mRNA_H-paniculata_contig22890.6114.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22890.6114.1
Unique NamemRNA_H-paniculata_contig22890.6114.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A6H5KCA7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA7_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 4.520e-107
Identity = 167/194 (86.08%), Postives = 183/194 (94.33%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            QELV+MIKNP PF+AAGARLPSGLLMVGPPGTGKTLMARVMA+EAGVPFYYCSGSDFVEM+VGRGAARVRKLF KA KTAPCI+FLDELDALGKERS + GGRQ+NDEAEQTLNQLLA MDGLDTNNNGVMVIAATNR++VLD+ALTRPGRFDR+VRV+VP+ AGREAILKVHTR+M L D A+L +VAELTPG
Sbjct:  375 QELVSMIKNPAPFIAAGARLPSGLLMVGPPGTGKTLMARVMAAEAGVPFYYCSGSDFVEMYVGRGAARVRKLFVKAGKTAPCIIFLDELDALGKERSGT-GGRQTNDEAEQTLNQLLACMDGLDTNNNGVMVIAATNRYEVLDNALTRPGRFDRIVRVDVPDAAGREAILKVHTRKMKLEDVAVLRAVAELTPG 567          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: D7G2Q1_ECTSI (Cell division protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q1_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.490e-103
Identity = 167/215 (77.67%), Postives = 182/215 (84.65%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVP---------------------FYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            QELV+MIKNP PF+AAGARLPSGLLMVGPPGTGKTLMARVMA+EAGVP                     FYYCSGSDFVEM+VGRGAARVRKLF KA KTAPCI+FLDELDALGKERS + GGRQ+NDEAEQTLNQLLA MDGLDTNNNGVMVIAATNR+DVLD+ALTRPGRFDR+VRV+VP+ AGREAILKVHTR+M L D  +L +VAELTPG
Sbjct:  222 QELVSMIKNPAPFIAAGARLPSGLLMVGPPGTGKTLMARVMAAEAGVPLPPPRRFRGVGGYLLIGRLPKFYYCSGSDFVEMYVGRGAARVRKLFVKAGKTAPCIIFLDELDALGKERSGT-GGRQTNDEAEQTLNQLLACMDGLDTNNNGVMVIAATNRYDVLDNALTRPGRFDRIVRVDVPDAAGREAILKVHTRKMKLEDVDVLRAVAELTPG 435          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A835Z243_9STRA (Cell division protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z243_9STRA)

HSP 1 Score: 295 bits (755), Expect = 5.340e-96
Identity = 149/194 (76.80%), Postives = 171/194 (88.14%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            +ELV ++++P P++AAGARLPSG+++VGPPGTGKTL+ARVMA+EAGVP+YYCSGSDFVEMFVGRGAARVRKLF +AAKTAPCIVF DELDALGK+RS  A  R SNDEAEQTLNQLLA MDGLDTNNNGV+V+AATNRFD+LD ALTRPGRFDR+VRV VP  AGR+A   VHTR M L D ALL +VA +TPG
Sbjct:  209 RELVAILRDPAPYVAAGARLPSGVMLVGPPGTGKTLLARVMAAEAGVPYYYCSGSDFVEMFVGRGAARVRKLFARAAKTAPCIVFFDELDALGKQRSMGAN-RGSNDEAEQTLNQLLACMDGLDTNNNGVIVVAATNRFDMLDDALTRPGRFDRIVRVGVPEEAGRQASCTVHTRNMQLEDPALLVTVAAITPG 401          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A4D9DB51_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB51_9STRA)

HSP 1 Score: 265 bits (676), Expect = 1.800e-84
Identity = 133/194 (68.56%), Postives = 161/194 (82.99%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            +ELV M+K+P  +   GARLP G+L+ GPPGTGKTL+AR +ASEAGVPF Y +GS+FVEMFVGRGAAR+R LF+KA K APCI+FLDELD LGK+RS   GG  SNDE EQTLNQLLA MDGLD+N +GV+VIAATNR+++LD ALTRPGR DR+VRVE+P+ +GREAIL+VHTR+  L   A LG +A+LTPG
Sbjct:  177 RELVDMLKSPQKYGKLGARLPKGILLAGPPGTGKTLLARALASEAGVPFLYSAGSEFVEMFVGRGAARIRTLFQKAQKQAPCIIFLDELDTLGKQRSLRLGG--SNDEVEQTLNQLLACMDGLDSNQSGVIVIAATNRYEILDDALTRPGRLDRIVRVELPDRSGREAILRVHTRKTPLEHDADLGKIAQLTPG 368          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A6V1T8M4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T8M4_HETAK)

