mRNA_H-paniculata_contig2291.6127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2291.6127.1
Unique NamemRNA_H-paniculata_contig2291.6127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 2.490e-28
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:  589 DSRYWDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFSMKADPRSQPASSANRGKFVESLKGTEAPQELYRKMRTRGHW 873
            +S+YW + +RP    D+GH CRECKRP +++   +A+RR GGRIE+RYHE CFS ++DPR+Q  +S  +GK+V  + GT+AP   Y+KMRT  HW
Sbjct:   28 ESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRR-GGRIEMRYHEACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
[Close]
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Match: A0A8J2F2Y4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F2Y4_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 3.110e-18
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:  544 ASSSAKVNTFFGSCDDSRYWDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFSMKADPRSQPASSANRGKFVESLKGTE---APQELYRKMRTRGHW 873
            A S A   T  G+ D++ YWDY  R   + D+GH+CREC++PF+++   +   RRG RI  RYH  CFS  ADPRSQ  SS + G+    L GT+   AP   + KMRT+ H+
Sbjct:  153 AFSLACSETTIGAGDETMYWDYQHRLAQRSDLGHMCRECRKPFTQVGEPI-TERRGSRISTRYHAECFSGYADPRSQARSSTHEGR----LAGTQFEAAPDGPFSKMRTQSHF 260
[Close]
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 87.8 bits (216), Expect = 3.200e-18
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  598 YWDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFSMKADPRSQPASSANRGKFVESLKGTEAPQELYRKMRTRGHW 873
            YW    R     D+GH C+ECKRPF  +   + VRR GGRIELRYHE C+S  ADPR+Q +SS N  +   +L    AP   +RKMRT  H+
Sbjct:   18 YWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRR-GGRIELRYHEQCYSGSADPRTQASSSFNSSQHAAALSAA-APALPFRKMRTSSHF 107
[Close]
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Match: A0A8J1Z4U7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z4U7_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 5.800e-18
Identity = 51/113 (45.13%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  544 ASSSAKVNTFFGSCDDSRYWDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFSMKADPRSQPASSANRGKFVESLKGTE---APQELYRKMRTRGHW 873
            A S A      G+ D++ YWDY  R T + D+GH CREC++PFS++   +   RRG RI  RYH  CFS  ADPRSQ  SS + G  V    GT+   AP   + KMRT  H+
Sbjct:   62 AQSVACSEVTIGAGDETLYWDYQHRLTLRSDLGHKCRECRKPFSKIGEPI-TERRGSRIACRYHAACFSGYADPRSQARSSTHEGNLV----GTQFEAAPGTPFSKMRTDTHF 169
[Close]
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Match: A0A3P3YIB7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIB7_PLABS)

HSP 1 Score: 73.6 bits (179), Expect = 2.700e-11
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  589 DSRYWDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFSMKADPRSQPASSANR 795
            D  YW +  R     D+GH+CRECK+P + L  ++A RR G R+++RYH  CFS   DPRSQ ++  ++
Sbjct:   65 DEDYWSFQVRECRPADLGHMCRECKKPITALGDLIAERR-GARVQMRYHRACFSDDGDPRSQDSAKLSK 132
[Close]
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Match: A0A0L0DNU8_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNU8_THETB)

HSP 1 Score: 52.8 bits (125), Expect = 4.850e-5
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:  592 SRYWDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFSMKADPRSQPASS 786
            S YW        +G   HLCRECK   ++ +  +   R G RI+LRYH+ CFS  ADPRSQ  SS
Sbjct:   56 SSYWRIERGRVAEGTR-HLCRECKAYITKGSKYII--RHGARIQLRYHQECFSGDADPRSQAGSS 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2291.6127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA2.490e-2851.58Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J2F2Y4_9DINO3.110e-1844.25Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1LEE0_NEODS3.200e-1848.91Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A8J1Z4U7_9DINO5.800e-1845.13Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A3P3YIB7_PLABS2.700e-1143.48Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0L0DNU8_THETB4.850e-546.15Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2291contigH-paniculata_contig2291:8206..9558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue8.7e-18
Seed eggNOG ortholog227086.JGI_V11_126617
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6M4@1,2SDAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size878
Cds size876
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.2131455-CDS-H-paniculata_contig2291:8205..89091622929640.2131455-CDS-H-paniculata_contig2291:8205..8909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2291 8206..8909 +
1691480947.1288114-CDS-H-paniculata_contig2291:8205..89091691480947.1288114-CDS-H-paniculata_contig2291:8205..8909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2291 8206..8909 +
1622929640.2260678-CDS-H-paniculata_contig2291:9386..95581622929640.2260678-CDS-H-paniculata_contig2291:9386..9558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2291 9387..9558 +
1691480947.139304-CDS-H-paniculata_contig2291:9386..95581691480947.139304-CDS-H-paniculata_contig2291:9386..9558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2291 9387..9558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2291.6127.1prot_H-paniculata_contig2291.6127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2291 8206..9558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2291.6127.1

