mRNA_H-paniculata_contig2295.6144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2295.6144.1
Unique NamemRNA_H-paniculata_contig2295.6144.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2295.6144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2295contigH-paniculata_contig2295:10818..15107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size879
Cds size873
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2295.6144.1prot_H-paniculata_contig2295.6144.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2295 10824..15107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.28571-UTR-H-paniculata_contig2295:10817..108231622929642.28571-UTR-H-paniculata_contig2295:10817..10823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2295 10818..10823 +
1691480947.9023376-UTR-H-paniculata_contig2295:10817..108231691480947.9023376-UTR-H-paniculata_contig2295:10817..10823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2295 10818..10823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.30779-CDS-H-paniculata_contig2295:10823..109691622929642.30779-CDS-H-paniculata_contig2295:10823..10969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 10824..10969 +
1691480947.9144003-CDS-H-paniculata_contig2295:10823..109691691480947.9144003-CDS-H-paniculata_contig2295:10823..10969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 10824..10969 +
1622929642.3258517-CDS-H-paniculata_contig2295:13798..139301622929642.3258517-CDS-H-paniculata_contig2295:13798..13930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 13799..13930 +
1691480947.9283917-CDS-H-paniculata_contig2295:13798..139301691480947.9283917-CDS-H-paniculata_contig2295:13798..13930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 13799..13930 +
1622929642.3396804-CDS-H-paniculata_contig2295:14512..151071622929642.3396804-CDS-H-paniculata_contig2295:14512..15107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 14513..15107 +
1691480947.9370189-CDS-H-paniculata_contig2295:14512..151071691480947.9370189-CDS-H-paniculata_contig2295:14512..15107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 14513..15107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2295.6144.1

>prot_H-paniculata_contig2295.6144.1 ID=prot_H-paniculata_contig2295.6144.1|Name=mRNA_H-paniculata_contig2295.6144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MNVHSSGADSRPREVWVRSLRQETALQDRFRRAIHSQTAGSVANVGFDRW
