mRNA_H-paniculata_contig23056.6191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23056.6191.1
Unique NamemRNA_H-paniculata_contig23056.6191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23056.6191.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.720e-24
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 3 
Query:   30 NSSALVNSCRIENIVIHDAVPLAAGTAAMTDGSLSTKCAVKLAVDTLAGDKTILNPSTSTDARLNKLFQSVKDSLHPRGTIAIMVPHPWHLHAGRIRSALTHASVGLHVEDHPLLLQYKGMRAGRTSQNAVNHLRYNADMVM 455
            N + L++ CR EN  +HD VPL   T +  D  LS + A KL + ++  ++ +L  S +T+  L ++  +V+  +HP GTIA++VPHPW  H  R++ A+  A VGL VEDHPL+L Y     GR    A NHL+ + DMV+
Sbjct:  316 NEAVLMDKCRDENTTLHDIVPLDP-TGSDVD-KLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAENHLKNHLDMVL 455
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BLAST of mRNA_H-paniculata_contig23056.6191.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.790e-11
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 3 
Query:   30 NSSALVNSCRIENIVIHDAVPLAAGTAAMTDGSLSTKCAVKLAVDTLAGDKTILNPSTSTDARLNKLFQSVKDSLHPRGTIAIMVPHPWHLHAGRIRSALTHAS 341
            N + L++ CR EN  +HD VPL   T +  D  LS + A KL + ++  ++ +L  S +T+  L ++  +V+  +HP GTIA++VPHPW  H  R++   T  S
Sbjct:  374 NEAVLMDKCRDENATLHDTVPLDP-TGSDVD-KLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRLQGDSTFLS 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23056.6191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE6.720e-2440.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC60_9PHAE4.790e-1136.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23056contigH-paniculata_contig23056:1747..2863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size455
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23056.6191.1prot_H-paniculata_contig23056.6191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23056 1747..2431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.4579933-CDS-H-paniculata_contig23056:1746..18801622929648.4579933-CDS-H-paniculata_contig23056:1746..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23056 1747..1880 -
1691480950.582421-CDS-H-paniculata_contig23056:1746..18801691480950.582421-CDS-H-paniculata_contig23056:1746..1880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23056 1747..1880 -
1622929648.4717653-CDS-H-paniculata_contig23056:2223..24311622929648.4717653-CDS-H-paniculata_contig23056:2223..2431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23056 2224..2431 -
1691480950.5950587-CDS-H-paniculata_contig23056:2223..24311691480950.5950587-CDS-H-paniculata_contig23056:2223..2431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23056 2224..2431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.4836943-UTR-H-paniculata_contig23056:2431..24861622929648.4836943-UTR-H-paniculata_contig23056:2431..2486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23056 2432..2486 -
1691480950.6086006-UTR-H-paniculata_contig23056:2431..24861691480950.6086006-UTR-H-paniculata_contig23056:2431..2486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23056 2432..2486 -
1622929648.5006504-UTR-H-paniculata_contig23056:2805..28631622929648.5006504-UTR-H-paniculata_contig23056:2805..2863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23056 2806..2863 -
1691480950.6238747-UTR-H-paniculata_contig23056:2805..28631691480950.6238747-UTR-H-paniculata_contig23056:2805..2863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23056 2806..2863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23056.6191.1

>prot_H-paniculata_contig23056.6191.1 ID=prot_H-paniculata_contig23056.6191.1|Name=mRNA_H-paniculata_contig23056.6191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MTDGSLSTKCAVKLAVDTLAGDKTILNPSTSTDARLNKLFQSVKDSLHPR
GTIAIMVPHPWHLHAGRIRSALTHASVGLHVEDHPLLLQYKGMRAGRTSQ
NAVNHLRYNADMVM
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mRNA from alignment at H-paniculata_contig23056:1747..2863-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23056.6191.1 ID=mRNA_H-paniculata_contig23056.6191.1|Name=mRNA_H-paniculata_contig23056.6191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1117bp|location=Sequence derived from alignment at H-paniculata_contig23056:1747..2863- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGTCGTCTTGCTTTCGCTGATGCAGCAACTCTTCTGCGTTGGTGAAC
TCTTGCAGGTACAGTTTGGGGACGAATTAATGTCGTTGTGTTGCTTTCTA
TGGATGGTAGACGTTGTTGTCATCCTCAGGTAGGTAGTCAGTCTGCTTCT
GTTGCTTGCATGTTTTCCTCATATCAACTTGCATTACACCTGGCGTCAAA
GTACAGGAGCTCCGTTACATGTAGACTACATGAGACTGCTTCATGTCTTC
TACATGAATCACTGCATATTTAATCACAACAGTGTGTCCTCCATGGATTT
CGCTTCACGAGAATGATGATTGGCGTGCACGATCCCTAAACATCTACTAC
GTACCCCTATTCGTTGCCGCCACGAAGGATCGAGAACATTGTTATCCATG
ATGCGGTGCCTCTTGCAGCTGGGACGGCGGCCATGACAGATGGGAGTCTG
TCCACCAAGTGTGCGGTCAAATTGGCGGTTGACACCCTTGCAGGAGACAA
GACCATCCTCAACCCTTCCACATCAACCGACGCCCGACTGAACAAGCTAT
TCCAATCCGTGAAAGACAGCCTGCACCCCCGTGGGACTATTGCAATCATG
GTACCTCACCCTTGGCATCTGCACGCTGGACGCATCCGCAGTGAGTATTT
TGTATTTGCTGTTTGTGCAACTTTATAAAAAATACGCCATTGCTGTAACA
TGGAAGCCCATCGACCGCTCCAGCCCACTATACCCAATGGTTTATGGGAG
AAGAAAGTAGCGTGTACACGGCATAATAGAGTGTGCAACATTATTGCATC
AAGGTGTAATGTGAACGTGCGATTGGGGTATCACTGGACGTCCATTCTAC
GTTTTTTCACATGTTGCACGATAAACTCCGCCTATTGAGGCATATGAACG
ACCACGGAGGTATTGGAGCACACACATATCGGGTGTATTCCAAACATCAA
CGCATTCCGTTGACGTTCTTACTGTGTTTGCAGGTGCTCTGACCCATGCA
TCGGTAGGATTGCACGTTGAGGATCACCCACTCCTCCTCCAGTACAAGGG
TATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACA
ATGCAGACATGGTGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig23056:1747..2863-

>mRNA_H-paniculata_contig23056.6191.1 ID=mRNA_H-paniculata_contig23056.6191.1|Name=mRNA_H-paniculata_contig23056.6191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig23056:1747..2863- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGTCAAATTGGCGGTTGA
CACCCTTGCAGGAGACAAGACCATCCTCAACCCTTCCACATCAACCGACG
CCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAGCCTGCACCCCCGT
GGGACTATTGCAATCATGGTACCTCACCCTTGGCATCTGCACGCTGGACG
CATCCGCAATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGTCAAATTG
GCGGTTGACACCCTTGCAGGAGACAAGACCATCCTCAACCCTTCCACATC
AACCGACGCCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAGCCTGC
ACCCCCGTGGGACTATTGCAATCATGGTACCTCACCCTTGGCATCTGCAC
GCTGGACGCATCCGCAGTGCTCTGACCCATGCATCGGTAGGATTGCACGT
TGAGGATCACCCACTCCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCA
CATCGCAGAATGCTGTCAATCATCTACGTTACAATGCAGACATGGTGATG
GTGCTCTGACCCATGCATCGGTAGGATTGCACGTTGAGGATCACCCACTC
CTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACATCGCAGAATGCTGT
CAATCATCTACGTTACAATGCAGACATGGTGATG
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