>prot_H-paniculata_contig2291.6127.1 ID=prot_H-paniculata_contig2291.6127.1|Name=mRNA_H-paniculata_contig2291.6127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp
TFSYNGSGLQQVCGFETSMNCCSDERDNKRSPIPTSSSFTPSLVTTVITD
VVSHVPAAFGGDGKQLSRTRRKDTDHEQQRRKQKRPVAAAAGYRRVEQPW
RHVGGSSERTPPLPAPNGQDEEKKKGRRQPEYDLFPLQARGRQTGDNGVA
QVAGCRRRSSESSVMAQLSRPPFSQSSPTTCASSSAKVNTFFGSCDDSRY
WDYAFRPTNKGDMGHLCRECKRPFSELNAVMAVRRRGGRIELRYHEGCFS
MKADPRSQPASSANRGKFVESLKGTEAPQELYRKMRTRGHW*
back to top

mRNA from alignment at H-paniculata_contig2291:8206..9558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2291.6127.1 ID=mRNA_H-paniculata_contig2291.6127.1|Name=mRNA_H-paniculata_contig2291.6127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-paniculata_contig2291:8206..9558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTCTCCTATAATGGATCCGGATTACAGCAAGTGTGTGGCTTTGAAAC
ATCAATGAACTGCTGCAGCGATGAGCGGGACAACAAGAGGTCACCGATTC
CCACTTCATCTTCTTTTACTCCGTCTCTCGTGACCACAGTTATCACCGAC
GTAGTATCGCACGTTCCTGCTGCCTTTGGTGGGGATGGGAAACAACTATC
AAGAACTCGCCGAAAGGATACTGATCATGAGCAGCAAAGGCGGAAGCAGA
AGCGACCAGTTGCCGCCGCGGCTGGCTACCGGAGGGTCGAACAACCATGG
CGACATGTTGGAGGATCAAGCGAAAGGACGCCGCCGCTACCTGCACCGAA
CGGGCAGGACGAGGAGAAGAAGAAGGGTCGGCGGCAACCTGAGTACGACT
TATTTCCTTTGCAGGCACGCGGCAGACAGACGGGAGACAATGGGGTAGCT
CAAGTTGCCGGCTGCCGCCGACGGTCCAGCGAGTCGTCCGTCATGGCTCA
GTTGTCGCGACCGCCTTTTTCTCAGTCTTCTCCTACCACCTGCGCTTCTT
CTAGTGCTAAGGTAAATACTTTCTTTGGAAGCTGCGATGACAGTCGGTAC
TGGGATTACGCTTTCCGCCCGACGAACAAAGGGGACATGGGTCATCTTTG
TAGGGAGTGCAAGCGACCGTTTTCTGAGCTCAACGCGGTCATGGCTGTCC
GCAGGTGAGAGTATGCTGTGTTACTTTGCTGTTACTGTGCTATACGCTAA
GACTGTGTGCATGTGAATCAACGCGGCAGTAGGTTTGGCCTTCTGCACTG
CAGCTCCATGTCGTAGACGATGTCCAGACAGCTCTTGGTAGATGTTAATA
AGGGTGACAGCTCAATCAAACTCTTCGGCATTCTCGGAACTGACATCTTG
CCTACTTCTTTGTACAGACAAACAAATGATGTCACGCATCGAAAACAGAT
ACGATGGTATGTTTCGTAGCAGTGCCAACCCGCATGTTGCTGCGAACGCG
ATCATTGTCGCATTGTTCACGCTTGAAGAATCAATCGCCTCCTGCCCGAA
TTGTCGTACAACGAGATATCGTGGGCCTCGGTATCTCTATCTGTAGCTTC
AACGTCGTCATGATTTTCTTTATCCCTCTCCCATGGTGTATCTTCCGCTG
AATTATGTACGTGCCATCTGTTTTGTATGAGGAGAGGTGGACGGATCGAG
CTGCGATACCACGAGGGTTGCTTCAGCATGAAAGCTGACCCACGGAGTCA
GCCTGCAAGCTCAGCGAACCGGGGCAAGTTCGTGGAGTCCCTCAAGGGCA
CGGAAGCGCCGCAAGAGTTGTACCGCAAGATGCGCACGCGCGGTCACTGG
TGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2291:8206..9558+