DAAQRLQEQIDKTRGVECIKRLAQSRAIKDRFGRRAIMKDLQGSDLVGKG
GSIEDDPFNTYTEDNPTRLRALQKFGLDLGRVMKVTKSHAYDEKTTGTSP
MDDEGPGTSGKNYDGIAEGGTLHRRTKRCRRRGSETEQRIGNASTLSVNR
RERVKTKLKALEVLLSTAGPQEPLAEENSDDSDGGGKGRAIAGSGGDGSS
LGLLRSHSPMDENVDVGSGVRTDAVLTDTSHSKERTASSQK
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mRNA from alignment at H-paniculata_contig2295:10818..15107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2295.6144.1 ID=mRNA_H-paniculata_contig2295.6144.1|Name=mRNA_H-paniculata_contig2295.6144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4290bp|location=Sequence derived from alignment at H-paniculata_contig2295:10818..15107+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGCCATGAACGTGCACAGCAGCGGTGCCGATTCTCGGCCAAGAGAGGT
ATGGGTTCGGTCTCTACGTCAAGAGACTGCATTGCAAGACCGATTCCGTC
GGGCGATTCATTCGCAGACCGCTGGCAGCGTCGCCAATGTTGGATTCGAT
AGGTATGTGCCCTGCCCTGTTTGCTTGGAGATAAGACAGAGCTGCATGGT
GAACATCTCACGACCTCAGCGCAGCGATACTGCAGAGTACAGAGAGTAAA
ATACGACCCTAACGCTGCTCTGTGTCGGGTGTGGTTACGACGATGATTAG
GCTTTGATTTAGTCCAGTATTTACCAAGGAATCCAACGAGTTGTAAATTT
AGTACTGTATTTCAAAGATTTTCTTTTCTACAGTACTGGACCCACAATAG
GGCGGCATATTGACAAGCCAAAATCTCCCGCCTTATTCAGAATCCCGCCT
TCTCATGGGCGCCCGATGTAAGGCGGTAAATCGTCCTATTGCGGGTTATG
TCGCCAAACGCGATTTTGAATTATGCTATCACCTGACAGACGAGGCGTAG
GCGTGTGTGAGTGCAAGCAGAGCCCATACTCGTAAGCCCATCCAGCGCAC
GTGTCGTTATATTTGGTTGAGGTCGTCTTTTCCTTCTACCTTTCCAAGTT
ATCTTACTCCCCTACACATTTTTTTTTTCTGGTGTGGGAAAAAAACTCTT
GGTCATACCTCCCCTTGAACTACCTACCAGATCGCTGGGAGGCAACTGCG
AGCGGCATTTCATATACAGTAAACGGAACCCCAGAAAAAAACAGGAGGGA
AAAACAGTAAAACAATGGGTAATGCTCGCGAAAAGGGAAATACTCAACGC
GCGCTGAACCCCAAAGTGGGGAGAAAGCAAACAAACAAAAATGGTATATG
ATACTCCACTGAACGAACAAACGAGGAAAACACCTACAGCAACGACCAAT
GTCACATCAAGAAATCCCCTCACCACACGCAACCCCTGCTGCGTATCGAC
TTCACGCAAAGTCCTGCAAGAAATATCTCCTACGACTCCATGAACTCGAT
AAGTTTACTTTTGCGCGCGCCTGTGCTGTTACGGGCGCTCATTCATGTCA
GCTTGACCTTACGAAGGTAAAACGAGACGTCATGCAAAGCGCTCGTCAAA
GCCGCTTCCTCCAAAACACCAAAACTCTCCGCTAGGTGTGAGAACGGCAG
AGGCGGAATGACTGCCGCCTCCCCCGAAGCACCCCTGGCCTCGGATAGCA
CATCGCCTTCGTCGCCGGTACCACTACCCTCACCGCACTTGTGGCACTTG
TGACCGGTAGAGCTCAGCGGGTCCGGCGCGAGCTCTGGGAGTTTGCAGCG
ACTGTCAGCTACGCATGGCATGGCGGGTTCGCGGCTGTGCTGCTGTGTGT
GTGTGTTGGCTGATGAAATTGTTTGAAACAAGGCGGGGTGGTGGCGGAAC
AAGAAAAAGCCCGCCTTTTCGTTGGCGGGGGGGGGTCCGCACTAAGGCGG
GTTAGTACGGGCAAGAGCAACACCCGCTTTATTGAGCAAAACGTTGTGGC
AAGTCAAAAACACCTGCCTTATTGAGGGTCGCCTTTTTGCGGGTCCACTA
CTTCATTTTGTGTTTTCGCACGCAGTACTTGTAGTGCAATGCCAACCACG
GGTTCAATCAAGTATGCTCTTCCGATAAGCCTTCAGGGTGATGCGACGGG
CTTGATGTAACTGTACTGGGCAGTACGTTTGCAATGGATTTGAAACTGAG
ATCAGTGCAGGACAGGGAAATATATAGTTGAAAAGCCTGTCGGCGGCCGC
GCCTCCGCTAGGGACGCCCTACCGGGAGAGTGCTCCAGGCGCACTCTTAC
TTCCCTTACTTCGGCAGCAAGCAGCAGAGCAGAGGCTTTCGTGCAAACTA
CGGTGCAGCTTATTATGTTCGGGTTGTCAAACTAAGAGACGTTAACGGAA
CGAACTGGCATCGGCGAAAAAATATGCCCCTCAGAAAAATAGCGCCTGTA
TTTGTTTTGGCTCTTCCGTTGGTAGTTTTTTACTTGTTCATGGTCCAATA
GTTGTTCAGCATTCCAGCACCTGCTTCTTCTAGACTTTGCTTCGTTTGGA
TTCGTCTCTCAGCGAGCTGCTGATTTGACCCTTGGCATGCTCCATGCCGC
CTTGTATATATACCCTGCCGCACTTATTTTTCCCGCTATCTTGTCGCTTT
TTCTGCAACTGCTGATTTCGCATGGCTTTCAACCTGCTACTTCCCCTTTC
GTCAACGAATGTTTCATGGTGGCTAGATCTTCCCCAGACTGCCGAAGGGC
CGGCTGTGGTATTGTACCCCATTTAAATATGTTTTAACCCTGCATATTTT
AGCCATTCTACGGGTACGGAGTTTTTGCAATGCTGGCTAAATGTAATGCA
AAATACTGGTAGTAATTGCACAGACCCAGCAGACGTGAGCGGGTCACTAA
GCCGTATGCATGAAGTATGCTGCAAGCAACGAACTCAAGTTTCACCGACG
GTCCGCGTGCCCCGCCAAGAGGTAGGGCGTTGACAGGTGCGTTTCTCTAC
AGATCATGCACATACTGCCGGAAGTAATGCAATGTGGGTGATCACTATAG
CAAGTACGAGTATTCGAGAGTGCTCTACAAATTTCCAGTTTACACATGTT
CTGCCTACCGCAACACGTACTGCTTCATCGTACTTCACGGTAACAACGCA
ATCTGCAGTAAACTTTATGATTCTTTTTTTAAGTCATTCGTCTTACTGTG
CTAATTTCGTTTTGTATGTAGCATAAAATTCTCCGATGCCAATGCATATG
GGCTATGAACCATTGCTACAAACATAATCGCGTTTTCAAATCGTTGTTAA
AACGTTCCTGTGTATATGCTCGAAAGTGCGCACTCTGATTGGGTCAGATG
TTACCTGTCCTCGTACATCCGATCGCACCTCCGACGGATGACTTGCTTCG
TCCTCACGAACATATTCGTATTTTTATACAGGTGGGATGCCGCACAACGT
CTTCAGGAGCAGATCGACAAAACCCGCGGGGTAGAGTGCATCAAGCGACT
GGCACAGTCTCGCGCAATCAAAGATCGATTTGGTCGGCGTGCTATTATGA
AGGACCTTCAAGGGTGAGGCAAAACAGAGAAATACTCACTTATCACCAGA
GTACGCGCAACTTGTCCCATAATTCGCATAGAGTAAAGCTATATAATATC
CCTTGTGGCACACTTGTGGTAACTCCGTGTGCCCTACAAGACTACTTGGT
GGTTTTGTTGTCGCAAATAGTGAAATGGTGTCGGTCGGTGGGGTTCATTC
GTGCGCGGCGAAGTCTTTCACGGGACTGGGGGGCGACAGCAGGTAGAATT
CTCCTGTAGAGCATGGTACCAGACGATGGTTGATGGTGTAGACCGAACGC
AATACTATTCAACAGAAGCGCTCACGAAACCCTTCCAATAATAGTGCGTC
ACCTCGGGTTCTGATGTTGTCACCAATTCCATCTAAATTAGCTTGGGACG
TATCCTACGCTGGTTTGGTGTAAGTTCGTTCAATTCCAGCGAGTTGTGTC
TATCATAGACATGAGCAAACTTTCTCAGATGGTACACAATAGACCCGGTC
AGCAAGTTTTAAAACGCTTCACAACGACATGTGTTTTACTGGCCAACTGC
AAACATTGTATTCGCAACGCGCACTCACCTTGCTATTATTTGTAGGTCAG
ATCTCGTCGGTAAAGGCGGCAGCATTGAGGACGACCCCTTCAATACCTAC
ACCGAAGATAACCCAACCCGACTACGTGCGCTACAGAAGTTCGGTCTCGA
CCTCGGACGGGTCATGAAGGTGACGAAATCCCATGCATACGATGAGAAAA
CTACCGGTACTTCACCGATGGACGACGAGGGACCGGGTACAAGCGGGAAG
AACTATGACGGTATTGCGGAGGGCGGGACACTACACAGACGTACCAAACG
ATGTCGACGACGTGGTTCGGAGACGGAACAGAGAATCGGAAACGCTTCTA
CACTGTCGGTGAACCGGCGAGAGAGAGTGAAAACGAAGCTGAAAGCTCTG
