mRNA_H-paniculata_contig2303.6172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2303.6172.1
Unique NamemRNA_H-paniculata_contig2303.6172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2303.6172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2303contigH-paniculata_contig2303:8294..8709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size417
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.422532-CDS-H-paniculata_contig2303:8293..86201622929646.422532-CDS-H-paniculata_contig2303:8293..8620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2303 8294..8620 +
1691480949.752064-CDS-H-paniculata_contig2303:8293..86201691480949.752064-CDS-H-paniculata_contig2303:8293..8620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2303 8294..8620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.4441428-UTR-H-paniculata_contig2303:8620..87091622929646.4441428-UTR-H-paniculata_contig2303:8620..8709Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2303 8621..8709 +
1691480949.7614248-UTR-H-paniculata_contig2303:8620..87091691480949.7614248-UTR-H-paniculata_contig2303:8620..8709Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2303 8621..8709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2303.6172.1prot_H-paniculata_contig2303.6172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2303 8294..8620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2303.6172.1

>prot_H-paniculata_contig2303.6172.1 ID=prot_H-paniculata_contig2303.6172.1|Name=mRNA_H-paniculata_contig2303.6172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
LRWRSLATHPHLLIPPHLTRVPQTQRCSSCPLHSTKFPLRCRCSGLLPTT
APAPHSPRRVASPASHSESWFVGCFTLVIISLRYCLLRPLLRGLQLQLYF
LADVLHHV*
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mRNA from alignment at H-paniculata_contig2303:8294..8709+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2303.6172.1 ID=mRNA_H-paniculata_contig2303.6172.1|Name=mRNA_H-paniculata_contig2303.6172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=416bp|location=Sequence derived from alignment at H-paniculata_contig2303:8294..8709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGTTGGCGCTCGCTTGCTACCCACCCTCATCTGCTGATCCCACCCCA
CCTAACGCGGGTGCCCCAGACGCAGCGTTGTTCGTCATGTCCTCTCCACT
CGACGAAATTTCCTCTGCGATGCCGCTGCTCTGGTCTTCTCCCGACGACC
GCACCTGCGCCGCATTCCCCTCGTCGCGTGGCATCACCAGCGTCGCATTC
CGAGTCGTGGTTCGTTGGATGTTTTACCCTCGTTATCATTAGTCTTCGCT
ACTGCCTTCTTCGCCCGCTCCTTCGAGGTCTGCAGTTGCAGTTATACTTT
CTGGCAGATGTACTCCATCATGTCTAGATACTGCATGTCCGATGGAAGGG
TGTGTTTTCCTGCGTTTACCTGACCAGGGGGGGAGTGGAGCGACCCGGAA
TAATGCGCAAGTAGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2303:8294..8709+

>mRNA_H-paniculata_contig2303.6172.1 ID=mRNA_H-paniculata_contig2303.6172.1|Name=mRNA_H-paniculata_contig2303.6172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig2303:8294..8709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGTTGGCGCTCGCTTGCTACCCACCCTCATCTGCTGATCCCACCCCA
CCTAACGCGGGTGCCCCAGACGCAGCGTTGTTCGTCATGTCCTCTCCACT
CGACGAAATTTCCTCTGCGATGCCGCTGCTCTGGTCTTCTCCCGACGACC
GCACCTGCGCCGCATTCCCCTCGTCGCGTGGCATCACCAGCGTCGCATTC
CGAGTCGTGGTTCGTTGGATGTTTTACCCTCGTTATCATTAGTCTTCGCT
ACTGCCTTCTTCGCCCGCTCCTTCGAGGTCTGCAGTTGCAGTTATACTTT
CTGGCAGATGTACTCCATCATGTCTAGCTACGTTGGCGCTCGCTTGCTAC
CCACCCTCATCTGCTGATCCCACCCCACCTAACGCGGGTGCCCCAGACGC
AGCGTTGTTCGTCATGTCCTCTCCACTCGACGAAATTTCCTCTGCGATGC
CGCTGCTCTGGTCTTCTCCCGACGACCGCACCTGCGCCGCATTCCCCTCG
TCGCGTGGCATCACCAGCGTCGCATTCCGAGTCGTGGTTCGTTGGATGTT
TTACCCTCGTTATCATTAGTCTTCGCTACTGCCTTCTTCGCCCGCTCCTT
CGAGGTCTGCAGTTGCAGTTATACTTTCTGGCAGATGTACTCCATCATGT
CTAG
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