HSP 1 Score: 261 bits (668), Expect = 4.020e-84
Identity = 131/194 (67.53%), Postives = 162/194 (83.51%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            QE+VT+++NP  ++ AG RLPSG++MVGPPGTGKTL+A VMA+EAGVPF+ CSGS+FVEMFVGRGAARVR +FE+A K APCI+F DE+D LG+ RS+ AG  QS  EA+QTLNQLLA MDGLDT+NNGV+V+AATNR++VLD ALTRPGRFDRVVRV +P+  GR+ IL VH +++ L +   L  VAELTPG
Sbjct:  109 QEIVTILRNPAVYIKAGVRLPSGVVMVGPPGTGKTLLASVMAAEAGVPFFSCSGSEFVEMFVGRGAARVRHIFERARKAAPCIIFFDEIDVLGRARSSLAGPGQSQ-EADQTLNQLLACMDGLDTSNNGVVVVAATNRYEVLDEALTRPGRFDRVVRVPLPDRQGRQDILAVHCQKLTLDEDVDLERVAELTPG 301          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A7S2V103_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V103_9STRA)

HSP 1 Score: 261 bits (666), Expect = 5.450e-83
Identity = 129/194 (66.49%), Postives = 159/194 (81.96%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            +E+V +++NP P+L AGARLPSG+L+VGPPGTGKTL+ARVMA+E+GVPFYYC+GSDFVEMFVGRGAARVR LF +A K+APCI+F DELDALG++R  S    ++N+E +QT+NQLL  +DGLDTNNNG++V+ ATNR++VLD ALTRPGRFDRVVRV  P+  GR  IL VHTR M   +   L  VA LTPG
Sbjct:  177 KEIVEILRNPLPYLKAGARLPSGVLLVGPPGTGKTLLARVMAAESGVPFYYCAGSDFVEMFVGRGAARVRSLFARAQKSAPCIIFFDELDALGRKRGDSF--MRTNEEFDQTINQLLTCLDGLDTNNNGIIVVGATNRYEVLDEALTRPGRFDRVVRVPAPDQEGRREILSVHTRNMKCDEDVDLDRVAALTPG 368          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A7S0IXE4_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IXE4_9EUKA)

HSP 1 Score: 263 bits (672), Expect = 8.320e-83
Identity = 126/194 (64.95%), Postives = 166/194 (85.57%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            QE+V+M++ P  + AAGAR+P+G+LMVGPPGTGKTL+ARVMA++A VPF+YCSGSDFVE+F+GRGAAR+R LF++AA  APC++F+DELDALGK+R+   GG+  NDE EQTLNQ+LA MDG+D++NNGV+V+ ATNR+++LD ALTRPGRFDR+VR+E+P+ AGR AIL+VHTR++ LAD   L  +A   PG
Sbjct:  225 QEVVSMLRQPERYAAAGARVPAGVLMVGPPGTGKTLLARVMAAQAQVPFFYCSGSDFVELFIGRGAARMRALFKEAAAVAPCVIFIDELDALGKQRTLRLGGQ--NDEVEQTLNQMLACMDGVDSSNNGVVVMGATNRYEILDPALTRPGRFDRLVRMELPDDAGRLAILRVHTRKLALADDVQLARIASTAPG 416          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: W7U1P6_9STRA (Atp-dependent metalloprotease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1P6_9STRA)

