mRNA_H-paniculata_contig2295.6145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2295.6145.1
Unique NamemRNA_H-paniculata_contig2295.6145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2295.6145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2295contigH-paniculata_contig2295:15166..15968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size801
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.198487-UTR-H-paniculata_contig2295:15165..151671622929642.198487-UTR-H-paniculata_contig2295:15165..15167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2295 15166..15167 +
1691480947.8819335-UTR-H-paniculata_contig2295:15165..151671691480947.8819335-UTR-H-paniculata_contig2295:15165..15167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2295 15166..15167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.2326207-CDS-H-paniculata_contig2295:15167..159681622929642.2326207-CDS-H-paniculata_contig2295:15167..15968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 15168..15968 +
1691480947.8918211-CDS-H-paniculata_contig2295:15167..159681691480947.8918211-CDS-H-paniculata_contig2295:15167..15968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 15168..15968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2295.6145.1prot_H-paniculata_contig2295.6145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2295 15168..15968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2295.6145.1

>prot_H-paniculata_contig2295.6145.1 ID=prot_H-paniculata_contig2295.6145.1|Name=mRNA_H-paniculata_contig2295.6145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
MDTPTVHERSNDNDTPQRPSDDGGVGGLLQGGDSSPTPIEATGVDLELSA
HDERVELGKEEHQYEDNTPEDMHNDAEQWRLAHTANRGLPSHKPCWWWVN
LLPPGGANGVCIPDTVIVDDTPSPRISGNTVTRNAETLPVLVNVSGVESS
ATLTRENCEISSSSLFSSISGANNPGYGSTSAAFAAAAAPAKGGSGGRRR
ALIWTFFQPVIPNDNAEKPGGGTTGFPSRRRGVLDDDAAADDAGDRSNVS
LDVTETTSAVTLSPPTA
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mRNA from alignment at H-paniculata_contig2295:15166..15968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2295.6145.1 ID=mRNA_H-paniculata_contig2295.6145.1|Name=mRNA_H-paniculata_contig2295.6145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=803bp|location=Sequence derived from alignment at H-paniculata_contig2295:15166..15968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGGACACTCCAACCGTTCACGAGAGAAGCAACGACAATGATACGCCC
CAACGCCCCAGCGACGACGGCGGGGTGGGAGGATTACTGCAGGGGGGAGA
TAGCAGTCCCACCCCGATCGAAGCTACTGGGGTTGACTTGGAGCTCAGTG
CGCATGACGAACGAGTCGAACTCGGGAAAGAGGAACATCAATATGAGGAT
AATACTCCGGAAGATATGCACAATGATGCTGAGCAATGGAGGCTGGCTCA