GAAGTGCTCTTGTCCACCGCAGGGCCGCAAGAACCGCTGGCAGAAGAAAA
CAGCGATGATAGCGATGGCGGTGGTAAGGGTCGGGCTATCGCCGGCAGTG
GAGGCGATGGCAGTAGCCTGGGCCTACTGCGCAGTCATAGCCCTATGGAC
GAGAACGTGGACGTTGGCTCTGGCGTCCGTACCGATGCTGTTCTCACTGA
TACCAGTCACTCCAAGGAGAGAACAGCTTCCTCGCAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2295:10818..15107+

>mRNA_H-paniculata_contig2295.6144.1 ID=mRNA_H-paniculata_contig2295.6144.1|Name=mRNA_H-paniculata_contig2295.6144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig2295:10818..15107+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTGCACAGCAGCGGTGCCGATTCTCGGCCAAGAGAGGTATGGGT
TCGGTCTCTACGTCAAGAGACTGCATTGCAAGACCGATTCCGTCGGGCGA
TTCATTCGCAGACCGCTGGCAGCGTCGCCAATGTTGGATTCGATAGATGA
ACGTGCACAGCAGCGGTGCCGATTCTCGGCCAAGAGAGGTATGGGTTCGG
TCTCTACGTCAAGAGACTGCATTGCAAGACCGATTCCGTCGGGCGATTCA
TTCGCAGACCGCTGGCAGCGTCGCCAATGTTGGATTCGATAGGTGGGATG
CCGCACAACGTCTTCAGGAGCAGATCGACAAAACCCGCGGGGTAGAGTGC
ATCAAGCGACTGGCACAGTCTCGCGCAATCAAAGATCGATTTGGTCGGCG
TGCTATTATGAAGGACCTTCAAGGGTGGGATGCCGCACAACGTCTTCAGG
AGCAGATCGACAAAACCCGCGGGGTAGAGTGCATCAAGCGACTGGCACAG
TCTCGCGCAATCAAAGATCGATTTGGTCGGCGTGCTATTATGAAGGACCT
TCAAGGGTCAGATCTCGTCGGTAAAGGCGGCAGCATTGAGGACGACCCCT
TCAATACCTACACCGAAGATAACCCAACCCGACTACGTGCGCTACAGAAG
TTCGGTCTCGACCTCGGACGGGTCATGAAGGTGACGAAATCCCATGCATA
CGATGAGAAAACTACCGGTACTTCACCGATGGACGACGAGGGACCGGGTA
CAAGCGGGAAGAACTATGACGGTATTGCGGAGGGCGGGACACTACACAGA
CGTACCAAACGATGTCGACGACGTGGTTCGGAGACGGAACAGAGAATCGG
AAACGCTTCTACACTGTCGGTGAACCGGCGAGAGAGAGTGAAAACGAAGC
TGAAAGCTCTGGAAGTGCTCTTGTCCACCGCAGGGCCGCAAGAACCGCTG
GCAGAAGAAAACAGCGATGATAGCGATGGCGGTGGTAAGGGTCGGGCTAT
CGCCGGCAGTGGAGGCGATGGCAGTAGCCTGGGCCTACTGCGCAGTCATA
GCCCTATGGACGAGAACGTGGACGTTGGCTCTGGCGTCCGTACCGATGCT
GTTCTCACTGATACCAGTCACTCCAAGGAGAGAACAGCTTCCTCGCAAAA
GGTCAGATCTCGTCGGTAAAGGCGGCAGCATTGAGGACGACCCCTTCAAT
ACCTACACCGAAGATAACCCAACCCGACTACGTGCGCTACAGAAGTTCGG
TCTCGACCTCGGACGGGTCATGAAGGTGACGAAATCCCATGCATACGATG
AGAAAACTACCGGTACTTCACCGATGGACGACGAGGGACCGGGTACAAGC
GGGAAGAACTATGACGGTATTGCGGAGGGCGGGACACTACACAGACGTAC
CAAACGATGTCGACGACGTGGTTCGGAGACGGAACAGAGAATCGGAAACG
CTTCTACACTGTCGGTGAACCGGCGAGAGAGAGTGAAAACGAAGCTGAAA
GCTCTGGAAGTGCTCTTGTCCACCGCAGGGCCGCAAGAACCGCTGGCAGA
AGAAAACAGCGATGATAGCGATGGCGGTGGTAAGGGTCGGGCTATCGCCG
GCAGTGGAGGCGATGGCAGTAGCCTGGGCCTACTGCGCAGTCATAGCCCT
ATGGACGAGAACGTGGACGTTGGCTCTGGCGTCCGTACCGATGCTGTTCT
CACTGATACCAGTCACTCCAAGGAGAGAACAGCTTCCTCGCAAAAG
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