mRNA_H-paniculata_contig2304.6184.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2304.6184.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE) HSP 1 Score: 442 bits (1137), Expect = 4.760e-130 Identity = 526/1223 (43.01%), Postives = 611/1223 (49.96%), Query Frame = 1
Query: 184 SVGVSQG-VGVSSPMVLPSGGVHPGGNGVG------GQQTQQLEAARKEEMAKAQRSQRAEELRNIYQEDIHYFVQHGSSLLKKLHKTRPASQSSEQVQKLIQYVKEGHNALLYINRCHDTGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKSQSN------MYLQSPVAHQNQPGTRQFSGPDQHVFSTSGTSIGGQATTSLGGSMNPAAMTPGSSGGVGTPSSSSLEVPTAS------TLTDLEPIPLPDT---YPISQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILLRRQHAXXXXXXXRLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPHHPLLQQELQXXXXXXXXXXXXXXXXXXXXXXXLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAASTPLGPASSQLTLTHRPSSDMFWNPGDMVDLEPTPLEDTPLEESLTTGLDAGGGDFDMPVDDFFDLXXXXXXXXXXEGEDWLSTQSLPDEGSATPGATVKLDPTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVTAPIPTSVGPPTVAVVXXXXXXMQSALAQQQLSQAQPQQLPLLQQQQGLPEIENILQQQSVGLDVKLVNGNGLPDAAGPPVMLSPPQPQTVVDKLAAMVAEGGPAATNLGRLANGVSSSLGFRAPGSVTRA-DSPRPYLAGGV-DADLRAVESGLGFTDVLGVEDTSAG---------VTPAGLRNVGQTLGRQANNAFEAMAAAADTSQGDPAALSDVISHQLGPLPRLLNGFASGCAALTPPVSHASVGNGAASSAGSLTSLPSAGGDNNSNAPSNSAL--KRPKSECSDDNERLGKVPRMESGGIGGGSGPATSAFAGGGDPADNGXXXAGAGSMSRPENGXXXXXXXXXXXXXXXXXX--------ARPTTADFRHGGGEEMMALLKAKVGRIFSLEAEYTHVR----SNNGPVPAALGVNGTETLAVAAAGSGGEQDGGGDVGTAVSTGGDKSGSAAGD---NVGTNGLRRVLARLKAVRAGQFVAYIQFDVAG-NEFRPCDVSVLSWGEAGEGSSAXXXXXXXXXXXXXXQGSASDGSSSPRE------FMNALDGTKPWRTSQHTALIHVSGHAYQ 3681
S+G S G VGVS+ MV+ +G H GG GVG G T Q EAA KEE AK RS+RAEELR IYQEDIHYFVQHGSSLLKKLHKTRPASQ+SEQV KL+QYVKEGHNALLYINRCH+TGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSK+Q Q +RQ+S DQ+ FS GQ+ ++LG G++GGV TP S T S L+ IPLPDT Y QQXXXXXX RRQ A X XXXXXXXXXXXXXXXXXXXXX L QQ+L X XXXXXXXXXXXXXXXXXXX XX XXXXXXXXXXXXXXX A+AS+ P + L S+DMFW D+ DLEPTPL PLE+ + GGDFDMPV+DF DL +G+DWLSTQ LP+ PG + + G + P + PP A+ + + QQ QQQQGLP+++ L SVG L NG P + P PQTVVD+LAA+VA GG AA+NLGRLA VS+ LGFRAPGS A DS R YL G D DL A E+ LG +G ++G +T +GLR+ GQTL RQAN+AFEAMA AAD ++G+PA L +VI+HQLGP+PRLLNG SGC + P S A+V + S GS + AL KR K EC D ++ G+ + + G XXX XXXXXXXXXXXXXXXXXX ARP +ADFRHGGGEE+MALL+AKVGR+FSL AEYTHVR S NG A G G + ++DG AGD +VG GLRRVL+R+KAVRAG FV +I FDVAG NE RPCDVSVLSW EA EG SA S G + R FM+ + G+KPWR SQHTA + VSGHA+Q
Sbjct: 269 SIGSSTGMVGVSAGMVMSTG--HTGGGGVGAVGGGSGTSTGQHEAALKEERAKQHRSRRAEELRTIYQEDIHYFVQHGSSLLKKLHKTRPASQNSEQVLKLVQYVKEGHNALLYINRCHETGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKTQYGGCGXXXXXXXXXXXXXXQQPSRQYSA-DQNAFSP------GQSNSTLG-------PLGGTAGGVVTPVCSVGPTLTGSIDGGDSAALSLDAIPLPDTGTGYRTPQQXXXXXXNFLRQTQQQVGTA-------------------------------RRQRAHQLQLQXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------LQQQQLXXQQNXXXXXXXXXXXXXXXXXXXXXXXMPFRQXXXXXXXXXXXXXXX------------------ASASSGALPDARLLLAQGESSNDMFWGSVDIGDLEPTPLSG-PLEDQVIPPNLEEGGDFDMPVEDFLDLDPFPLEGMPLDGDDWLSTQCLPEGSGNKPGGSPRAG---------------------------NNSMDSSAVGGCGGASTRPGAYVPPPGALGDSGAGGLAVSSGLQQ------------QQQQGLPQLQTQL---SVGGLTPLGNGASGVAPINPADPIPEPLPQTVVDRLAAVVAGGGTAASNLGRLAGSVSAQLGFRAPGSTAAAADSSRSYLGGAAQDPDLLAAEASLG----MGQSGRASGXXXXXXCGALTASGLRSAGQTLCRQANSAFEAMATAADVNKGNPALLHNVINHQLGPMPRLLNGLVSGCTVVVPAPSVAAVPPARSGSRGSGAAQDGTAXXXXXXXXXXXALSNKRTKDECGDGDD--GRPEKKIALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLARPASADFRHGGGEELMALLRAKVGRLFSLSAEYTHVRTGGMSGNGSSAALGGEVGKK-----------QEDGLTXXXXXXXXXXXXXXXTAGDVKPDVGGGGLRRVLSRVKAVRAGHFVVHINFDVAGSNECRPCDVSVLSWNEAQEGESA------------------SAGGADARVKVEGGGFMDTVHGSKPWRASQHTAFVRVSGHAFQ 1278
