prot_H-paniculata_contig22950.6147.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig22950.6147.1
Unique Name	prot_H-paniculata_contig22950.6147.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	472

Homology

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: D7FPX0_ECTSI (RNA polymerase sigma factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX0_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 4.730e-92
Identity = 186/392 (47.45%), Postives = 247/392 (63.01%), Query Frame = 0

Query:  102 TPPLSVEEERALINQIQEARLLRRMRKRL----VTAGGKN-------------GEGPLMPPAMWAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSAVKEYHRARKALATQLGRRPSESEIANFFVN------ERFNNALTADTGGAAFNILPMTELKIVATIPGKGLTGAESAAGVDGVGVERQSLATEDAAVARMRKRRLDLLAAVQRVTSLDSIVMNADGDT-VPLAEVVEGFGGNLQ-GDPLRAAEDRRLSSLLPKVLTPRQAELVRLACGLVDGRPRSMQECAQQLCLSVGRTRELFDASLQKLRIAVAVDSV 468
            TP L+ EEERAL+ +I+ AR LR +++ L     TA G+              G G  +    WAREAG+ V++L   +Q G+EAK+TL+ERNMPMV+++V+ QYRWRL GGQVS ADL+QEG++ALGVAAE FD     RFLTYA++ +RDKLD+A+A GN+AISVP +A+KE HRAR+ L  +LGR PSE+E+ANFF N      +    A   D G                      +T  E A       V+  S   E    AR R+RRL+LL+AVQ+VTS+D ++  +DG T VPL   V+   G+L+ G P  A  D  ++ LLP+VLTPRQA LVR+ACGL DG+P +M EC+++L LSV RT+ LFD+SLQKLR A   D +
Sbjct:  130 TPALTTEEERALLAKIKNARTLRDIQRGLEAAAATAAGRGEKGALGDGRSADGGAGTAVTMGAWAREAGVEVEDLPRVLQEGIEAKQTLVERNMPMVIRMVEGQYRWRLRGGQVSFADLLQEGAYALGVAAERFDPTMPNRFLTYALYTVRDKLDVALARGNSAISVPATALKEVHRARRELTGRLGRTPSEAELANFFANGVVVVGDAEPAASAGDGGIRRGGADXXXXXXXXXXXXXXAVTDGEFA-------VKAASSDREARQQARTRRRRLNLLSAVQKVTSIDRLIRASDGSTMVPL---VDTLVGDLEDGQPRSAGGD--IAELLPRVLTPRQASLVRMACGLSDGKPMTMAECSKELSLSVARTKSLFDSSLQKLRAAAEADDL 509

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: Q2JS52_SYNJA (RNA polymerase sigma factor SigA n=6 Tax=Synechococcus TaxID=1129 RepID=Q2JS52_SYNJA)

HSP 1 Score: 90.1 bits (222), Expect = 6.950e-16
Identity = 60/179 (33.52%), Postives = 95/179 (53.07%), Query Frame = 0

Query:  105 LSVEEERALINQIQEARLLRRMRKRLVTAGGKNGEGPLMPPAMWAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSAVKEYHRARKA---LATQLGRRPSESEIA 280
            L  +EE  L  +I +   L R R+ +    G   +   +P  +WA E  + + E + R+  G  AKE +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV   +   R +K    L+ +LGRRP+E EIA
Sbjct:  104 LRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWAEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEEEIA 277

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: Q59965_SYNP2 (RNA polymerase sigma factor SigA n=7 Tax=Cyanobacteria TaxID=1117 RepID=Q59965_SYNP2)

HSP 1 Score: 86.7 bits (213), Expect = 7.800e-15
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 0

Query:  105 LSVEEERALINQIQEARLLRRMRKRLVTAGGKNGEGPLMPPAMWAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSAVKEYHRARKA---LATQLGRRPSESEIA 280
            L  EEE  L  +I +   L RMR++L        E  +     WA  AG+ +K+ + R+  G  AK+ +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV   +   R +K    L+ +LGR+P+E EIA
Sbjct:   80 LRAEEEIELARKIADLLELERMREQLT-----EHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIA 248

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: A0A4D9CN88_9STRA (RNA_pol_sigma70 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CN88_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.330e-15
Identity = 95/327 (29.05%), Postives = 143/327 (43.73%), Query Frame = 0

