mRNA_H-paniculata_contig2293.6136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A6H5JNP1_9PHAE (ENDO3c domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP1_9PHAE) HSP 1 Score: 403 bits (1035), Expect = 7.650e-130 Identity = 198/253 (78.26%), Postives = 220/253 (86.96%), Query Frame = 1
Query: 901 PTLMAKVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSWVKKTGPNAPKTLSEIDSLQEVLASSTLPQKSSKNAIVYSERHLELEQVR 1659
P L K LIIQ+MD LYPDPPIPINH D FTLLCGVLLSAQTTDAQVNLVT+ELF VAP+P S+S+M+QE+LQQIIRSVGLAPTKAKHLIALSQQ+LDRFDG VP TF+GLQSLPGVGRKTA+VVM QAF FPVDTHIHRLALRW LTKNEKNA+KVEEDLM FPR SW+KLHLQFIYFGREHCQAR+H+A+ CP+CSWVKKTGP +PK L+E+ L + LAS T +KSSKNAIVYSER LE+EQ R
Sbjct: 308 PRLAEKAALIIQIMDKLYPDPPIPINHLDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAQEDLQQIIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWELTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALAELTCLNDYLASPTPTKKSSKNAIVYSERMLEMEQFR 560
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: D8LEA3_ECTSI (Putative endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA3_ECTSI) HSP 1 Score: 400 bits (1028), Expect = 1.680e-129 Identity = 195/253 (77.08%), Postives = 219/253 (86.56%), Query Frame = 1
Query: 901 PTLMAKVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSWVKKTGPNAPKTLSEIDSLQEVLASSTLPQKSSKNAIVYSERHLELEQVR 1659
P L K LIIQ+MD LYPDPPIPINH D FTLLCGVLLSAQTTDAQVNLVT+ELF VAP+P S+S+M+ E+LQ+ IRSVGLAPTKAKHLIALSQQ+LDRFDG VP TF+GLQSLPGVGRKTA+VVM QAF FPVDTHIHRLALRWGLTKNEKNA+KVEEDLM FPR SW+KLHLQFIYFGREHCQAR+H+A+ CP+CSWVKKTGP +PK L+++ L + LAS T +KSSKNAIVYSER LE+EQ R
Sbjct: 256 PRLAEKAALIIQIMDKLYPDPPIPINHMDSFTLLCGVLLSAQTTDAQVNLVTQELFRVAPNPQSLSKMAHEDLQRTIRSVGLAPTKAKHLIALSQQILDRFDGKVPQTFEGLQSLPGVGRKTAAVVMVQAFNTPAFPVDTHIHRLALRWGLTKNEKNASKVEEDLMAVFPRDSWAKLHLQFIYFGREHCQARVHDASACPICSWVKKTGPGSPKALAQLTCLNDYLASPTPTKKSSKNAIVYSERKLEMEQFR 508
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A835ZEQ0_9STRA (DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ0_9STRA) HSP 1 Score: 266 bits (680), Expect = 5.700e-81 Identity = 141/259 (54.44%), Postives = 175/259 (67.57%), Query Frame = 1
Query: 934 QVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSWVKKTGPNA---------------------PKTLSEIDSLQEVLASSTLPQKSSKNAIVYSERHLEL 1647
QV+D LYP+PP+P+NH D FTLLC VLLSAQTTD +VN VT ELF AP P +++ MS ++ IIR+VGLAPTKA+HLIA +QQL +RF G VP T + LQ+LPGVGRKTASVVMS AFG+ FPVDTHIHRLALRW L+++E N +VE DL +P ++ +LHLQFIYFGRE+CQAR H + CPVCSW P + P+ S D Q +L S P+K SK +++Y ER EL
Sbjct: 3 QVLDRLYPEPPMPLNHTDPFTLLCAVLLSAQTTDGKVNEVTTELFARAPTPRALAAMSHSDVLSIIRTVGLAPTKARHLIATAQQLCERFGGAVPRTMEELQTLPGVGRKTASVVMSGAFGVPAFPVDTHIHRLALRWRLSRSETNVERVEHDLRALWPPAAYGRLHLQFIYFGREYCQARNHMPSRCPVCSWADNPLPTSAPIAAARSKAHHAQQXXXXXRPQPASPDDIPQLLLES---PRKLSKTSVLYGERVAEL 258
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A2E4F9J2_9DELT (Endonuclease III n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E4F9J2_9DELT) HSP 1 Score: 246 bits (627), Expect = 5.920e-74 Identity = 116/192 (60.42%), Postives = 146/192 (76.04%), Query Frame = 1
Query: 937 VMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSW 1512
