVDALKAKGHDVRLTDLYAENFDPRLGCQERRDYHTEGKNLTYVPE----HIANIQWAEALIFVFPTWWYGLPAMLKGWLDRVFVPGVSFTMPKGQMP-------IMPALTNVKLVGGITTCGSPWWWMKIVGEPHRRTLLRGIRGSCHPRCKTLWMAHYRMDSSTPESRKSYLALVRE 190
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A7S0J3Q7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J3Q7_9EUKA) HSP 1 Score: 171 bits (434), Expect = 4.850e-48 Identity = 89/237 (37.55%), Postives = 135/237 (56.96%), Query Frame = 3
Query: 120 WPPILDNVARALNRVTTFVPLPPATN-SAPEKVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLT-AYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGV--AFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESF 818
W + A LNR+T+ VP PPA S P ++L+I HP + SF++AL A+ GH++R +LY ENF+P L E + A + D+++ ++DL+W L VYPTWW++ PA+LKG+FDR L+PG A+D P ++G+ G LTN+K+V V+T+G GD GR ++ +RP F P+CT LW GLY ++ C+ ++R F V+E+
Sbjct: 3 WNSMTRWAAIKLNRLTSHVPPPPAEEGSGPRRILLIHAHPRAD--SFSMALADAVQAGAVDGGHELRRRSLYAENFQPALTSSERGVYFDGAGGAARLASDVRSQLDDLRWADSLVFVYPTWWFNLPAMLKGYFDRVLVPGPEGAWDFP--ASGRSLAANGLAPNLTNVKRVCAVSTYGAPRHIAFLAGDNGRNTISTAIRPLFDPQCTCLWLGLYSMDACSREERTQFAAHVRETI 235
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A7S0LIU4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIU4_9EUKA) HSP 1 Score: 169 bits (429), Expect = 3.200e-47 Identity = 90/241 (37.34%), Postives = 136/241 (56.43%), Query Frame = 3
Query: 111 SKRWPPILDNVARALNRVTTFVPLPPATNSAPEK-VLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEH-QTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGV--AFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFR 821
S W + A LN++T+ VP PP ++ +L+I HP + S++ AL A+ E GH++R LY E F+ + E + F A + + D+++H+ DL+W + VYPTWW++ PA+LKG+FDRTL+PG A+D P GS G+P G + LTNIK++ V+T+G GD GR ++ +RP F P+CT LW GLY ++ CT + R F V+E+ R
Sbjct: 6 SMFWNALTRWTACKLNKLTSHVPPPPREEGKCKRHILLIHAHPRAD--SYSTALADAVHEGAVAGGHELRRRTLYAEGFQSAMTDSERGKYFDVASGESRIQGDVRSHLADLRWADSIVFVYPTWWFNMPAMLKGYFDRTLVPGPGGAWDFP-GSGGEP-ASNGLVPYLTNIKRIAAVSTYGAPRHITFLAGDNGRNTISTAIRPIFDPQCTCLWLGLYSMDDCTKEDRSRFAVRVRETIR 242
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A4D9CVE7_9STRA (Flavodoxin_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE7_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.330e-45 Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 3
Query: 417 IKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
+ +I+ L+WC L VYPTWWY+ PAILKGW DRT +P AF LP ++ P++ G + L NIKKVG+VTT+G+ + +RYVGDPGRRI+ARGLRP F +CT+LW G+Y + + KRE FL +VK R F
Sbjct: 18 LLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPPSV-VGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAKREEFLAEVKAYMREF 153
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A8J7IJF2_9RHOB (NAD(P)H-dependent oxidoreductase n=1 Tax=Arenibacterium arenosum TaxID=2798803 RepID=A0A8J7IJF2_9RHOB) HSP 1 Score: 158 bits (400), Expect = 1.580e-43 Identity = 78/205 (38.05%), Postives = 122/205 (59.51%), Query Frame = 3
Query: 210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRG 824