TACGGCTAATAGGGGTCTTCCAAGCCATAAGCCGTGCTGGTGGTGGGTGA
ATCTCCTGCCACCGGGCGGTGCTAACGGGGTCTGCATTCCTGACACCGTA
ATAGTAGATGACACTCCGTCCCCACGTATATCAGGAAACACAGTCACGAG
AAACGCAGAGACGCTCCCTGTTTTGGTCAACGTTAGTGGTGTTGAATCCT
CAGCGACGTTAACGCGGGAAAATTGTGAGATATCGTCCTCGTCATTGTTT
TCTAGCATAAGCGGGGCGAACAACCCTGGATATGGCTCTACTAGCGCGGC
GTTTGCAGCAGCTGCTGCTCCTGCTAAAGGTGGCAGTGGCGGTCGAAGGC
GAGCTTTGATATGGACCTTCTTTCAACCGGTGATACCAAATGACAATGCC
GAGAAACCCGGGGGTGGAACCACGGGATTTCCATCTCGACGAAGAGGGGT
GCTCGACGATGATGCCGCCGCCGATGATGCTGGGGATAGATCTAATGTAT
CTCTTGACGTAACAGAAACAACATCCGCCGTGACATTATCACCACCAACA
GCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2295:15166..15968+

>mRNA_H-paniculata_contig2295.6145.1 ID=mRNA_H-paniculata_contig2295.6145.1|Name=mRNA_H-paniculata_contig2295.6145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig2295:15166..15968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACACTCCAACCGTTCACGAGAGAAGCAACGACAATGATACGCCCCA
ACGCCCCAGCGACGACGGCGGGGTGGGAGGATTACTGCAGGGGGGAGATA
GCAGTCCCACCCCGATCGAAGCTACTGGGGTTGACTTGGAGCTCAGTGCG
CATGACGAACGAGTCGAACTCGGGAAAGAGGAACATCAATATGAGGATAA
TACTCCGGAAGATATGCACAATGATGCTGAGCAATGGAGGCTGGCTCATA
CGGCTAATAGGGGTCTTCCAAGCCATAAGCCGTGCTGGTGGTGGGTGAAT
CTCCTGCCACCGGGCGGTGCTAACGGGGTCTGCATTCCTGACACCGTAAT
AGTAGATGACACTCCGTCCCCACGTATATCAGGAAACACAGTCACGAGAA
ACGCAGAGACGCTCCCTGTTTTGGTCAACGTTAGTGGTGTTGAATCCTCA
GCGACGTTAACGCGGGAAAATTGTGAGATATCGTCCTCGTCATTGTTTTC
TAGCATAAGCGGGGCGAACAACCCTGGATATGGCTCTACTAGCGCGGCGT
TTGCAGCAGCTGCTGCTCCTGCTAAAGGTGGCAGTGGCGGTCGAAGGCGA
GCTTTGATATGGACCTTCTTTCAACCGGTGATACCAAATGACAATGCCGA
GAAACCCGGGGGTGGAACCACGGGATTTCCATCTCGACGAAGAGGGGTGC
TCGACGATGATGCCGCCGCCGATGATGCTGGGGATAGATCTAATGTATCT
CTTGACGTAACAGAAACAACATCCGCCGTGACATTATCACCACCAACAGC
AATGGACACTCCAACCGTTCACGAGAGAAGCAACGACAATGATACGCCCC
AACGCCCCAGCGACGACGGCGGGGTGGGAGGATTACTGCAGGGGGGAGAT
AGCAGTCCCACCCCGATCGAAGCTACTGGGGTTGACTTGGAGCTCAGTGC
GCATGACGAACGAGTCGAACTCGGGAAAGAGGAACATCAATATGAGGATA
ATACTCCGGAAGATATGCACAATGATGCTGAGCAATGGAGGCTGGCTCAT
ACGGCTAATAGGGGTCTTCCAAGCCATAAGCCGTGCTGGTGGTGGGTGAA
TCTCCTGCCACCGGGCGGTGCTAACGGGGTCTGCATTCCTGACACCGTAA
TAGTAGATGACACTCCGTCCCCACGTATATCAGGAAACACAGTCACGAGA
AACGCAGAGACGCTCCCTGTTTTGGTCAACGTTAGTGGTGTTGAATCCTC
AGCGACGTTAACGCGGGAAAATTGTGAGATATCGTCCTCGTCATTGTTTT
CTAGCATAAGCGGGGCGAACAACCCTGGATATGGCTCTACTAGCGCGGCG
TTTGCAGCAGCTGCTGCTCCTGCTAAAGGTGGCAGTGGCGGTCGAAGGCG
AGCTTTGATATGGACCTTCTTTCAACCGGTGATACCAAATGACAATGCCG
AGAAACCCGGGGGTGGAACCACGGGATTTCCATCTCGACGAAGAGGGGTG
CTCGACGATGATGCCGCCGCCGATGATGCTGGGGATAGATCTAATGTATC
TCTTGACGTAACAGAAACAACATCCGCCGTGACATTATCACCACCAACAG
CA
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