HSP 1 Score: 265 bits (676), Expect = 1.010e-82
Identity = 133/194 (68.56%), Postives = 161/194 (82.99%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            +ELV M+K+P  +   GARLP G+L+ GPPGTGKTL+AR +ASEAGVPF Y +GS+FVEMFVGRGAAR+R LF+KA K APCI+FLDELD LGK+RS   GG  SNDE EQTLNQLLA MDGLD+N +GV+VIAATNR+++LD ALTRPGR DR+VRVE+P+ +GREAIL+VHTR+  L   A LG +A+LTPG
Sbjct:  330 RELVDMLKSPQKYGKLGARLPKGILLAGPPGTGKTLLARALASEAGVPFLYSAGSEFVEMFVGRGAARIRTLFQKAQKQAPCIIFLDELDTLGKQRSLRLGG--SNDEVEQTLNQLLACMDGLDSNQSGVIVIAATNRYEILDDALTRPGRLDRIVRVELPDRSGREAILRVHTRKTPLEHDADLGKIAQLTPG 521          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A7S0LIX3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIX3_9EUKA)

HSP 1 Score: 258 bits (658), Expect = 2.920e-82
Identity = 124/194 (63.92%), Postives = 164/194 (84.54%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            QE+V+M++ P  + AAGAR+P+G+LMVGPPGTGKTL+ARVMA++A VPF+YCSGSDFVE+FVGRGAAR+R LF++A+ T PC++F+DELDALGK+RS   GG+  NDE EQTLNQ+LA MDG+D++NNG++V+ ATNR+++LD ALTRPGRFDR+VR+E+P+  GR AIL+VHTR+++L     LG VA    G
Sbjct:  140 QEVVSMLREPERYAAAGARVPAGVLMVGPPGTGKTLLARVMAAQAEVPFFYCSGSDFVELFVGRGAARMRALFKEASATRPCVIFIDELDALGKQRSMRLGGQ--NDEVEQTLNQMLACMDGVDSSNNGIVVMGATNRYEILDPALTRPGRFDRLVRMELPDEEGRAAILRVHTRKLHLEPDVQLGRVAAAASG 331          
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Match: A0A7R9U5K1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5K1_9STRA)

HSP 1 Score: 259 bits (662), Expect = 3.210e-81
Identity = 129/194 (66.49%), Postives = 160/194 (82.47%), Query Frame = 1
Query:    1 QELVTMIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGSDFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQSNDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRVVRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG 582
            +E+VTM+++P  +LAAGAR+P+G+L+VGPPGTGKTL+AR MA EA VPF+YC+GSDFVEMFVGRGAARVR LFEKA K +PCI+F+DELDALGK+RS     ++ NDEAEQTLNQLLA MDGLD +  G++V+ ATNR+D+LD ALTRPGRFDR+V V  P+  GR  IL+VH R++NLA S  L  +A LTPG
Sbjct:  275 REIVTMLRDPQKYLAAGARIPAGVLLVGPPGTGKTLLARCMAGEARVPFFYCTGSDFVEMFVGRGAARVRTLFEKAKKASPCILFIDELDALGKQRSFRL--QRGNDEAEQTLNQLLACMDGLDKSGRGIIVLGATNRYDILDEALTRPGRFDRIVTVNPPDRDGRRDILQVHCRKLNLAPSVDLRQIANLTPG 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22890.6114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCA7_9PHAE4.520e-10786.08AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2Q1_ECTSI1.490e-10377.67Cell division protein n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z243_9STRA5.340e-9676.80Cell division protein n=1 Tax=Tribonema minus TaxI... [more]
A0A4D9DB51_9STRA1.800e-8468.56AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A6V1T8M4_HETAK4.020e-8467.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V103_9STRA5.450e-8366.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0IXE4_9EUKA8.320e-8364.95Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
W7U1P6_9STRA1.010e-8268.56Atp-dependent metalloprotease n=1 Tax=Nannochlorop... [more]
A0A7S0LIX3_9EUKA2.920e-8263.92Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7R9U5K1_9STRA3.210e-8166.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22890contigH-paniculata_contig22890:275..3431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.1
Seed ortholog evalue7.3e-82
Seed eggNOG ortholog2880.D7G2Q1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031967,GO:0031975,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-11_003070.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size582
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22890.6114.1prot_H-paniculata_contig22890.6114.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22890 290..3431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.1020257-UTR-H-paniculata_contig22890:274..2891622929638.1020257-UTR-H-paniculata_contig22890:274..289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22890 275..289 +
1691480946.466962-UTR-H-paniculata_contig22890:274..2891691480946.466962-UTR-H-paniculata_contig22890:274..289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22890 275..289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.1186206-CDS-H-paniculata_contig22890:289..4181622929638.1186206-CDS-H-paniculata_contig22890:289..418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22890 290..418 +
1691480946.479493-CDS-H-paniculata_contig22890:289..4181691480946.479493-CDS-H-paniculata_contig22890:289..418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22890 290..418 +
1622929638.1338584-CDS-H-paniculata_contig22890:2158..23261622929638.1338584-CDS-H-paniculata_contig22890:2158..2326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22890 2159..2326 +
1691480946.4893568-CDS-H-paniculata_contig22890:2158..23261691480946.4893568-CDS-H-paniculata_contig22890:2158..2326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22890 2159..2326 +
1622929638.1514506-CDS-H-paniculata_contig22890:3161..34311622929638.1514506-CDS-H-paniculata_contig22890:3161..3431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22890 3162..3431 +
1691480946.500087-CDS-H-paniculata_contig22890:3161..34311691480946.500087-CDS-H-paniculata_contig22890:3161..3431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22890 3162..3431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22890.6114.1