Query:  148 WAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSA---VKEYHRARKALATQLGRRPSESEIANF---------FVNERFNNALTADTGGAAFNILPMTELKIVATIPGKGLTGAESAAGVDGVGVERQSLATEDAAVARMRKRRLDLLAAVQRVTSLDSIVMNADGDTVPLAEVV--EGFGGNLQGDPLRAAEDRRLSSLLPKVLTPRQAELVRLACGLVDGRPRSMQECAQQLCLSVGRTRELFDASLQKLR 460
            WA   G+  + L E + A  +AK T+I  NM +VM IV+   R+   G Q+   DL+QEG   L  AAE FD  R  +F TYA W I+  +  AVA  +  + +PV     + +  RA + L++QLGR+P+E+EIA           F+ ER  + L+ D                 AT P  G           G+G E                           V   DSI      D  PL +V   E +        +R   +R L SL      PR+A++V++  GLVDG+ R+++E      ++  R R++   +L K++
Sbjct:  243 WADVLGISDRALAEALTAAADAKTTMIRANMRLVMSIVR---RYLSRGVQLK--DLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMD-----------------ATRPSGGRKSGS------GIGDE---------------------------VRVSDSI-----SDAEPLQDVKADEAY--------MREQVERLLDSL-----NPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIK 496

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: A0A2T2RM25_9CYAN (RNA polymerase sigma factor SigA n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RM25_9CYAN)

HSP 1 Score: 82.8 bits (203), Expect = 1.510e-13
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 0

Query:  105 LSVEEERALINQIQEARLLRRMRKRLVTAGGKNGEGPLMPPAMWAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSAVKEYHRARKA---LATQLGRRPSESEIA 280
            L  +EE  L  +I E   L R+R RL+    +           WA E  + ++E +  ++ G  AKE +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV   +   R +K    L+ +LGR+P+E EIA
Sbjct:   82 LRADEEIELARKISELLELERVRDRLIDRLEREPNHH-----EWAEEVNMDLREFRRCLRYGQRAKEKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIA 250

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: A0A2T2S314_9CYAN (RNA polymerase sigma factor SigA n=1 Tax=Cyanobacteria bacterium QS_8_64_29 TaxID=1919134 RepID=A0A2T2S314_9CYAN)

HSP 1 Score: 82.8 bits (203), Expect = 1.720e-13
Identity = 62/179 (34.64%), Postives = 91/179 (50.84%), Query Frame = 0

Query:  105 LSVEEERALINQIQEARLLRRMRKRLVTAGGKNGEGPLMPPAMWAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPV---SAVKEYHRARKALATQLGRRPSESEIA 280
            L  +EE  L  QI E   L R R  L  A  +    P      WA EAG+ + E +  +     AKE +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV     +    +  K L+ +LGR+PSE EIA
Sbjct:   99 LRADEEIELARQIAELLELERSRDELADALERE---PTQQE--WAAEAGMPLAEFQRYLHTRRRAKEKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQELGRKPSEEEIA 267

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: UPI0019C5F06C (RNA polymerase sigma factor RpoD n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019C5F06C)

HSP 1 Score: 82.8 bits (203), Expect = 1.850e-13
Identity = 61/200 (30.50%), Postives = 97/200 (48.50%), Query Frame = 0

Query:  105 LSVEEERALINQIQEARLLRRMRKRLVTAGGKNGEGPLMPPAM---------------------WAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSAVKEYHRARKA---LATQLGRRPSESEIA 280
            L  +EE  L  QI +   + R+RK L  +    G   L+P  +                     WA   G+  +E + R+  G  AK+ +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV   +   R +K    L+ +LGR+P+E EIA
Sbjct:   84 LRADEEIELARQIADLLAMERLRKGLPESENVLGSDELLPEGLLEGGFELQLEPITESEQEIRRWAEAVGVPYEEFRTRLAFGRRAKDKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIA 278

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: UPI0019AC8B5D (RNA polymerase sigma factor RpoD n=1 Tax=Gloeobacterales cyanobacterium ES-bin-313 TaxID=2812629 RepID=UPI0019AC8B5D)

HSP 1 Score: 82.0 bits (201), Expect = 3.250e-13
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 0

Query:  148 WAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPVSAVKEYHRARKA---LATQLGRRPSESEIAN 281
            WA  AG   +  +ER+  G  AK+ +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV   +   R +K    L+ +LGR+PSE EIAN
Sbjct:  145 WAEAAGSTYEAFRERLAYGRRAKDKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPSEEEIAN 276

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: A0A0G2HKB8_9SYNE (RNA polymerase sigma factor SigA n=1 Tax=Candidatus Synechococcus spongiarum SP3 TaxID=1604020 RepID=A0A0G2HKB8_9SYNE)

HSP 1 Score: 82.0 bits (201), Expect = 4.520e-13
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 0