BLAST of mRNA_H-paniculata_contig2304.6184.1 vs. uniprot
Match: D7FX92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX92_ECTSI) HSP 1 Score: 164 bits (414), Expect = 2.410e-38 Identity = 109/220 (49.55%), Postives = 123/220 (55.91%), Query Frame = 1
Query: 3085 ARPTTADFRHGGGEEMMALLKAKVGRIFSLEAEYTHVRSNNGPV---PAALGVNGTETLAVAAAGSGGEQDGGGDVGTAVSTG--------------GDKSGSAAGD---NVGTNGLRRVLARLKAVRAGQFVAYIQFDVAG-NEFRPCDVSVLSWGEAGEGSSAXXXXXXXXXXXXXXQGSASDGSSSPREFMNALDGTKPWRTSQHTALIHVSGHAYQ 3681
ARP +ADFRHGGGEE+MA LKAKVGR+FSL AEYTHVR+ P PAALG GG+VG G AGD +VG GLRRVLAR+KAVRAG FV +I+FDVAG NE RPCDVSVLSW EA EG SA G S FM+ + G+KPWRTSQHTA + VSGHA+Q
Sbjct: 332 ARPASADFRHGGGEELMARLKAKVGRLFSLSAEYTHVRTGVVPENGSPAALG--------------------GGEVGKKQEAGLTNXXXXXXXXXXXXXXXXXXAGDVKSDVGGGGLRRVLARVKAVRAGHFVVHIKFDVAGSNECRPCDVSVLSWNEAQEGESASTGGADARVK-------VEGGGQSGGGFMDTVHGSKPWRTSQHTAFVRVSGHAFQ 524
BLAST of mRNA_H-paniculata_contig2304.6184.1 vs. uniprot
Match: A0A835Z449_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z449_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.870e-14 Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 322 AQRSQRAEELRNIYQEDIHYFVQHGSSLLKKLHKTRPASQSS------EQVQKLIQYVKEGHNALLYINRCHDTGHVPSAASLQSLEHTLIRVHKASNALQVMI 615
A R + AE+LR Y+ DI FVQ G S+L K H P S ++ +Q++KL QYV+EG NAL+Y+ RCH GHVPSA SLQSLE TL +VH AS L+ M+
Sbjct: 441 AARVECAEQLRRRYEADIRAFVQQGRSVLLK-HDGSPRSMAAHGSGGADQIRKLRQYVREGQNALVYMERCHSRGHVPSAVSLQSLEQTLAKVHCASRTLRQMM 543
BLAST of mRNA_H-paniculata_contig2304.6184.1 vs. uniprot
Match: A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.190e-6 Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 454 VQKLIQYVKEGHNALLYINRCHDTGHVPSAASLQSLEHTLIRVHKASNALQVM 612
V+KL+QY++EG NAL+Y+ RCH H+PS SL+SL TL +VHKAS AL+ M
Sbjct: 71 VRKLVQYIREGQNALMYMERCHLQHHIPSGPSLESLHLTLQKVHKASLALRSM 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2304.6184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2304.6184.1 >prot_H-paniculata_contig2304.6184.1 ID=prot_H-paniculata_contig2304.6184.1|Name=mRNA_H-paniculata_contig2304.6184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1227bp GSGGVYSGQPGGGGGGGAWPGGGGRGGGQGVNAAAQAAADAVASAMINSRback to top mRNA from alignment at H-paniculata_contig2304:10592..21422+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2304.6184.1 ID=mRNA_H-paniculata_contig2304.6184.1|Name=mRNA_H-paniculata_contig2304.6184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10831bp|location=Sequence derived from alignment at H-paniculata_contig2304:10592..21422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2304:10592..21422+ >mRNA_H-paniculata_contig2304.6184.1 ID=mRNA_H-paniculata_contig2304.6184.1|Name=mRNA_H-paniculata_contig2304.6184.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7362bp|location=Sequence derived from alignment at H-paniculata_contig2304:10592..21422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |