mRNA_H-paniculata_contig2295.6143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2295.6143.1
Unique NamemRNA_H-paniculata_contig2295.6143.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2295.6143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2295contigH-paniculata_contig2295:10185..10871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.9129457-CDS-H-paniculata_contig2295:10184..103671622929641.9129457-CDS-H-paniculata_contig2295:10184..10367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 10185..10367 +
1691480947.7961044-CDS-H-paniculata_contig2295:10184..103671691480947.7961044-CDS-H-paniculata_contig2295:10184..10367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 10185..10367 +
1622929641.9256246-CDS-H-paniculata_contig2295:10837..108701622929641.9256246-CDS-H-paniculata_contig2295:10837..10870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 10838..10870 +
1691480947.806874-CDS-H-paniculata_contig2295:10837..108701691480947.806874-CDS-H-paniculata_contig2295:10837..10870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2295 10838..10870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2295.6143.1prot_H-paniculata_contig2295.6143.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2295 10185..10870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2295.6143.1

>prot_H-paniculata_contig2295.6143.1 ID=prot_H-paniculata_contig2295.6143.1|Name=mRNA_H-paniculata_contig2295.6143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
LAVQSATDSAAVPCCTFQATKARHGPRKCSVTQRDCSLPLFSQHWTTVLE
DDTSISNHVKKQRCRFSAKRGM
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mRNA from alignment at H-paniculata_contig2295:10185..10871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2295.6143.1 ID=mRNA_H-paniculata_contig2295.6143.1|Name=mRNA_H-paniculata_contig2295.6143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at H-paniculata_contig2295:10185..10871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGCAGTTCAGTCCGCTACAGACAGTGCCGCTGTGCCATGCTGTACCTT
TCAAGCTACTAAAGCAAGGCACGGGCCAAGAAAGTGCTCAGTGACCCAAC
GTGACTGCTCTCTACCGCTATTCTCACAGCACTGGACTACTGTACTTGAA
GATGACACAAGCATCTCAAATCATGTCAAAAAGGTAGTGATGTCACATCT
CTAACAACAGTAGACAATAGTCTTTGGGGCGCACCTTGCGTGTAGCTTTT
TTTCCGCACGATTTATAAGTGAGCAAGTAGGTTGCCCGACGAGTAGAACT
CACCTCGGGTGCTGTCTATCAGTTGATGTCGCGTGAAGCTGGGCTTAGTT
CAGTTGCGCGGGGAGGAATTGTTCCGAAAATTCCACCTACGTGGAAAATG
TCTAAATGGATTACTGTACAATAATGCCGTTGAAACGATAAAGTCTACTT
TGACGACATCTTGAGGACTTCTAGATTTCCAAACCCAATGTACATATCAT
TAATGGGTTGTTGTAGATATCGAGGTGATTTGATACCGTCCTGAACAGCT
GAAGGCACATATGGAAACTTGTCGAGAAAACATGTAGCACTAAATCAAGG
CACTGCTGCCATCCCACCGCGCCTGCAACCAACCGTGCCATGAACGTGCA
CAGCAGCGGTGCCGATTCTCGGCCAAGAGAGGTATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2295:10185..10871+

>mRNA_H-paniculata_contig2295.6143.1 ID=mRNA_H-paniculata_contig2295.6143.1|Name=mRNA_H-paniculata_contig2295.6143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig2295:10185..10871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGCAGTTCAGTCCGCTACAGACAGTGCCGCTGTGCCATGCTGTACCTT
TCAAGCTACTAAAGCAAGGCACGGGCCAAGAAAGTGCTCAGTGACCCAAC
GTGACTGCTCTCTACCGCTATTCTCACAGCACTGGACTACTGTACTTGAA
GATGACACAAGCATCTCAAATCATGTCAAAAAGTTAGCAGTTCAGTCCGC
TACAGACAGTGCCGCTGTGCCATGCTGTACCTTTCAAGCTACTAAAGCAA
GGCACGGGCCAAGAAAGTGCTCAGTGACCCAACGTGACTGCTCTCTACCG
CTATTCTCACAGCACTGGACTACTGTACTTGAAGATGACACAAGCATCTC
AAATCATGTCAAAAAGCAGCGGTGCCGATTCTCGGCCAAGAGAGGTATGC
AGCGGTGCCGATTCTCGGCCAAGAGAGGTATG
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