mRNA_H-paniculata_contig22990.6158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22990.6158.1
Unique NamemRNA_H-paniculata_contig22990.6158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.000e-35
Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLR 252
            VDLVCNGVWRPVQQVLMTRLSSIFATGM+A Q +N++LCMEFLEGL+ + G  K  ++R RLL  PSV EFKARWNLPIYFQLR
Sbjct:  480 VDLVCNGVWRPVQQVLMTRLSSIFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRHRLLGQPSVAEFKARWNLPIYFQLR 563          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.630e-34
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQ-VLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLR 252
            VDLVCNGVWRPVQQ VLMTRLSSIFATGM+  Q +N+MLCMEFLEGL+ + G  K  ++R RLL  PSV EFKARWNLPIYFQLR
Sbjct:  486 VDLVCNGVWRPVQQEVLMTRLSSIFATGMVTAQHSNFMLCMEFLEGLAAIAGSEKRLRIRHRLLGQPSVAEFKARWNLPIYFQLR 570          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: I2CQT6_NANGC (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQT6_NANGC)

HSP 1 Score: 89.4 bits (220), Expect = 7.910e-19
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLRWA 258
            +D VCN VWRPVQQ L  RL+SIFA G+ +   TNY+  M FL+ L+ + G     ++R R+L+H    EF++RWNL +YF LR++
Sbjct:  364 LDFVCNSVWRPVQQALCCRLASIFAPGIASILHTNYVASMTFLDELATLTGPENTDRLRARILSHDVTKEFQSRWNLSVYFHLRFS 449          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: W7TW36_9STRA (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW36_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.020e-19
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLRWA 258
            +D VCN VWRPVQQ L  RL+SIFA G+ +   TNY+  M FL+ L+ + G     ++R R+L+H    EF++RWNL +YF LR++
Sbjct:  364 LDFVCNSVWRPVQQALCCRLASIFAPGIASILHTNYVASMTFLDELATLTGPENTDRLRARILSHDVTKEFQSRWNLSVYFHLRFS 449          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.900e-15
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEG--KWTQVRRRLLAHPSVVEFKARWNLPIYFQLR 252
            VDL+ N VW P+Q  L+ RL SIFATG+      NY L       L+  C  G  +    ++RL AHP+  +F+ARWNLP+YFQLR
Sbjct:  425 VDLLGNAVWAPLQASLVARLPSIFATGLADVFHRNYALSQALPRRLAEACSGGGREGGSAQQRLEAHPASADFRARWNLPVYFQLR 510          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: A0A8K1FH08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH08_PYTOL)

HSP 1 Score: 70.9 bits (172), Expect = 2.480e-12
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLRWAYL 264
            VD++ N VW+P+ ++L T+ + IF T       TNY + M FL  + + CG      ++ R   H SV+EFK +WN+ +YFQLR+  L
Sbjct:  341 VDILGNAVWKPLFEILSTKHAVIFKTADADRFHTNYTISMGFLTAMEQFCGS---EAMKLRFRTHESVIEFKEKWNMDVYFQLRYNQL 425          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: M4BZJ7_HYAAE (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZJ7_HYAAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.580e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLS-RVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLR 252
            VD++ N +W+P+Q+VL T+ S IF          NY   M FL  +  R C   K   ++ R  +H SVVEFK +WNL +YFQLR
Sbjct:  340 VDILGNAIWKPLQEVLSTKFSVIFQAADPDRFHKNYTTSMHFLAEIEGRFC---KSEALKSRFRSHESVVEFKEKWNLDVYFQLR 421          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: UPI001F071865 (conserved oligomeric Golgi complex subunit 2 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F071865)

HSP 1 Score: 64.7 bits (156), Expect = 3.640e-10
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    4 DLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLRW 255
            D + N VW  + + +  R+S +F  G   T    Y + MEF+    R CG        RRL AHPS + F  +WNLP+YFQLR+
Sbjct:  305 DFLVNSVWPEIIRAIEERISFLFNPGNPDTFYERYSVTMEFVRRFERQCGSQASV---RRLRAHPSYISFHNKWNLPVYFQLRY 385          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: A0A3R7H9J4_9STRA (Conserved oligomeric Golgi complex subunit 2 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H9J4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.290e-10
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLR 252
            VD++ N +W+P+Q++L T+   IF          +Y + M FL  +     + K  ++R R  AH SVVEFK +WN+ +YFQLR
Sbjct:  346 VDILGNAIWKPLQEILSTKHGIIFQAADPERFHQSYTISMRFLADIEERFCKTKIMKIRFR--AHESVVEFKEKWNIDVYFQLR 427          
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Match: A0A3F2S2H8_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2H8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.400e-10
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVCGEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLR 252
            VD++ N +W+P+Q++L T+   IF          +Y + M FL  +     + K  ++R R  AH SVVEFK +WN+ +YFQLR
Sbjct:  346 VDILGNAIWKPLQEILSTKHGIIFQAADPERFHQSYTISMRFLADIEERFCKTKIMKIRFR--AHESVVEFKEKWNIDVYFQLR 427          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22990.6158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMA5_ECTSI5.000e-3576.19Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE6.630e-3475.29Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
I2CQT6_NANGC7.910e-1947.67Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
W7TW36_9STRA8.020e-1947.67Conserved oligomeric Golgi complex subunit 2 n=2 T... [more]
A0A835ZA59_9STRA4.900e-1546.51Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A8K1FH08_PYTOL2.480e-1238.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BZJ7_HYAAE5.580e-1142.35Conserved oligomeric Golgi complex subunit 2 n=2 T... [more]
UPI001F0718653.640e-1039.29conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A3R7H9J4_9STRA9.290e-1038.10Conserved oligomeric Golgi complex subunit 2 n=2 T... [more]
A0A3F2S2H8_9STRA9.400e-1038.10Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22990contigH-paniculata_contig22990:99..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.2e-30
Seed eggNOG ortholog2880.D8LMA5
Preferred nameCOG2
KEGG koko:K20289
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0017119,GO:0031984,GO:0032991,GO:0033036,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0048193,GO:0051179,GO:0051234,GO:0071702,GO:0071705,GO:0071840,GO:0098791,GO:0099023
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2307@1,KOG2307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.4727201-CDS-H-paniculata_contig22990:98..3261622929643.4727201-CDS-H-paniculata_contig22990:98..326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22990 99..326 -
1691480948.412133-CDS-H-paniculata_contig22990:98..3261691480948.412133-CDS-H-paniculata_contig22990:98..326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22990 99..326 -
1622929643.5403008-CDS-H-paniculata_contig22990:1169..12111622929643.5403008-CDS-H-paniculata_contig22990:1169..1211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22990 1170..1211 -
1691480948.423271-CDS-H-paniculata_contig22990:1169..12111691480948.423271-CDS-H-paniculata_contig22990:1169..1211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22990 1170..1211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22990.6158.1prot_H-paniculata_contig22990.6158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22990 99..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22990.6158.1

