mRNA_H-paniculata_contig2302.6170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2302.6170.1
Unique NamemRNA_H-paniculata_contig2302.6170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2302.6170.1 vs. uniprot
Match: D7FMX7_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.220e-8
Identity = 46/128 (35.94%), Postives = 64/128 (50.00%), Query Frame = 1 
Query:    1 MGLPRALGERIWATTFHAFAATVVKHNGDLIWSEPDKGKDRPTKNGHGTGAARFPI--IGNEEQLSLVFQALKRVE----DAAGSKVKKSFSGSNSNAVRGVDATAPGGTGDWSISAFG---GSFGMP 357
            +G+PRA  +R+WA TFH+FAATV+K NG L+W E ++  D           A F +  IG+ EQ+ LV + L   +    D+       S+ G         DA   G    WS +A G   GS+GMP
Sbjct:  192 VGVPRAQADRVWAATFHSFAATVLKQNGHLLWPESEE-SDLGWSAASSRRRATFGLDMIGHAEQVDLVARILADSDRGGWDSRDDLAAASYKG---------DAAFEG---PWSATAGGRSNGSWGMP 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2302.6170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMX7_ECTSI7.220e-835.94DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2302contigH-paniculata_contig2302:12456..13195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D7FMX7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.2771182-CDS-H-paniculata_contig2302:12455..127321622929646.2771182-CDS-H-paniculata_contig2302:12455..12732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2302 12456..12732 -
1691480949.6928554-CDS-H-paniculata_contig2302:12455..127321691480949.6928554-CDS-H-paniculata_contig2302:12455..12732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2302 12456..12732 -
1622929646.2945726-CDS-H-paniculata_contig2302:13100..131951622929646.2945726-CDS-H-paniculata_contig2302:13100..13195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2302 13101..13195 -
1691480949.7038965-CDS-H-paniculata_contig2302:13100..131951691480949.7038965-CDS-H-paniculata_contig2302:13100..13195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2302 13101..13195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2302.6170.1prot_H-paniculata_contig2302.6170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2302 12456..13195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2302.6170.1

>prot_H-paniculata_contig2302.6170.1 ID=prot_H-paniculata_contig2302.6170.1|Name=mRNA_H-paniculata_contig2302.6170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MGLPRALGERIWATTFHAFAATVVKHNGDLIWSEPDKGKDRPTKNGHGTG
AARFPIIGNEEQLSLVFQALKRVEDAAGSKVKKSFSGSNSNAVRGVDATA
PGGTGDWSISAFGGSFGMPKAPLG
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mRNA from alignment at H-paniculata_contig2302:12456..13195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2302.6170.1 ID=mRNA_H-paniculata_contig2302.6170.1|Name=mRNA_H-paniculata_contig2302.6170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=740bp|location=Sequence derived from alignment at H-paniculata_contig2302:12456..13195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCTACCGCGAGCCCTGGGTGAGCGGATATGGGCGACAACGTTTCA
CGCCTTTGCCGCTACCGTGGTCAAGCACAACGGGGACCTCATCTGGTGTG
TGCATGTAATTCGATCCGTTTACCTGTTTCCTTTTCTTTTTTTTCTTTTC
TTTCCCTTAGTATAGTTATCACAATGGTTGCATACCAGTAGTCTCTCACT
TTGTTTCGGTTTGCTTACCTTTGACAAGGCCTGCTGCTTGTTTTTCGTGT
TGTTCAGCTTACATAAAACCTTCCTTGTCTTACGGGTCACTCAGATCTGG
AGAGAGGCAATTTTTTCTATCACCCCCGCCAGCGAACCCTTGTGCTATTT
AATAGGGATGCGAGGTCAGTGAGTCGCTTTCAGCTACGACATGCGTTGGT
CGCAAGTACACCCTTTCCCCCAACCATGGCCGCCGCCGTGGATATCTTAT
ATAATGTGTGTAGGTCGGAGCCCGACAAGGGCAAAGATAGACCCACGAAA
AATGGGCATGGGACAGGTGCCGCGAGATTTCCGATCATAGGCAACGAGGA
ACAGCTCTCCCTTGTCTTTCAAGCCCTGAAGCGGGTCGAGGATGCCGCTG
GTAGCAAGGTAAAAAAAAGCTTCAGTGGCAGCAACAGTAACGCGGTTCGA
GGCGTTGATGCGACTGCGCCAGGGGGGACTGGTGATTGGTCAATTTCTGC
TTTCGGTGGGTCGTTCGGAATGCCGAAGGCGCCTTTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2302:12456..13195-

>mRNA_H-paniculata_contig2302.6170.1 ID=mRNA_H-paniculata_contig2302.6170.1|Name=mRNA_H-paniculata_contig2302.6170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig2302:12456..13195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCTACCGCGAGCCCTGGGTGAGCGGATATGGGCGACAACGTTTCA
CGCCTTTGCCGCTACCGTGGTCAAGCACAACGGGGACCTCATCTGATGGG
CCTACCGCGAGCCCTGGGTGAGCGGATATGGGCGACAACGTTTCACGCCT
TTGCCGCTACCGTGGTCAAGCACAACGGGGACCTCATCTGGTCGGAGCCC
GACAAGGGCAAAGATAGACCCACGAAAAATGGGCATGGGACAGGTGCCGC
GAGATTTCCGATCATAGGCAACGAGGAACAGCTCTCCCTTGTCTTTCAAG
CCCTGAAGCGGGTCGAGGATGCCGCTGGTAGCAAGGTAAAAAAAAGCTTC
AGTGGCAGCAACAGTAACGCGGTTCGAGGCGTTGATGCGACTGCGCCAGG
GGGGACTGGTGATTGGTCAATTTCTGCTTTCGGTGGGTCGTTCGGAATGC
CGAAGGCGCCTTTGGGCGTCGGAGCCCGACAAGGGCAAAGATAGACCCAC
GAAAAATGGGCATGGGACAGGTGCCGCGAGATTTCCGATCATAGGCAACG
AGGAACAGCTCTCCCTTGTCTTTCAAGCCCTGAAGCGGGTCGAGGATGCC
GCTGGTAGCAAGGTAAAAAAAAGCTTCAGTGGCAGCAACAGTAACGCGGT
TCGAGGCGTTGATGCGACTGCGCCAGGGGGGACTGGTGATTGGTCAATTT
CTGCTTTCGGTGGGTCGTTCGGAATGCCGAAGGCGCCTTTGGGC
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