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Homology
BLAST of mRNA_H-paniculata_contig2295.6146.1 vs. uniprot
Match: D8LPR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPR4_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 2.990e-16 Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 3
Query: 417 IDQLAKILRAAYDPTLQRLWADWAVDELNGHWHLVEVHGLKTDADLRNAVMAKA 578
+++L +LR AYDPTLQRLWADWAV E NG W+LVEVHG+KT+ADLRNA AKA
Sbjct: 1 MEKLTTVLRKAYDPTLQRLWADWAVHEDNGQWYLVEVHGVKTEADLRNAAAAKA 54
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 605 |
| Cds size | 417 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2295.6146.1 >prot_H-paniculata_contig2295.6146.1 ID=prot_H-paniculata_contig2295.6146.1|Name=mRNA_H-paniculata_contig2295.6146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MNGKAKTKENARDPTHGLGWPSSRAAYQKRAPRQGLSVLPPALAHGLMVI
EVQWFWGLLQLGFWEEAGRRAGVEANDRSSTGRFSIERRGQQQAGGGSAY
GGLRADTLMRGSIKIDFAFRSCGRGRRVCGGGGGEIED* back to topmRNA from alignment at H-paniculata_contig2295:16314..19442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2295.6146.1 ID=mRNA_H-paniculata_contig2295.6146.1|Name=mRNA_H-paniculata_contig2295.6146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3129bp|location=Sequence derived from alignment at H-paniculata_contig2295:16314..19442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATATGAATGGGAAGGCAAAGACGAAGGAAAACGCAAGAGATCCCACCC
ACGGGTTAGGGTGGTGAGAGTTTAACCGCTCTGTTTTTCGACGTCAATAT
GTAGTGCATTTTCCAAGGATTAATGCTTCGTGTTTCGTCTGGCTAGTATG
TGAGGTACTGATGGTGTATTGATCATAAAGTCGGCGAACGTGTCCTGGCC
ATTGATCGTACTGTATGCCTTGGTTGTGTAGCATTATTTCCGAAGACTCT
CAGATAGAACAAATCCACGACGCTTTATCGCGGACTCGCCGCTGCGAGCG
CGCTCCAAAAACATCTCATTTTGTTCGAGTTGCGTAAGGAAGGCATACCA
GAATTTCTGGTGCGACAAAATCACACACAGAACCAAAACAGCTCCAAACC
CGGCGATAGCATCAATACCATCCACGCACCTTATACTTCGGCAGGCAGGC
AGCAATCCATAATACCTCTTCGCTGTTACAACACAACCTCTTGCCCACAA
CAGTTTTGATAAAGCACTCCTTTGAACCGTCCCACACATAGGTGGCACTT
TGGACAGAGATAGAGGTGATCGATGCCTTGAGAGAGATGTCCAAGGGTAG
ATGGGGCGGCAGCAACAACAGTCGAGTACATCAGCCTCGCGACGTTGGTG
GCACCGTCGAACCCACCGGAAGCTCAAAAAATAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAATAA
CAGCAACAACAACAGTGGTCTCGGCGGCGAATCAAATCCCTGCTGCTGCT
GTTGCATACAGGCCTTCGTCAAGAGCTGCATATCAAAAGCGAGCACCGCG
GCAGGGGCTATCGGTTCTGCCGCCAGCCCTAGCCCATGGCTTAATGGTGA
TCGAGGTGCAGTGGTTTTGGGGGCTGCTGCAGTTGGGTTTTTGGGAAGAA
GCAGGGCGAAGAGCAGGAGTGGAAGCAAACGACCGGAGCTCGACCGGCCG
GTTTTCTATCGAGCGGCGTGGACAACAACAGGCGGGGGGAGGGTCAGCGT
ATGGAGGATTGAGAGCAGGTGAGGGATGCTCGGTGGTAGCGGGGGGTAAC
AATACCCTGCAGTGTGCCTTAGTTTATGTTGAAACCTCCTCAACATATAC
AGGAATTTGACTCACAAACTGTGAAGGGCGGTCGGCGGTGTCTCATTCGC
CGTTGCCTGAAGTTGCATGCGCACAAAGGCATTTTTTGCTGTTTCTCCAC
CCAACACAGCCTCTGGAACTCATTTTCGTTAAACCGTGTGAGAAGCCGCT
AAAATGCACGTCAGTACCTTACTTGTCGCGACATCGCGCCTCCGTTCGGC
GAAAGGTTTGAATTATGTACACCGGAAGATAAACACAGCAGTCTGATTCC
TTGTTTCGAAATGTTGATGAATATTCGTGTGTTGTGCTAATCTCTCAGAT
ACCCTTATGTTTCCGATCTTGCGGCACACCTCTGCACATTGTCTGGGGGA
GGCGGGGCAGCATCAAGATCGATTTCGCCTTTCGTAGCTGTGGTAGAGGA
AGAAGGGTGTGCGGCGGCGGCGGAGGCGAAATCGAAGATTGACCAACTCG
CCAAGGTACCACAGTCGTTGCCCAAATGCTGGCCCTAGCACTAGTCCTAT
ATTTAGCCCAGAAGCCGTGTGCACAAAGCGTCAAAGAGCGTGCTTGTTCG
ATTACACCTGGTATAGCAGCTCCATACTGATGAACTGCTATCCAACAGAG
TTCCACAAGTGCGAGCACTAGAATGCGAGTGTTTACCCAACCATTCAGAA
AACCTCAACTATCCTTCAAAACGGGACAGCTATGGGGTCGTCGCAGCGCT
ACTTTTATTAGCGCCGCCGTGTACAACGAGGCCGGGTCCATCAAAAAGAG
CAACAAATCTCTCTCGGGGACTACCAACACCTGAAAGATTCTCGGTGCCG
AGGAGATATCAGCAGGAAACGTGAAAACGACAGCAACAACAACAACGACA
ACAACAATGACAACAGCAGAATCCAGTATCTATACCCCCACTATAATCCA
TGGACCGTGCTGCCATATCGTAGGGGGACGTTACACAATGAAATGCCCTG
TGTTCACATCTGCCGGCGTAACAGGAAATGTTGAGACACGGCTAGCCCCT
TCTATATTCACGCTGCCTTATTCGCAGGGGGGGATATGCCTTGTCAACAG
ACACGAAAATTCCTCGCTACACCTACCTAGAAGTATTTACTTGCAAAAAC
ACATTGGTTCATGTGCCTTGCTATCTGATGATGATGTTCTACATCTTTGT
TATATGCAAAACAAGATATTGCGAGCGGCGTATGACCCGACTCTTCAGCG
GCTGTGGGCCGACTGGGCCGTGGACGAGCTCAACGGGCACTGGCATTTAG
TCGAGGTAAGTAATGAACTACAACGCTGGCGAACAAGAGCATCGCACGTA
CAGAGTTGATTTTGTGGAGGCCCCGCACTGCACTTGTTCTTGGTGTCCTA
GTTGTTCGAGTTTGCCGTAGGGCGACGCTACAAGACAAGATAACTAACGA
ATGGTTGACATTAATCGGAAAATTGTCGACAATGGTCAGTACATACTCCG
GAGTTTGTATAATATGGTCGACTTTTGTGCGCAGGTTGGCATCTATTTAC
GACAACCACCTTTAGAAAATTGCTATTAATGTCGGCAGTGCAGCGTGCTA
TACTGTACTGGAAGGTTGTAAGGCTGAACGTAAGGTGCAGTAGAGCAACT
CTGTATCATACTGTGCTATCAGGTTCCAAGGTCACACGTGAAAAGCGAAT
GACCGTCTTGTTGGTTCTCACCAAATGGAACCCCGTTTTCACACTTCTCA
CTGATTCCACCCGACGCGGGATTGAATTCAATAACATGTTGCTACAACGT
TCCGGACTACAAAATAGCATGTGAATATTTACGTTGTGAGCTAAAATGAA
AATACCCAAAAAAGTGCACAGATTTTACTAGTTTTCCATTGTAAACAAAT
ACATACGTTTGTAGATTCAATGAATTAACAATGTGTTCCGTTTTGTAGGT
TCACGGACTGAAAACAGATGCGGACTTGCGGAATGCGGTGATGGCAAAGG
CGGGGATTGTCACTGCTCAGGATAAGCAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2295:16314..19442+ >mRNA_H-paniculata_contig2295.6146.1 ID=mRNA_H-paniculata_contig2295.6146.1|Name=mRNA_H-paniculata_contig2295.6146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig2295:16314..19442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGGGAAGGCAAAGACGAAGGAAAACGCAAGAGATCCCACCCACGG
GTTAGGGTGATGAATGGGAAGGCAAAGACGAAGGAAAACGCAAGAGATCC
CACCCACGGGTTAGGGTGGCCTTCGTCAAGAGCTGCATATCAAAAGCGAG
CACCGCGGCAGGGGCTATCGGTTCTGCCGCCAGCCCTAGCCCATGGCTTA
ATGGTGATCGAGGTGCAGTGGTTTTGGGGGCTGCTGCAGTTGGGTTTTTG
GGAAGAAGCAGGGCGAAGAGCAGGAGTGGAAGCAAACGACCGGAGCTCGA
CCGGCCGGTTTTCTATCGAGCGGCGTGGACAACAACAGGCGGGGGGAGGG
TCAGCGTATGGAGGATTGAGAGCAGGCCTTCGTCAAGAGCTGCATATCAA
AAGCGAGCACCGCGGCAGGGGCTATCGGTTCTGCCGCCAGCCCTAGCCCA
TGGCTTAATGGTGATCGAGGTGCAGTGGTTTTGGGGGCTGCTGCAGTTGG
GTTTTTGGGAAGAAGCAGGGCGAAGAGCAGGAGTGGAAGCAAACGACCGG
AGCTCGACCGGCCGGTTTTCTATCGAGCGGCGTGGACAACAACAGGCGGG
GGGAGGGTCAGCGTATGGAGGATTGAGAGCAGATACCCTTATATACCCTT
ATGCGGGGCAGCATCAAGATCGATTTCGCCTTTCGTAGCTGTGGTAGAGG
AAGAAGGGTGTGCGGCGGCGGCGGAGGCGAAATCGAAGATTGAGCGGGGC
AGCATCAAGATCGATTTCGCCTTTCGTAGCTGTGGTAGAGGAAGAAGGGT
GTGCGGCGGCGGCGGAGGCGAAATCGAAGATTGA back to top
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