>prot_H-paniculata_contig22990.6158.1 ID=prot_H-paniculata_contig22990.6158.1|Name=mRNA_H-paniculata_contig22990.6158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
VDLVCNGVWRPVQQVLMTRLSSIFATGMMATQRTNYMLCMEFLEGLSRVC
GEGKWTQVRRRLLAHPSVVEFKARWNLPIYFQLRWAYLF*
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mRNA from alignment at H-paniculata_contig22990:99..1211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22990.6158.1 ID=mRNA_H-paniculata_contig22990.6158.1|Name=mRNA_H-paniculata_contig22990.6158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1113bp|location=Sequence derived from alignment at H-paniculata_contig22990:99..1211- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATCTTGTGTGCAATGGAGTGTGGCGACCAGTTCAACAGGTGCATTT GTTTTTTAGTTCATCGCTGAGTTTAAAATCAATCCCGTGCCTCGTGGTCC TCGTCCCTTTGCTTGAAAGTTTATATATATATGTATATATATGTGTGTGT GTGTGTATAATGGCTCTGGCAGGAAATATCCCCAATCAGTGGTTGTGCTG TTAACGTTGGTTGGTAAGGAAGTGATTTTTCTGTTCTACGCGTGAAGAAT TTTGTTATTAAAAGTTTTTATTTTTATTTTTTATCCTTCCGAATCGAATA CCCCCATTGGTGTTGATGTACCTGATAGAAGGAGGAGGCAATAGGGTGGG TTTATATTGTTCGAGTCATCCCCCCCCTCTCCCCCCCCCAAAAAAAGAAG AAGAAACGTATGCATCTTGCTTGCCTCGGTATAATCAGAGTCATCCCCCA CAAGAGTTGAGTGAAATTAAAGGCAAAGCGACTTGCGACTTCTGCTAGTT AGTTGGACATCATTATTGGACTCTTGCAACGTGTGTGAAAGTATCGATTT GTCTTTTTCGTTACATATCGGCATATAACGGAACGTAAGGAAATGTATCG AAACGTAACGTAACGTAACACAACGTAACGTAACGTAACATAACGTAACC GTAACGAAATATGACGATACGCGACGAAACGTAATGCATAGTAACGTAAT GAAGCGAAATGTAACGTAAACGTAAACGTAGCCGAAACGAAACGAAACGA AACGAAACGAAACGAAACGAAACGAAACGAAACGAAACGAAACGAAACGA AACGAAACGAAACGAAAAAGTGAACGAAACGTAACGTAACGTGACGAAAC CAAACCAAACCAAATAAAATAAAAACTAATAACAGGTGTTGATGACACGA CTGTCGTCCATCTTCGCCACGGGGATGATGGCGACGCAGCGCACGAACTA CATGCTGTGCATGGAATTCTTAGAAGGGCTGTCACGAGTTTGCGGCGAGG GCAAATGGACACAGGTTCGCAGACGCCTCCTGGCTCACCCCTCCGTGGTA GAGTTCAAGGCCCGATGGAACTTGCCCATTTACTTCCAGCTGAGGTGGGC ATATCTATTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22990:99..1211-

>mRNA_H-paniculata_contig22990.6158.1 ID=mRNA_H-paniculata_contig22990.6158.1|Name=mRNA_H-paniculata_contig22990.6158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig22990:99..1211- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATCTTGTGTGCAATGGAGTGTGGCGACCAGTTCAACAGGTGGATCT
TGTGTGCAATGGAGTGTGGCGACCAGTTCAACAGGTGTTGATGACACGAC
TGTCGTCCATCTTCGCCACGGGGATGATGGCGACGCAGCGCACGAACTAC
ATGCTGTGCATGGAATTCTTAGAAGGGCTGTCACGAGTTTGCGGCGAGGG
CAAATGGACACAGGTTCGCAGACGCCTCCTGGCTCACCCCTCCGTGGTAG
AGTTCAAGGCCCGATGGAACTTGCCCATTTACTTCCAGCTGAGGTGGGCA
TATCTATTTTAGGTGTTGATGACACGACTGTCGTCCATCTTCGCCACGGG
GATGATGGCGACGCAGCGCACGAACTACATGCTGTGCATGGAATTCTTAG
AAGGGCTGTCACGAGTTTGCGGCGAGGGCAAATGGACACAGGTTCGCAGA
CGCCTCCTGGCTCACCCCTCCGTGGTAGAGTTCAAGGCCCGATGGAACTT
GCCCATTTACTTCCAGCTGAGGTGGGCATATCTATTTTAG
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