+ LVI HP + S+ AL C +LE +GH +RV +LY E+F+P L P+ + TA ++ + D++ H+E ++W L LVYPTW Y PAILKGW +R +PGVAF++P+G + +L NI++ ++TT G+ +W +R + DPGR ++ RG R F +C V W L+D+ T R +FL+ V+++ G
Sbjct: 2 RTLVIFAHP--STESYGAALLDTACRALEAAGHDLRVIDLYREDFDPVLREPDWTLYKTAPQE--LIPDVRAHVEAMEWADSLVLVYPTWMYGPPAILKGWLERVWLPGVAFEVPSGMKKRAQ------GKLDNIRRFTVITTSGSPWWWLRLIRDPGRSMMLRGFRVLFSRQCRVKWLQLHDMNHRTDHDRRAFLDRVQQTLAG 196
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A7X4DQ99_9RHOB (NAD(P)H-dependent oxidoreductase n=1 Tax=Boseongicola sp. SB0675_bin_26 TaxID=2604849 RepID=A0A7X4DQ99_9RHOB) HSP 1 Score: 158 bits (399), Expect = 2.360e-43 Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 3
Query: 210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVPEDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFR 821
++LV+ HP ++ SF AL + C +L +GH+VRV +LY E FEP L E +L R + + H++DLQW GL ++YPTW+Y PA+LKGW +R +PGVAF++ + +P +L N++ +TT G+ +W +R + DPGR + RGLRP F P C V W L+D+ T R FL V+ + +
Sbjct: 2 RLLVVFCHP--SRESFGAALFETACRTLRAAGHEVRVHDLYREGFEPVLSEQEWSDYLPRTRT--IIDKHPDHVDDLQWAEGLVVIYPTWFYGPPAMLKGWLERVWLPGVAFEVADARLKRPK------GKLGNVRLFVGITTSGSPWWWLRLIRDPGRSLWTRGLRPLFSPNCRVTWLQLHDMNNSTENDRTGFLARVERTLQ 195
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Match: A0A225NEN9_9RHOB (NAD(P)H dehydrogenase n=1 Tax=Marinibacterium profundimaris TaxID=1679460 RepID=A0A225NEN9_9RHOB) HSP 1 Score: 158 bits (399), Expect = 3.090e-43 Identity = 87/207 (42.03%), Postives = 115/207 (55.56%), Query Frame = 3
Query: 210 KVLVIQVHPYGNKPSFTLALGKALCESLEVSGHQVRVTNLYEENFEPRLGGPEHQTFLTAYRDGHVP-EDIKTHIEDLQWCSGLCLVYPTWWYSFPAILKGWFDRTLIPGVAFDLPNGSTGKPNLRTGFISRLTNIKKVGMVTTFGNGFWNVRYVGDPGRRIVARGLRPNFHPRCTVLWKGLYDVEKCTPKKRESFLEDVKESFRGF 827
+ LV+ HP K SFT A+ + + E L G +VR+ +LY F P L EH+ Y D + + I+ IEDL WC L VYPTWWY PAILKGW DR L+PGVAF +P S G P++R G L+NI ++G+ TT G +W R+VG PG+R + RGLR PRC + Y ++ TP+ R L V F
Sbjct: 2 RALVVYCHP--RKASFTEAVREVVLEKLAAVGAEVRLVDLYAGPFAPVLTAQEHEW----YEDESLNRQGIEQEIEDLTWCDTLIFVYPTWWYGLPAILKGWLDRALVPGVAFLMP--SEGHPDIRPG----LSNITRLGVFTTCGASWWLTRFVGAPGKRTLLRGLRLICAPRCKTTFAAHYLMDSSTPESRAKHLAKVARKMERF 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2307.6194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2307.6194.1 >prot_H-paniculata_contig2307.6194.1 ID=prot_H-paniculata_contig2307.6194.1|Name=mRNA_H-paniculata_contig2307.6194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp MRLGLSKRWPPILDNVARALNRVTTFVPLPPATNSAPEKVLVIQVHPYGNback to top mRNA from alignment at H-paniculata_contig2307:1577..4731- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2307.6194.1 ID=mRNA_H-paniculata_contig2307.6194.1|Name=mRNA_H-paniculata_contig2307.6194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3155bp|location=Sequence derived from alignment at H-paniculata_contig2307:1577..4731- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2307:1577..4731- >mRNA_H-paniculata_contig2307.6194.1 ID=mRNA_H-paniculata_contig2307.6194.1|Name=mRNA_H-paniculata_contig2307.6194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig2307:1577..4731- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |