mRNA_H-paniculata_contig22923.6133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22923.6133.1
Unique NamemRNA_H-paniculata_contig22923.6133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5K0A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 9.340e-11
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSS N KHIDVR HF+  L+  G + ++HVS+  Q ADILTKAL
Sbjct:  138 LAENPLSSCNRKHIDVRHHFLRNLAEEGVLEIRHVSSEGQHADILTKAL 186
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BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 9.940e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  193 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 241
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.480e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  264 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 312
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5K6Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Q4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.560e-10
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AE+PLSS NSKHIDVR HF+  L+  G + ++HVS+  Q ADILTKAL
Sbjct:   96 LAESPLSSCNSKHIDVRHHFLTSLTEEGLLEIRHVSSEGQHADILTKAL 144
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.630e-10
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSS  SKHIDVR HF+  L+  G I + HV + KQ ADILTKAL
Sbjct:  175 LAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKAL 223
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.650e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  320 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 368
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  660 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  430 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 478
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  487 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 535
[Close]
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL 147
            +AENPLSSS SKHIDVR HF+  L+  G I V HV + +Q ADILTKAL
Sbjct:  895 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22923.6133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0A8_9PHAE9.340e-1161.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE9.940e-1165.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM6_9PHAE1.480e-1065.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K6Q4_9PHAE1.560e-1061.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8M4_9PHAE1.630e-1063.27Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE1.650e-1065.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE1.710e-1065.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE1.710e-1065.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JP36_9PHAE1.710e-1065.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKK1_9PHAE1.710e-1065.31Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22923contigH-paniculata_contig22923:1634..1780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog4558.Sb06g013016.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INKC@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.765993-CDS-H-paniculata_contig22923:1633..17801622929640.765993-CDS-H-paniculata_contig22923:1633..1780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22923 1634..1780 +
1691480947.3588853-CDS-H-paniculata_contig22923:1633..17801691480947.3588853-CDS-H-paniculata_contig22923:1633..1780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22923 1634..1780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22923.6133.1prot_H-paniculata_contig22923.6133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22923 1634..1780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22923.6133.1

>prot_H-paniculata_contig22923.6133.1 ID=prot_H-paniculata_contig22923.6133.1|Name=mRNA_H-paniculata_contig22923.6133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
IAENPLSSSNSKHIDVRRHFVHELSANGDITVKHVSTNKQCADILTKAL
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mRNA from alignment at H-paniculata_contig22923:1634..1780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22923.6133.1 ID=mRNA_H-paniculata_contig22923.6133.1|Name=mRNA_H-paniculata_contig22923.6133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig22923:1634..1780+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGCAGAAAATCCTCTGAGCTCGTCGAACAGCAAACATATAGATGTCCG
CAGACATTTCGTTCACGAACTCTCTGCGAATGGAGATATTACGGTAAAGC
ACGTTTCAACGAACAAACAATGCGCTGATATTCTAACGAAAGCGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig22923:1634..1780+

>mRNA_H-paniculata_contig22923.6133.1 ID=mRNA_H-paniculata_contig22923.6133.1|Name=mRNA_H-paniculata_contig22923.6133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig22923:1634..1780+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGCAGAAAATCCTCTGAGCTCGTCGAACAGCAAACATATAGATGTCCG
CAGACATTTCGTTCACGAACTCTCTGCGAATGGAGATATTACGGTAAAGC
ACGTTTCAACGAACAAACAATGCGCTGATATTCTAACGAAAGCGCTCATA
GCAGAAAATCCTCTGAGCTCGTCGAACAGCAAACATATAGATGTCCGCAG
ACATTTCGTTCACGAACTCTCTGCGAATGGAGATATTACGGTAAAGCACG
TTTCAACGAACAAACAATGCGCTGATATTCTAACGAAAGCGCTC
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