++D LYP+PPIP++H+D FTLL VLLSAQTTD +VN VT LFE P P M+ +S + ++ IR VGLAPTKAK++ AL+Q+L+D FD +VP+ L+SLPGVG KTASVVM QAFG+ FPVDTHIHRLA RWGL+ N KN + E DL FPR +W++ HLQ IYFGRE+C AR H+ +TCP+CSW
Sbjct: 13 MLDELYPEPPIPLDHRDSFTLLIAVLLSAQTTDKKVNEVTPALFEAGPTPQRMAALSVDVIRDHIRQVGLAPTKAKNIQALAQRLIDDFDAEVPADLAALESLPGVGHKTASVVMCQAFGVPAFPVDTHIHRLAARWGLS-NGKNVDTTERDLKRVFPRDTWNRRHLQIIYFGREYCPARHHDLSTCPICSW 203
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A2E8RYW3_9DELT (Endonuclease III n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E8RYW3_9DELT) HSP 1 Score: 246 bits (627), Expect = 7.710e-74 Identity = 114/199 (57.29%), Postives = 148/199 (74.37%), Query Frame = 1
Query: 916 KVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSW 1512
K + I+++++ L+P PIP+ H D FTLL V+LSAQTTD +VN VT LF+ APDP M+++ E +Q++IR +GLAP KA+ L LSQ L+D F+G VP+ F+ LQ LPGVGRKTA+V+M+QAFG FPVDTHIHRLA RWGL++ K A+ E+DL FPR+SW+KLHLQ I+FGR HC AR H CP+CSW
Sbjct: 6 KAIRIMEILEELFPTTPIPLTHTDPFTLLVAVVLSAQTTDKKVNQVTPSLFKQAPDPKRMAKLPVETIQELIREIGLAPQKARALKGLSQMLIDDFEGCVPADFEALQRLPGVGRKTANVIMAQAFGQPAFPVDTHIHRLAARWGLSRG-KTADHTEQDLRKIFPRESWNKLHLQIIFFGRSHCPARYHELEDCPICSW 203
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A3A5WA12_9ARCH (Endonuclease III n=2 Tax=Archaea TaxID=2157 RepID=A0A3A5WA12_9ARCH) HSP 1 Score: 244 bits (624), Expect = 1.690e-73 Identity = 112/199 (56.28%), Postives = 152/199 (76.38%), Query Frame = 1
Query: 916 KVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSW 1512
K +I+++++ YP+ P+P++H++ F LL VL+SAQTTD +VN VT ELF PD SMS++S E +Q IIR VGLAPTKA+++ LS+ L+D ++G +P+TF+GL+ LPGVG KTA VVM+QAFG+ FP+DTHIHRLA RWGL+ N N K E+DL FP++SW+KLHLQ I+FGRE+C AR H+ CP+CSW
Sbjct: 6 KASIILEMLEEYYPETPVPLDHENPFQLLVAVLMSAQTTDKKVNQVTPELFRQGPDAQSMSKLSPETIQGIIREVGLAPTKARNISKLSKILVDSYEGQIPNTFEGLEGLPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVVKTEKDLKAIFPKESWNKLHLQIIFFGREYCPARNHDLTKCPICSW 203
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A356FBE6_9BACT (Endonuclease III n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FBE6_9BACT) HSP 1 Score: 244 bits (623), Expect = 3.100e-73 Identity = 121/201 (60.20%), Postives = 145/201 (72.14%), Query Frame = 1
Query: 910 MAKVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSW 1512
+ K I ++D LY DPPIP++HKD +TLL VLLSAQTTD +VNLVT ELF AP P M +++ EE+ IIR+ GLAP KA+++ ALSQ LLD G VP+ + L++LPGVG KTASVVM QAF FPVDTHIHRLA RWGL+ N KN K E DL FPR+SW+KLHLQ IYFGREHC A H+ CP+CSW
Sbjct: 4 LEKAEKIHAILDELYEDPPIPLDHKDPYTLLVSVLLSAQTTDKRVNLVTPELFRRAPTPRKMVKLTVEEILAIIRTCGLAPGKARNIHALSQILLDEHGGRVPADMEKLEALPGVGHKTASVVMIQAFEQPAFPVDTHIHRLAARWGLS-NGKNVEKTERDLKAVFPRESWAKLHLQIIYFGREHCPALFHDLTECPICSW 203
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A2E6U7B1_9EURY (Endonuclease III n=13 Tax=Archaea TaxID=2157 RepID=A0A2E6U7B1_9EURY) HSP 1 Score: 242 bits (618), Expect = 1.580e-72 Identity = 111/199 (55.78%), Postives = 148/199 (74.37%), Query Frame = 1
Query: 916 KVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSW 1512
K + I ++D +YP+ P+P++H++ F LL VL+SAQTTD +VN VT LFE P P +M+ + + +Q +IR VGLAPTKAK++ LS+ LL+ DG VP+TF+ L++LPGVG KTA VVM+QAFG+ FP+DTHIHRLA RWGL+ N N + E DL FPR+SW+ LHLQ I+FGREHC AR H+ +TCP+CSW
Sbjct: 6 KAIRIKGMLDEMYPETPVPLDHRNPFELLIAVLMSAQTTDLKVNEVTPALFEAGPTPAAMAALDVDVIQSLIRYVGLAPTKAKNIKRLSEMLLEHHDGQVPATFEALEALPGVGHKTAGVVMAQAFGVPAFPIDTHIHRLAARWGLS-NGTNVERTERDLKAVFPRESWNDLHLQIIFFGREHCPARWHDLSTCPICSW 203
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A7V5RM63_9BACT (Endonuclease III n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5RM63_9BACT) HSP 1 Score: 240 bits (613), Expect = 4.920e-72 Identity = 117/198 (59.09%), Postives = 149/198 (75.25%), Query Frame = 1
Query: 916 KVLLIIQVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCS 1509
K LI++ +D LYP PPIP++H D FTLL V+LSAQTTDA VN VT ELFE APDP +SQM++EE+ QII+ GLAP+KAK L L++ L+++ VP +F+ L++LPGVG KTASVVM+QAFG+ FPVDTHIHRLA RWGL+ K+ + E DL FP++ W+KLHLQ IYFGRE+C AR H+ CP+CS
Sbjct: 6 KARLIMKTLDELYPQPPIPLHHSDPFTLLVSVVLSAQTTDAMVNRVTPELFERAPDPEKLSQMTEEEILQIIKPCGLAPSKAKALRGLAKILVEKHASRVPQSFEELEALPGVGHKTASVVMAQAFGIPAFPVDTHIHRLAARWGLSSG-KSVVQTERDLKRIFPKEHWNKLHLQIIYFGREYCPARNHDPQKCPLCS 202
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Match: A0A2Z4FLG6_9DELT (Endonuclease III n=1 Tax=Bradymonas sediminis TaxID=1548548 RepID=A0A2Z4FLG6_9DELT) HSP 1 Score: 240 bits (612), Expect = 7.630e-72 Identity = 111/193 (57.51%), Postives = 149/193 (77.20%), Query Frame = 1
Query: 934 QVMDVLYPDPPIPINHKDHFTLLCGVLLSAQTTDAQVNLVTKELFEVAPDPLSMSQMSQEELQQIIRSVGLAPTKAKHLIALSQQLLDRFDGDVPSTFKGLQSLPGVGRKTASVVMSQAFGMDTFPVDTHIHRLALRWGLTKNEKNANKVEEDLMWAFPRQSWSKLHLQFIYFGREHCQARIHNAATCPVCSW 1512
+++D LYP+PPIP++H D FTL VLLSAQ TD +VN+VT LF +A +P M+++S+EE+ + I+S GLAPTKAK + A S+ L++++DG VP T GL LPGVGRKTA VVM+Q +G+ +FPVDTHIHRLA RWGLT + K+ N+VE+DL FP+++W++ HLQ IYFGRE+C AR H A TCP+C W
Sbjct: 12 EILDELYPEPPIPLDHTDAFTLTIAVLLSAQCTDKRVNMVTPGLFALADNPHDMAKLSEEEILEQIKSCGLAPTKAKRIKAASELLVEKWDGVVPDTLSGLMKLPGVGRKTALVVMAQMYGVPSFPVDTHIHRLAKRWGLTTS-KSVNQVEKDLCAVFPKETWNRRHLQIIYFGREYCPARGHEAETCPICKW 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2293.6136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2293.6136.1 >prot_H-paniculata_contig2293.6136.1 ID=prot_H-paniculata_contig2293.6136.1|Name=mRNA_H-paniculata_contig2293.6136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=527bp MPASRSTSNASLLPSRAEVATRRSRFGNVGEVKTELQQVDERSTRSSKRWback to top mRNA from alignment at H-paniculata_contig2293:13249..20051+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2293.6136.1 ID=mRNA_H-paniculata_contig2293.6136.1|Name=mRNA_H-paniculata_contig2293.6136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6803bp|location=Sequence derived from alignment at H-paniculata_contig2293:13249..20051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2293:13249..20051+ >mRNA_H-paniculata_contig2293.6136.1 ID=mRNA_H-paniculata_contig2293.6136.1|Name=mRNA_H-paniculata_contig2293.6136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3162bp|location=Sequence derived from alignment at H-paniculata_contig2293:13249..20051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |