mRNA_H-paniculata_contig22934.6137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22934.6137.1
Unique NamemRNA_H-paniculata_contig22934.6137.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22934.6137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22934contigH-paniculata_contig22934:137..2094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size662
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.2769094-CDS-H-paniculata_contig22934:136..1831622929641.2769094-CDS-H-paniculata_contig22934:136..183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22934 137..183 +
1691480947.5600471-CDS-H-paniculata_contig22934:136..1831691480947.5600471-CDS-H-paniculata_contig22934:136..183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22934 137..183 +
1622929641.2954729-CDS-H-paniculata_contig22934:1481..20941622929641.2954729-CDS-H-paniculata_contig22934:1481..2094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22934 1482..2094 +
1691480947.5681322-CDS-H-paniculata_contig22934:1481..20941691480947.5681322-CDS-H-paniculata_contig22934:1481..2094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22934 1482..2094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22934.6137.1prot_H-paniculata_contig22934.6137.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22934 137..2094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22934.6137.1

>prot_H-paniculata_contig22934.6137.1 ID=prot_H-paniculata_contig22934.6137.1|Name=mRNA_H-paniculata_contig22934.6137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
GGGGKRDGGGATSINRLPQGQHRQLWNPDGGGLVPPTPPSHQQTPNRNND
PPATRNNDATPNRNSNNPTPNPNNSPHFSYHGLSPLQGAMMAPRGGGAVR
GGRGVGHGGRGGGRGGRVQYWRGSPVSQGGGAMMLPHTGGVGGSLQQQNH
HNQQQQQQQQQQQQQQQQQQQQQPGYHQRLQALPSVHPSHSHGRDRGHGH
GQGEAPMQVPVATRGRGGGG
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mRNA from alignment at H-paniculata_contig22934:137..2094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22934.6137.1 ID=mRNA_H-paniculata_contig22934.6137.1|Name=mRNA_H-paniculata_contig22934.6137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1958bp|location=Sequence derived from alignment at H-paniculata_contig22934:137..2094+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGGCGGTAAGAGAGACGGTGGAGGAGCCACCAGCATCAATCGGTG
AGAGGAGGGTGTACTTGGGCTGTACCATCGAAAGATGATATTATTTCCCC
GCTTACGGTAGGGTACCCGACTTGGCCGTAAAATACCAAGATATTCTGGA
CTAAGTGCAGGCATTTTGTCCTGATTTTCCCTTTGCTCCAACCCTTTATG
ATTGAGAACGGGACTTGGTACCGGCCAAATTATGGTTACATTTGATAACG
ACTAGCCATGAAGAAGGACGAACACGGTGTCTCAAGGTCTAACTAGCACA
GGACAACTGGTTGGTTCATCTTGAATGCGATAGGAAGTACGTTTTACGTC
GCACTCACAACCCAAAGGGGTTATAATTAGGTCAATTTGTGAATGCGTCG
CTCGAAAGGATTGAAAACCCCGAACATGCAATTCCTTTACCTCACTATTT
GGTTGACAGATATGCTATCCGTGTACGGTAGGTAGTATGTGGTTCATCCG
TTACCGTCACTTTTTTCTATTCTTCCGTTATACCCCTTCCGTTTGTTCAG
TTTGTGGATAATAACGTAGCAACCAAGTAACCAGCAGGTTGAAGATGCTG
AGCATACCTCCATTCTTTTTTATGGTCATCATGTTTTCTACAGTCAGTTA
TGCATATCTACTTCTACTTTAAACTTGCTCTACGCTATGGTACTCTTACA
GACCCTATCATAATTCCTAAATTGGTTTACTTTGTGGATAATAACCAAGT
