mRNA_H-paniculata_contig23028.6171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23028.6171.1
Unique NamemRNA_H-paniculata_contig23028.6171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23028.6171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23028contigH-paniculata_contig23028:2754..3211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23028.6171.1prot_H-paniculata_contig23028.6171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23028 2754..3088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.343598-CDS-H-paniculata_contig23028:2753..29071622929646.343598-CDS-H-paniculata_contig23028:2753..2907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23028 2754..2907 +
1691480949.717319-CDS-H-paniculata_contig23028:2753..29071691480949.717319-CDS-H-paniculata_contig23028:2753..2907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23028 2754..2907 +
1622929646.3629084-CDS-H-paniculata_contig23028:3020..30881622929646.3629084-CDS-H-paniculata_contig23028:3020..3088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23028 3021..3088 +
1691480949.7302077-CDS-H-paniculata_contig23028:3020..30881691480949.7302077-CDS-H-paniculata_contig23028:3020..3088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23028 3021..3088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.3777666-UTR-H-paniculata_contig23028:3088..32111622929646.3777666-UTR-H-paniculata_contig23028:3088..3211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23028 3089..3211 +
1691480949.7377787-UTR-H-paniculata_contig23028:3088..32111691480949.7377787-UTR-H-paniculata_contig23028:3088..3211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23028 3089..3211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23028.6171.1

>prot_H-paniculata_contig23028.6171.1 ID=prot_H-paniculata_contig23028.6171.1|Name=mRNA_H-paniculata_contig23028.6171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
back to top

mRNA from alignment at H-paniculata_contig23028:2754..3211+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23028.6171.1 ID=mRNA_H-paniculata_contig23028.6171.1|Name=mRNA_H-paniculata_contig23028.6171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig23028:2754..3211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23028:2754..3211+

>mRNA_H-paniculata_contig23028.6171.1 ID=mRNA_H-paniculata_contig23028.6171.1|Name=mRNA_H-paniculata_contig23028.6171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig23028:2754..3211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
back to top