>mRNA_H-paniculata_contig2291.6127.1 ID=mRNA_H-paniculata_contig2291.6127.1|Name=mRNA_H-paniculata_contig2291.6127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig2291:8206..9558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTCTCCTATAATGGATCCGGATTACAGCAAGTGTGTGGCTTTGAAAC
ATCAATGAACTGCTGCAGCGATGAGCGGGACAACAAGAGGTCACCGATTC
CCACTTCATCTTCTTTTACTCCGTCTCTCGTGACCACAGTTATCACCGAC
GTAGTATCGCACGTTCCTGCTGCCTTTGGTGGGGATGGGAAACAACTATC
AAGAACTCGCCGAAAGGATACTGATCATGAGCAGCAAAGGCGGAAGCAGA
AGCGACCAGTTGCCGCCGCGGCTGGCTACCGGAGGGTCGAACAACCATGG
CGACATGTTGGAGGATCAAGCGAAAGGACGCCGCCGCTACCTGCACCGAA
CGGGCAGGACGAGGAGAAGAAGAAGGGTCGGCGGCAACCTGAGTACGACT
TATTTCCTTTGCAGGCACGCGGCAGACAGACGGGAGACAATGGGGTAGCT
CAAGTTGCCGGCTGCCGCCGACGGTCCAGCGAGTCGTCCGTCATGGCTCA
GTTGTCGCGACCGCCTTTTTCTCAGTCTTCTCCTACCACCTGCGCTTCTT
CTAGTGCTAAGGTAAATACTTTCTTTGGAAGCTGCGATGACAGTCGGTAC
TGGGATTACGCTTTCCGCCCGACGAACAAAGGGGACATGGGTCATCTTTG
TAGGGAGTGCAAGCGACCGTTTTCTGAGCTCAACGCGGTCATGGCTGTCC
GCAGACCTTCTCCTATAATGGATCCGGATTACAGCAAGTGTGTGGCTTTG
AAACATCAATGAACTGCTGCAGCGATGAGCGGGACAACAAGAGGTCACCG
ATTCCCACTTCATCTTCTTTTACTCCGTCTCTCGTGACCACAGTTATCAC
CGACGTAGTATCGCACGTTCCTGCTGCCTTTGGTGGGGATGGGAAACAAC
TATCAAGAACTCGCCGAAAGGATACTGATCATGAGCAGCAAAGGCGGAAG
CAGAAGCGACCAGTTGCCGCCGCGGCTGGCTACCGGAGGGTCGAACAACC
ATGGCGACATGTTGGAGGATCAAGCGAAAGGACGCCGCCGCTACCTGCAC
CGAACGGGCAGGACGAGGAGAAGAAGAAGGGTCGGCGGCAACCTGAGTAC
GACTTATTTCCTTTGCAGGCACGCGGCAGACAGACGGGAGACAATGGGGT
AGCTCAAGTTGCCGGCTGCCGCCGACGGTCCAGCGAGTCGTCCGTCATGG
CTCAGTTGTCGCGACCGCCTTTTTCTCAGTCTTCTCCTACCACCTGCGCT
TCTTCTAGTGCTAAGGTAAATACTTTCTTTGGAAGCTGCGATGACAGTCG
GTACTGGGATTACGCTTTCCGCCCGACGAACAAAGGGGACATGGGTCATC
TTTGTAGGGAGTGCAAGCGACCGTTTTCTGAGCTCAACGCGGTCATGGCT
GTCCGCAGGAGAGGTGGACGGATCGAGCTGCGATACCACGAGGGTTGCTT
CAGCATGAAAGCTGACCCACGGAGTCAGCCTGCAAGCTCAGCGAACCGGG
GCAAGTTCGTGGAGTCCCTCAAGGGCACGGAAGCGCCGCAAGAGTTGTAC
CGCAAGATGCGCACGCGCGGTCACTGGTGAGAGAGGTGGACGGATCGAGC
TGCGATACCACGAGGGTTGCTTCAGCATGAAAGCTGACCCACGGAGTCAG
CCTGCAAGCTCAGCGAACCGGGGCAAGTTCGTGGAGTCCCTCAAGGGCAC
GGAAGCGCCGCAAGAGTTGTACCGCAAGATGCGCACGCGCGGTCACTGGT
GA
back to top