AATCCAGCAGCTCGCAGATGCTGAGCGTGTCTCCGTTTCGTTTTACAATT
ATTCTTGTGTTTTCTGATATACAAACAGTAGTTTGTGCGTGCTATCTCCG
TGTACGTATGACTCTCTATTTGCTCTATGATAGTTTTTCTAGACTGTCTT
GTCATATTGTAGTGTAGATGTCGTCCTGCTGAGGAAGCTGTCCTTGACCA
TTGATGCGTGTGGTGATGTCGCCATCTGGTAGTTGGTGTTGGAGCTCTTC
TCTCTCGAGGATGGGTGGTCAATGGTCTCGAAATGCTGAAACACGCTAAA
CATGACGGACCCTGTCATCGACATTAAAATACCGGCATTTCCTTTTGCCA
CGAGGGACCTTGATGGTAATAACTCCCGATTTTACTGTATACAGTTATCG
GGGTGTATCTGTTACTTGAATTGATTTAGTTTGTCGGTACACTCTAGGTT
GCAGGGGATCTCTGTTTACCGTATCATTATTTCGTGCGATATCTCTGAGT
TCATACTGGCTTACAGGGTGTATCTGTTTGCCGGTTTCCTCTATTGCTGT
TTCTTGTCTTGTCTTGTCTTGTCTTGTCTTTGTTTGCAACCGAAGGCTAC
CTCAAGGGCAACACCGGCAGCTATGGAACCCCGATGGCGGGGGACTAGTA
CCCCCTACCCCCCCTTCCCACCAGCAAACTCCGAACCGAAACAACGATCC
GCCTGCGACTCGGAACAATGATGCAACTCCCAACCGGAACAGCAACAATC
CGACTCCGAACCCGAACAACAGCCCTCATTTCTCATACCACGGCCTAAGC
CCCCTGCAAGGTGCGATGATGGCGCCGCGCGGTGGTGGGGCTGTCCGAGG
CGGCCGCGGTGTTGGACACGGGGGGCGAGGTGGGGGACGAGGAGGCAGAG
TCCAGTATTGGCGCGGTTCTCCCGTGTCTCAAGGTGGTGGTGCGATGATG
CTGCCGCACACTGGTGGGGTTGGCGGGTCGCTTCAGCAACAAAATCATCA
TAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAAC
AACAGCAACAGCAACAGCCTGGTTATCATCAGCGTCTTCAGGCGTTGCCT
TCGGTTCATCCAAGTCATAGTCATGGTCGTGATCGTGGTCATGGTCATGG
GCAGGGGGAAGCACCGATGCAAGTCCCGGTGGCGACACGAGGGAGGGGTG
GAGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig22934:137..2094+

>mRNA_H-paniculata_contig22934.6137.1 ID=mRNA_H-paniculata_contig22934.6137.1|Name=mRNA_H-paniculata_contig22934.6137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig22934:137..2094+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGGCGGTAAGAGAGACGGTGGAGGAGCCACCAGCATCAATCGGGG
GGAGGCGGTAAGAGAGACGGTGGAGGAGCCACCAGCATCAATCGGCTACC
TCAAGGGCAACACCGGCAGCTATGGAACCCCGATGGCGGGGGACTAGTAC
CCCCTACCCCCCCTTCCCACCAGCAAACTCCGAACCGAAACAACGATCCG
CCTGCGACTCGGAACAATGATGCAACTCCCAACCGGAACAGCAACAATCC
GACTCCGAACCCGAACAACAGCCCTCATTTCTCATACCACGGCCTAAGCC
CCCTGCAAGGTGCGATGATGGCGCCGCGCGGTGGTGGGGCTGTCCGAGGC
GGCCGCGGTGTTGGACACGGGGGGCGAGGTGGGGGACGAGGAGGCAGAGT
CCAGTATTGGCGCGGTTCTCCCGTGTCTCAAGGTGGTGGTGCGATGATGC
TGCCGCACACTGGTGGGGTTGGCGGGTCGCTTCAGCAACAAAATCATCAT
AATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACA
ACAGCAACAGCAACAGCCTGGTTATCATCAGCGTCTTCAGGCGTTGCCTT
CGGTTCATCCAAGTCATAGTCATGGTCGTGATCGTGGTCATGGTCATGGG
CAGGGGGAAGCACCGATGCAAGTCCCGGTGGCGACACGAGGGAGGGGTGG
AGGGGGGGCTACCTCAAGGGCAACACCGGCAGCTATGGAACCCCGATGGC
GGGGGACTAGTACCCCCTACCCCCCCTTCCCACCAGCAAACTCCGAACCG
AAACAACGATCCGCCTGCGACTCGGAACAATGATGCAACTCCCAACCGGA
ACAGCAACAATCCGACTCCGAACCCGAACAACAGCCCTCATTTCTCATAC
CACGGCCTAAGCCCCCTGCAAGGTGCGATGATGGCGCCGCGCGGTGGTGG
GGCTGTCCGAGGCGGCCGCGGTGTTGGACACGGGGGGCGAGGTGGGGGAC
GAGGAGGCAGAGTCCAGTATTGGCGCGGTTCTCCCGTGTCTCAAGGTGGT
GGTGCGATGATGCTGCCGCACACTGGTGGGGTTGGCGGGTCGCTTCAGCA
ACAAAATCATCATAATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAC
AACAACAACAACAACAGCAACAGCAACAGCCTGGTTATCATCAGCGTCTT
CAGGCGTTGCCTTCGGTTCATCCAAGTCATAGTCATGGTCGTGATCGTGG
TCATGGTCATGGGCAGGGGGAAGCACCGATGCAAGTCCCGGTGGCGACAC
GAGGGAGGGGTGGAGGGGGG
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