mRNA_H-paniculata_contig229.6118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig229.6118.1
Unique NamemRNA_H-paniculata_contig229.6118.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig229.6118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig229contigH-paniculata_contig229:1715..2033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.3669837-UTR-H-paniculata_contig229:1714..17241622929638.3669837-UTR-H-paniculata_contig229:1714..1724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig229 1715..1724 +
1691480946.5356424-UTR-H-paniculata_contig229:1714..17241691480946.5356424-UTR-H-paniculata_contig229:1714..1724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig229 1715..1724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.3848362-CDS-H-paniculata_contig229:1724..20331622929638.3848362-CDS-H-paniculata_contig229:1724..2033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig229 1725..2033 +
1691480946.5449913-CDS-H-paniculata_contig229:1724..20331691480946.5449913-CDS-H-paniculata_contig229:1724..2033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig229 1725..2033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig229.6118.1prot_H-paniculata_contig229.6118.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig229 1725..2033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig229.6118.1

>prot_H-paniculata_contig229.6118.1 ID=prot_H-paniculata_contig229.6118.1|Name=mRNA_H-paniculata_contig229.6118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MALYRTRSGNFTEKNARKKFREAFHDCNKRPKAMKNWKTGNIYTWHVKRQ
NITEFEIPSGGFNTFGPNFPCGHIKNFRYSAKHVVARTIPLDIVSRIGKT
ETS
back to top

mRNA from alignment at H-paniculata_contig229:1715..2033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig229.6118.1 ID=mRNA_H-paniculata_contig229.6118.1|Name=mRNA_H-paniculata_contig229.6118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=319bp|location=Sequence derived from alignment at H-paniculata_contig229:1715..2033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGGGAAAATGGCCCTATACCGAACCCGTTCTGGAAATTTCACAGAAA
AAAATGCCCGAAAAAAATTCAGAGAAGCTTTTCACGACTGTAACAAGCGG
CCTAAAGCCATGAAAAACTGGAAAACTGGGAATATTTATACGTGGCACGT
AAAACGCCAAAATATCACAGAGTTCGAAATTCCCAGTGGCGGATTCAATA
CTTTTGGCCCAAATTTTCCGTGTGGCCACATCAAGAATTTCAGATATTCG
GCCAAACACGTAGTCGCTAGAACCATCCCCCTTGACATTGTCTCAAGAAT
CGGGAAAACTGAAACTTCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig229:1715..2033+

>mRNA_H-paniculata_contig229.6118.1 ID=mRNA_H-paniculata_contig229.6118.1|Name=mRNA_H-paniculata_contig229.6118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig229:1715..2033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCTATACCGAACCCGTTCTGGAAATTTCACAGAAAAAAATGCCCG
AAAAAAATTCAGAGAAGCTTTTCACGACTGTAACAAGCGGCCTAAAGCCA
TGAAAAACTGGAAAACTGGGAATATTTATACGTGGCACGTAAAACGCCAA
AATATCACAGAGTTCGAAATTCCCAGTGGCGGATTCAATACTTTTGGCCC
AAATTTTCCGTGTGGCCACATCAAGAATTTCAGATATTCGGCCAAACACG
TAGTCGCTAGAACCATCCCCCTTGACATTGTCTCAAGAATCGGGAAAACT
GAAACTTCAATGGCCCTATACCGAACCCGTTCTGGAAATTTCACAGAAAA
AAATGCCCGAAAAAAATTCAGAGAAGCTTTTCACGACTGTAACAAGCGGC
CTAAAGCCATGAAAAACTGGAAAACTGGGAATATTTATACGTGGCACGTA
AAACGCCAAAATATCACAGAGTTCGAAATTCCCAGTGGCGGATTCAATAC
TTTTGGCCCAAATTTTCCGTGTGGCCACATCAAGAATTTCAGATATTCGG
CCAAACACGTAGTCGCTAGAACCATCCCCCTTGACATTGTCTCAAGAATC
GGGAAAACTGAAACTTCA
back to top