mRNA_H-paniculata_contig23034.6179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23034.6179.1
Unique NamemRNA_H-paniculata_contig23034.6179.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23034.6179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23034contigH-paniculata_contig23034:2737..3758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size953
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23034.6179.1prot_H-paniculata_contig23034.6179.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23034 2988..3548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.9902508-UTR-H-paniculata_contig23034:2736..29871622929646.9902508-UTR-H-paniculata_contig23034:2736..2987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23034 2737..2987 -
1691480949.9476788-UTR-H-paniculata_contig23034:2736..29871691480949.9476788-UTR-H-paniculata_contig23034:2736..2987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23034 2737..2987 -
1622929647.039527-UTR-H-paniculata_contig23034:3548..37581622929647.039527-UTR-H-paniculata_contig23034:3548..3758Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23034 3549..3758 -
1691480949.9801257-UTR-H-paniculata_contig23034:3548..37581691480949.9801257-UTR-H-paniculata_contig23034:3548..3758Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23034 3549..3758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.0089447-CDS-H-paniculata_contig23034:2987..34751622929647.0089447-CDS-H-paniculata_contig23034:2987..3475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23034 2988..3475 -
1691480949.9624295-CDS-H-paniculata_contig23034:2987..34751691480949.9624295-CDS-H-paniculata_contig23034:2987..3475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23034 2988..3475 -
1622929647.0228271-CDS-H-paniculata_contig23034:3544..35481622929647.0228271-CDS-H-paniculata_contig23034:3544..3548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23034 3545..3548 -
1691480949.972058-CDS-H-paniculata_contig23034:3544..35481691480949.972058-CDS-H-paniculata_contig23034:3544..3548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23034 3545..3548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23034.6179.1

>prot_H-paniculata_contig23034.6179.1 ID=prot_H-paniculata_contig23034.6179.1|Name=mRNA_H-paniculata_contig23034.6179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MATVGALSVDILLDSGAGVTALSEDSLRQLQQQWPRWELSRPYTGLVKAK
MADGRELDLTEQTVPLHIILASSWGDLRVTLPFMIVPPELGVVILGGLTL
RKRDATAKGGGGAATRRQPDGGEGARARKQGARLGARSKGRSKMWKLCCE
LRVVRIVRKLKTK*
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mRNA from alignment at H-paniculata_contig23034:2737..3758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23034.6179.1 ID=mRNA_H-paniculata_contig23034.6179.1|Name=mRNA_H-paniculata_contig23034.6179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1022bp|location=Sequence derived from alignment at H-paniculata_contig23034:2737..3758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTCATCAACGGTGGACTGGGGAGAACCGAGTCGGTCTTCGAAACTAT
GGTCTTGCAGCAGGCGGGACCAAGCATGCCGCCCCCATAACTGCAATCGG
CGCCTGTGATGACGCCGCCGGAGCTTACCGGCACCTACAGCTTAGATATG
ACCACTCGCTACGCATAGCTACCAGTAGCTGCGAGTGAAAGGGCTAAGGT
GGGAAGCAGGATGGGCGGAGGAGATAAAGTACACGTAGAACACCTGGATC
ATCATCTCCGAGGGCGTCTGGAGTTACCGGGAGCGACTGTCGGAGCACTG
AGCGTTGATATACTGCTCGACTCTGGGGCGGGTGTGACGGCTTTGTCGGA
AGACAGTCTCCGCCAGTTGCAGCAGCAGTGGCCGCGGTGGGAACTCTCGA
GGCCATATACCGGCCTGGTGAAGGCAAAAATGGCTGATGGACGCGAGTTG
GACTTGACCGAGCAGACGGTTCCGCTACATATCATCCTCGCCTCCAGTTG
GGGTGACCTACGGGTCACGCTGCCGTTCATGATAGTACCGCCGGAATTAG
GGGTGGTCATTCTCGGCGGACTGACGCTGCGGAAACGTGATGCAACAGCT
AAAGGCGGCGGTGGAGCGGCGACAAGGCGGCAACCTGATGGAGGAGAAGG
CGCAAGAGCGAGGAAACAAGGAGCAAGGCTTGGTGCGCGGTCGAAGGGTC
GAAGTAAAATGTGGAAACTCTGTTGTGAGCTGCGGGTGGTGCGAATAGTG
AGGAAGTTGAAGACGAAGTAACGATCATAATGGTGCGAGCAGGGCCAGAC
ATGTTCATGACAAGGGGCGAGGAGATACGAGAGGGCAGCGGCATTGGAGT
CGGCGATAGAAGAGGCGAGGATCGAGGGTTTGCCGCCGAACAGAGTCACG
GAATCAAGGAAAATGATGATGAGCTCCCACTTAAATGCGTTTCGGCGGGT
GTTGAGCGGGGATACACCGGTGGACGTGGAACCGCTGCGGGTGCATGTAC
CCGCGGACGCGCGAGGCGCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig23034:2737..3758-

>mRNA_H-paniculata_contig23034.6179.1 ID=mRNA_H-paniculata_contig23034.6179.1|Name=mRNA_H-paniculata_contig23034.6179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig23034:2737..3758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGCGACTGTCGGAGCACTGAGCGTTGATATACTGCTCGACTCTG
GGGCGGGTGTGACGGCTTTGTCGGAAGACAGTCTCCGCCAGTTGCAGCAG
CAGTGGCCGCGGTGGGAACTCTCGAGGCCATATACCGGCCTGGTGAAGGC
AAAAATGGCTGATGGACGCGAGTTGGACTTGACCGAGCAGACGGTTCCGC
TACATATCATCCTCGCCTCCAGTTGGGGTGACCTACGGGTCACGCTGCCG
TTCATGATAGTACCGCCGGAATTAGGGGTGGTCATTCTCGGCGGACTGAC
GCTGCGGAAACGTGATGCAACAGCTAAAGGCGGCGGTGGAGCGGCGACAA
GGCGGCAACCTGATGGAGGAGAAGGCGCAAGAGCGAGGAAACAAGGAGCA
AGGCTTGGTGCGCGGTCGAAGGGTCGAAGTAAAATGTGGAAACTCTGTTG
TGAGCTGCGGGTGGTGCGAATAGTGAGGAAGTTGAAGACGAAGTAACGAC
TGTCGGAGCACTGAGCGTTGATATACTGCTCGACTCTGGGGCGGGTGTGA
CGGCTTTGTCGGAAGACAGTCTCCGCCAGTTGCAGCAGCAGTGGCCGCGG
TGGGAACTCTCGAGGCCATATACCGGCCTGGTGAAGGCAAAAATGGCTGA
TGGACGCGAGTTGGACTTGACCGAGCAGACGGTTCCGCTACATATCATCC
TCGCCTCCAGTTGGGGTGACCTACGGGTCACGCTGCCGTTCATGATAGTA
CCGCCGGAATTAGGGGTGGTCATTCTCGGCGGACTGACGCTGCGGAAACG
TGATGCAACAGCTAAAGGCGGCGGTGGAGCGGCGACAAGGCGGCAACCTG
ATGGAGGAGAAGGCGCAAGAGCGAGGAAACAAGGAGCAAGGCTTGGTGCG
CGGTCGAAGGGTCGAAGTAAAATGTGGAAACTCTGTTGTGAGCTGCGGGT
GGTGCGAATAGTGAGGAAGTTGAAGACGAAGTAA
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