mRNA_H-paniculata_contig23048.6186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23048.6186.1
Unique NamemRNA_H-paniculata_contig23048.6186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23048.6186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23048contigH-paniculata_contig23048:2752..3209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23048.6186.1prot_H-paniculata_contig23048.6186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23048 2752..3086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.8976357-CDS-H-paniculata_contig23048:2751..29051622929647.8976357-CDS-H-paniculata_contig23048:2751..2905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23048 2752..2905 +
1691480950.3123376-CDS-H-paniculata_contig23048:2751..29051691480950.3123376-CDS-H-paniculata_contig23048:2751..2905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23048 2752..2905 +
1622929647.9153457-CDS-H-paniculata_contig23048:3018..30861622929647.9153457-CDS-H-paniculata_contig23048:3018..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23048 3019..3086 +
1691480950.3213968-CDS-H-paniculata_contig23048:3018..30861691480950.3213968-CDS-H-paniculata_contig23048:3018..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23048 3019..3086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.930307-UTR-H-paniculata_contig23048:3086..32091622929647.930307-UTR-H-paniculata_contig23048:3086..3209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23048 3087..3209 +
1691480950.3294635-UTR-H-paniculata_contig23048:3086..32091691480950.3294635-UTR-H-paniculata_contig23048:3086..3209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23048 3087..3209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23048.6186.1

>prot_H-paniculata_contig23048.6186.1 ID=prot_H-paniculata_contig23048.6186.1|Name=mRNA_H-paniculata_contig23048.6186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig23048:2752..3209+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23048.6186.1 ID=mRNA_H-paniculata_contig23048.6186.1|Name=mRNA_H-paniculata_contig23048.6186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig23048:2752..3209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23048:2752..3209+

>mRNA_H-paniculata_contig23048.6186.1 ID=mRNA_H-paniculata_contig23048.6186.1|Name=mRNA_H-paniculata_contig23048.6186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig23048:2752..3209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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