mRNA_H-paniculata_contig2307.6197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2307.6197.1
Unique NamemRNA_H-paniculata_contig2307.6197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2307.6197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2307contigH-paniculata_contig2307:12943..13549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size607
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2307.6197.1prot_H-paniculata_contig2307.6197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2307 13133..13471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.816034-UTR-H-paniculata_contig2307:12942..131321622929648.816034-UTR-H-paniculata_contig2307:12942..13132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 12943..13132 +
1691480950.734152-UTR-H-paniculata_contig2307:12942..131321691480950.734152-UTR-H-paniculata_contig2307:12942..13132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 12943..13132 +
1622929648.8530285-UTR-H-paniculata_contig2307:13471..135491622929648.8530285-UTR-H-paniculata_contig2307:13471..13549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 13472..13549 +
1691480950.7594562-UTR-H-paniculata_contig2307:13471..135491691480950.7594562-UTR-H-paniculata_contig2307:13471..13549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2307 13472..13549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.8337195-CDS-H-paniculata_contig2307:13132..134711622929648.8337195-CDS-H-paniculata_contig2307:13132..13471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 13133..13471 +
1691480950.7492242-CDS-H-paniculata_contig2307:13132..134711691480950.7492242-CDS-H-paniculata_contig2307:13132..13471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2307 13133..13471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2307.6197.1

>prot_H-paniculata_contig2307.6197.1 ID=prot_H-paniculata_contig2307.6197.1|Name=mRNA_H-paniculata_contig2307.6197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MGYGRLFPTCSGHMVAAQFFTNIWCQHDLLRYCLDEEHHHRNAPLNFFSG
HPSPCNPILHVTFLAKRYFPSWSISTLQTTWILEHGQRQLRPHICRARHN
NVHGHAPKLLGT*
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mRNA from alignment at H-paniculata_contig2307:12943..13549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2307.6197.1 ID=mRNA_H-paniculata_contig2307.6197.1|Name=mRNA_H-paniculata_contig2307.6197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=607bp|location=Sequence derived from alignment at H-paniculata_contig2307:12943..13549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGCTAATATGTAGATTATTCTTAAAATCAGGGTAAAATGCTCTAGCTC
TAAAGGCCGTTCGGCCTCGATTTCTTCCAATCGTACCACACCATGTCAGG
TACGTTTAAAGTCTCCATCTCGACATCAGTGGGCTTACGCACCGCGTCCA
TCACGGCAGTTACACGGGCTTAGAGCAATATCCCATCAAAATGGGGTATG
GTAGACTTTTCCCAACATGCAGTGGGCACATGGTTGCGGCTCAGTTTTTC
ACGAATATCTGGTGTCAGCATGACCTTCTCAGATACTGTCTAGATGAAGA
ACATCATCACCGCAACGCGCCACTGAATTTCTTCTCCGGACACCCATCCC
CATGCAACCCTATTCTCCACGTAACATTTCTAGCCAAGCGCTATTTCCCA
TCATGGTCCATCTCTACATTACAAACGACGTGGATTTTGGAACATGGACA
ACGACAATTGCGTCCACATATTTGCCGAGCAAGGCACAACAACGTACATG
GTCATGCACCCAAACTATTAGGGACATGAAAATGGATCCACACCTTGATG
ACACCACCCTCGATCATCTCGTGGTAGAGGTCGTTACCCTCGCGGGTGCG
CTCCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2307:12943..13549+

>mRNA_H-paniculata_contig2307.6197.1 ID=mRNA_H-paniculata_contig2307.6197.1|Name=mRNA_H-paniculata_contig2307.6197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig2307:12943..13549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTATGGTAGACTTTTCCCAACATGCAGTGGGCACATGGTTGCGGC
TCAGTTTTTCACGAATATCTGGTGTCAGCATGACCTTCTCAGATACTGTC
TAGATGAAGAACATCATCACCGCAACGCGCCACTGAATTTCTTCTCCGGA
CACCCATCCCCATGCAACCCTATTCTCCACGTAACATTTCTAGCCAAGCG
CTATTTCCCATCATGGTCCATCTCTACATTACAAACGACGTGGATTTTGG
AACATGGACAACGACAATTGCGTCCACATATTTGCCGAGCAAGGCACAAC
AACGTACATGGTCATGCACCCAAACTATTAGGGACATGAATGGGGTATGG
TAGACTTTTCCCAACATGCAGTGGGCACATGGTTGCGGCTCAGTTTTTCA
CGAATATCTGGTGTCAGCATGACCTTCTCAGATACTGTCTAGATGAAGAA
CATCATCACCGCAACGCGCCACTGAATTTCTTCTCCGGACACCCATCCCC
ATGCAACCCTATTCTCCACGTAACATTTCTAGCCAAGCGCTATTTCCCAT
CATGGTCCATCTCTACATTACAAACGACGTGGATTTTGGAACATGGACAA
CGACAATTGCGTCCACATATTTGCCGAGCAAGGCACAACAACGTACATGG
TCATGCACCCAAACTATTAGGGACATGA
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