Query:  148 WAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPV---SAVKEYHRARKALATQLGRRPSESEIA 280
            WA +  +  +  K R++ G  AKE +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV     +    ++ K L+ +LGR+PSE EIA
Sbjct:  210 WAEQVSMPYRSFKRRLKLGRRAKEKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLVRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKSTKTLSQELGRKPSEEEIA 340

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BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Match: A0A7X3XGU6_9SYNE (RNA polymerase sigma factor SigA n=4 Tax=Synechococcus TaxID=1129 RepID=A0A7X3XGU6_9SYNE)

HSP 1 Score: 82.0 bits (201), Expect = 4.790e-13
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 0

Query:  148 WAREAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVSTADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAISVPV---SAVKEYHRARKALATQLGRRPSESEIA 280
            WA +  +  +  K R++ G  AKE +++ N+ +V+ I +   ++   G  +S  DL+QEGS  L  AAE FD ++  +F TYA W IR  +  A+A  +  I +PV     +    ++ K L+ +LGR+PSE EIA
Sbjct:  226 WAEQVSMPYRSFKRRLKLGRRAKEKMVQSNLRLVVSIAK---KYMNRG--LSFQDLIQEGSLGLVRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKSTKTLSQELGRKPSEEEIA 356

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig22950.6147.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPX0_ECTSI	4.730e-92	47.45	RNA polymerase sigma factor n=2 Tax=Ectocarpus Tax...	[more]
Q2JS52_SYNJA	6.950e-16	33.52	RNA polymerase sigma factor SigA n=6 Tax=Synechoco...	[more]
Q59965_SYNP2	7.800e-15	34.08	RNA polymerase sigma factor SigA n=7 Tax=Cyanobact...	[more]
A0A4D9CN88_9STRA	9.330e-15	29.05	RNA_pol_sigma70 domain-containing protein n=2 Tax=...	[more]
A0A2T2RM25_9CYAN	1.510e-13	32.96	RNA polymerase sigma factor SigA n=1 Tax=Cyanobact...	[more]
A0A2T2S314_9CYAN	1.720e-13	34.64	RNA polymerase sigma factor SigA n=1 Tax=Cyanobact...	[more]
UPI0019C5F06C	1.850e-13	30.50	RNA polymerase sigma factor RpoD n=1 Tax=Gloeobact...	[more]
UPI0019AC8B5D	3.250e-13	37.23	RNA polymerase sigma factor RpoD n=1 Tax=Gloeobact...	[more]
A0A0G2HKB8_9SYNE	4.520e-13	35.29	RNA polymerase sigma factor SigA n=1 Tax=Candidatu...	[more]
A0A7X3XGU6_9SYNE	4.790e-13	35.29	RNA polymerase sigma factor SigA n=4 Tax=Synechoco...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..176
None	No IPR available	GENE3D	1.20.120.1810		coord: 103..245 e-value: 5.5E-19 score: 71.0
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 49..465
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..471
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.493
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 173..236 e-value: 5.4E-7 score: 29.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 396..468 e-value: 4.1E-7 score: 31.6
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 102..237
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 375..462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig22950	contig	H-paniculata_contig22950:1960..3375 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig22950.6147.1	mRNA_H-paniculata_contig22950.6147.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig22950 1960..3375 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig22950.6147.1 ID=prot_H-paniculata_contig22950.6147.1|Name=mRNA_H-paniculata_contig22950.6147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=472bp
LKRALSAACVAGAAALTSAFVAPVPSQHRLHNLSGKNAGSSQCCRLSRSR
ENSCVRRTAGHNNRQAAEMSAAVVQQPPPTTAASAAGTRDTGATVRLQLP
PTPPLSVEEERALINQIQEARLLRRMRKRLVTAGGKNGEGPLMPPAMWAR
EAGLGVKELKERIQAGMEAKETLIERNMPMVMKIVQDQYRWRLHGGQVST
ADLVQEGSFALGVAAEMFDLKRETRFLTYAVWIIRDKLDIAVATGNTAIS
VPVSAVKEYHRARKALATQLGRRPSESEIANFFVNERFNNALTADTGGAA
FNILPMTELKIVATIPGKGLTGAESAAGVDGVGVERQSLATEDAAVARMR
KRRLDLLAAVQRVTSLDSIVMNADGDTVPLAEVVEGFGGNLQGDPLRAAE
DRRLSSLLPKVLTPRQAELVRLACGLVDGRPRSMQECAQQLCLSVGRTRE
LFDASLQKLRIAVAVDSVSMV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007627	RNA_pol_sigma70_r2
IPR036388	WH-like_DNA-bd_sf
IPR013325	RNA_pol_sigma_r2
IPR013324	RNA_pol_sigma_r3/r4-like