mRNA_H-paniculata_contig2301.6168.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI) HSP 1 Score: 168 bits (425), Expect = 5.860e-41 Identity = 146/261 (55.94%), Postives = 168/261 (64.37%), Query Frame = 1
Query: 1 ARGGLEALASAGTSRSNVGFAPRDGSGGTGGGTAAEM---VGGLRVAVGPPPSAPAVDGLGLGSGRWERESRVPSSPALPEKHRKRFTREELMALRKVFTRPLRSMPIVGADISVIVSEEPLEPVTATQADQEEINKLWAAAGERGSARTRRPRXXXXXXXXXXXXXXXXXXXXXXXERGTAAMDPSAMNRLENEDDLWDDLPADGA-----NADDQTGGLHG---MDLQAMAEAADKFQEQMDSMARRMEDVELHEQREE 750
ARGGLEALASA T R GFAPRDGSGG GGTAA VGG+R+A GP GLG GRWERE + ++ ++ +RF+ EEL+ALR+ TRPL MP++G DIS+IVSEEPLEPVTAT ADQE I+++WAAA ER R RR R XXXXXXXXXXXXXXXXXXXXX +A D +GGLHG MDL +MA+ ADKFQEQMDSM RRME VELHEQ+EE
Sbjct: 84 ARGGLEALASATTQR---GFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGP-PGRWERER----AASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRIWAAAAERQPMRGRRSRWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAADGSGGLHGVEGMDLLSMAQKADKFQEQMDSMKRRMEGVELHEQKEE 336
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A6H5KUY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY1_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.630e-27 Identity = 79/138 (57.25%), Postives = 97/138 (70.29%), Query Frame = 1
Query: 1 ARGGLEALASAGTSRSNVGFAPRDGSGGTGGGTAAEM---VGGLRVAVGPPPSAPAVDGLGLGSGRWERESRVPSSPALPEKHRKRFTREELMALRKVFTRPLRSMPIVGADISVIVSEEPLEPVTATQADQEEINKL 405
ARGGLEALASA T R GFAPRDGSGG GGTAA VGG+R+A GP GLG GRW+RE + ++ ++ +RF+ EEL+ALR+ TRPL MP++G DIS+IVSEEPLEPVTAT ADQE I+++
Sbjct: 123 ARGGLEALASATTQR---GFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGP-PGRWDRER----AASIDKRKVQRFSPEELLALRRAPTRPLGKMPVLGGDISIIVSEEPLEPVTATPADQEAISRV 252
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE) HSP 1 Score: 126 bits (316), Expect = 7.110e-26 Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1
Query: 3754 DPTRAPSPLVGPTGEPLEKPAAEKPAPVPLAAAASAFPAGLNQKARKAYEKKLKQDAARAXXXXXXXXXXXXXAWGNAATAGPKKMTLAEIQAEEGKRAAQ-AAFQSPSKAQ 4086
DPTR PSPLVGPTGEPLEKPAAEKP PVPL AAASA PAGLNQKARKAYEKKLKQ+AA+ XXXXXXXXXXXXXAWG+ A A K +LAEIQAEEGKR AQ AA +P++AQ
Sbjct: 261 DPTRPPSPLVGPTGEPLEKPAAEKPQPVPLVAAASAIPAGLNQKARKAYEKKLKQEAAKXXXXXXXXXXXXXXAWGSNAVATVPKKSLAEIQAEEGKRQAQEAALHTPAQAQ 372
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: F0YBM2_AURAN (GYF domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM2_AURAN) HSP 1 Score: 69.3 bits (168), Expect = 6.480e-11 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 2287 WYYLDPQMRVQGPFDGSEMRSWLEAGYFQRNLPVRRGATGDFVALERLF 2433
W+Y DPQ + QGPF+ +MR W AGYF +LP+R+G +GDFV L RLF
Sbjct: 5 WFYKDPQGQHQGPFEAPQMRQWFNAGYFDDDLPLRQGESGDFVPLGRLF 53
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A6H5KW39_9PHAE (GYF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW39_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 6.620e-7 Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query: 2284 AWYYLDPQMRVQGPFDGSEMRSWLEAGYFQ 2373
W+YLDPQ R+QGPFDGSEMR W EAGYFQ
Sbjct: 177 GWFYLDPQNRIQGPFDGSEMRQWFEAGYFQ 206
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A7R9Y2L5_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y2L5_9VIRI) HSP 1 Score: 58.2 bits (139), Expect = 3.580e-6 Identity = 19/52 (36.54%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 2281 TAWYYLDPQMRVQGPFDGSEMRSWLEAGYFQRNLPVRRGATGDFVALERLFP 2436
+ WYY DP+ ++ GP+ ++ W AG++ R+LPVR+G++G++ L + P
Sbjct: 30 SGWYYRDPKGQIHGPWKAGDIAKWFRAGFYGRDLPVRKGSSGEWTTLAQAMP 81
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A1Y1XMY2_9FUNG (GYF domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XMY2_9FUNG) HSP 1 Score: 60.5 bits (145), Expect = 2.860e-5 Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1
Query: 2287 WYYLDPQMRVQGPFDGSEMRSWLEAGYFQRNLPVRRGATGDFVALERLFPGDGGNTAFLETSTRH--EGRLRAEANE 2511
WYY DP +VQGPF EM+ W AGYF++NLP++R +F +L + G F+ + ++ E L +ANE
Sbjct: 326 WYYKDPTGKVQGPFLYEEMQEWYNAGYFEKNLPIKREDNVEFKSLASMIEQYGEEKPFIIDAEKYKKEKELSLKANE 402
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A7S2WQB5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WQB5_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.860e-5 Identity = 28/51 (54.90%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 2287 WYYLDPQMRVQGPFDGSEMRSWLEAGYFQRNLPVRRGATGD-FVALERLFP 2436
W+Y DP VQGPF EMR WLE GYF +L VRRG G F L + FP
Sbjct: 536 WFYQDPHGNVQGPFKSEEMREWLEHGYFNLDLMVRRGRDGGPFTPLGQRFP 586
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Match: A0A2R5G8T3_9STRA (GRB10-interacting GYF protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8T3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 5.030e-5 Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 2287 WYYLDPQMRVQGPFDGSEMRSWLEAGYFQRNLPVRRGATGD-FVALERLFP 2436
W+Y DPQ VQGPF EMR WL+ GYF +L VRRG D F L + FP
Sbjct: 651 WFYRDPQGNVQGPFKSEEMREWLQHGYFNPDLLVRRGHGNDPFAPLGQQFP 701 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2301.6168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2301.6168.1 >prot_H-paniculata_contig2301.6168.1 ID=prot_H-paniculata_contig2301.6168.1|Name=mRNA_H-paniculata_contig2301.6168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1362bp ARGGLEALASAGTSRSNVGFAPRDGSGGTGGGTAAEMVGGLRVAVGPPPSback to top mRNA from alignment at H-paniculata_contig2301:360..21040- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2301.6168.1 ID=mRNA_H-paniculata_contig2301.6168.1|Name=mRNA_H-paniculata_contig2301.6168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20681bp|location=Sequence derived from alignment at H-paniculata_contig2301:360..21040- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2301:360..21040- >mRNA_H-paniculata_contig2301.6168.1 ID=mRNA_H-paniculata_contig2301.6168.1|Name=mRNA_H-paniculata_contig2301.6168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8172bp|location=Sequence derived from alignment at H-paniculata_contig2301:360..21040- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |