mRNA_H-paniculata_contig22949.6142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22949.6142.1
Unique NamemRNA_H-paniculata_contig22949.6142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22949.6142.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.570e-15
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 DVPTKQFILSLDARLPCVVSDLDDTHVFVKKASVKEIQ 114
            DVPTKQFI+SLDARL CVVSDLD THVFVKK SVKEIQ
Sbjct:   16 DVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQ 53
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BLAST of mRNA_H-paniculata_contig22949.6142.1 vs. uniprot
Match: UPI000DD144A2 (TFIIH basal transcription factor complex TTD-A subunit n=1 Tax=Malassezia restricta TaxID=76775 RepID=UPI000DD144A2)

HSP 1 Score: 48.5 bits (114), Expect = 1.690e-6
Identity = 18/38 (47.37%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 DVPTKQFILSLDARLPCVVSDLDDTHVFVKKASVKEIQ 114
            DV  KQ IL++D R+PC++ DLDDTH+ V    V++++
Sbjct:   12 DVAVKQMILAIDERMPCIIMDLDDTHMLVNSKMVEQLR 49
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BLAST of mRNA_H-paniculata_contig22949.6142.1 vs. uniprot
Match: A0A1M8ABE0_MALS4 (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8ABE0_MALS4)

HSP 1 Score: 46.6 bits (109), Expect = 9.780e-6
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 DVPTKQFILSLDARLPCVVSDLDDTHVFVKKASVKEIQ 114
            DV  KQ ILS+D  +PC+V DLD+THV V    V +++
Sbjct:   12 DVAVKQMILSIDEHMPCIVMDLDETHVLVNTTLVDQLR 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22949.6142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G710_ECTSI5.570e-1589.47General transcription and DNA repair factor IIH su... [more]
UPI000DD144A21.690e-647.37TFIIH basal transcription factor complex TTD-A sub... [more]
A0A1M8ABE0_MALS49.780e-650.00General transcription and DNA repair factor IIH su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22949contigH-paniculata_contig22949:3067..3183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTFIIH subunit TTDA/Tfb5
Ec32 orthologEc-01_011510.1
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.881632-CDS-H-paniculata_contig22949:3066..31831622929641.881632-CDS-H-paniculata_contig22949:3066..3183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22949 3067..3183 -
1691480947.784223-CDS-H-paniculata_contig22949:3066..31831691480947.784223-CDS-H-paniculata_contig22949:3066..3183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22949 3067..3183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22949.6142.1prot_H-paniculata_contig22949.6142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22949 3067..3183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22949.6142.1

>prot_H-paniculata_contig22949.6142.1 ID=prot_H-paniculata_contig22949.6142.1|Name=mRNA_H-paniculata_contig22949.6142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
DVPTKQFILSLDARLPCVVSDLDDTHVFVKKASVKEIQ*
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mRNA from alignment at H-paniculata_contig22949:3067..3183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22949.6142.1 ID=mRNA_H-paniculata_contig22949.6142.1|Name=mRNA_H-paniculata_contig22949.6142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig22949:3067..3183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGCCAACGAAGCAGTTCATCCTCAGTCTCGACGCTCGCCTGCCATG
CGTGGTTTCGGACCTCGATGATACACACGTGTTCGTCAAAAAGGCCAGCG
TGAAGGAAATACAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22949:3067..3183-

>mRNA_H-paniculata_contig22949.6142.1 ID=mRNA_H-paniculata_contig22949.6142.1|Name=mRNA_H-paniculata_contig22949.6142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig22949:3067..3183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGCCAACGAAGCAGTTCATCCTCAGTCTCGACGCTCGCCTGCCATG
CGTGGTTTCGGACCTCGATGATACACACGTGTTCGTCAAAAAGGCCAGCG
TGAAGGAAATACAGTAAGACGTGCCAACGAAGCAGTTCATCCTCAGTCTC
GACGCTCGCCTGCCATGCGTGGTTTCGGACCTCGATGATACACACGTGTT
CGTCAAAAAGGCCAGCGTGAAGGAAATACAGTAA
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