>prot_H-paniculata_contig22890.6114.1 ID=prot_H-paniculata_contig22890.6114.1|Name=mRNA_H-paniculata_contig22890.6114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MIKNPGPFLAAGARLPSGLLMVGPPGTGKTLMARVMASEAGVPFYYCSGS
DFVEMFVGRGAARVRKLFEKAAKTAPCIVFLDELDALGKERSASAGGRQS
NDEAEQTLNQLLASMDGLDTNNNGVMVIAATNRFDVLDSALTRPGRFDRV
VRVEVPNTAGREAILKVHTRRMNLADSALLGSVAELTPG
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mRNA from alignment at H-paniculata_contig22890:275..3431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22890.6114.1 ID=mRNA_H-paniculata_contig22890.6114.1|Name=mRNA_H-paniculata_contig22890.6114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3157bp|location=Sequence derived from alignment at H-paniculata_contig22890:275..3431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGCTGGTAACGATGATCAAGAACCCCGGGCCGTTCCTCGCGGCGGG CGCCCGCCTGCCGAGCGGTTTGTTGATGGTCGGGCCTCCCGGCACCGGCA AGACTTTGATGGCCCGGGTCATGGCGTCGGAGGCGGGAGTGCCGGTGAGA TGTGGTGGTGAGGTTCGTTTTTTGAGATACAAAGGCGGTTAAATTCCTGT ATGTTCTCATGTATTGTTTGGCCATTATCTACATGTTCAGGGCACACTCG TACAGGTAGCTTTTCGCTGTCGCGAGAAGTAACTAATAATTGGATTGGAT TGTGTCAAAAAAGCGGTGGGGGGAGAACCGCCCGTACTTTTGGTGTATCG GTGGATATGAACGTCGCAACTCGGCTTGTGTGTCCTTTCCAAACTGCGGA TATCAGTAGTACCGTACGTAGTCTGACAGTTTTGCAAATAGTACCAGTAG TAGAGTATGACCGCGCGTGTACTACGCCTGTGCAGTTCGTTTTTGTTCTC AGCCGACGGACTCGCTGGGCTCGCAGTGGGAATCTTAACTAACGTAAACA TTAAAAAAAAGAATTTTATAAGGAAACTCATTGCTGGAAAAACAATAACA TAATACATATATATATATATATATATATATTCTAGATTATTTTGTGGATA TTTTTCAGGTTTCGTTACTTGTAAAATTTGAAGAAAAGCATGGGAAAAAA GTGTCGGTACTTGAACTCGGTCAAGGATATCTATTAACAAACGACATTTA TTCATATTAAACAAAAATTTTGGTCATTTTTTTCCTGCTGGTGAGCTTCT GTTGAGAAATTACGATTTGGAGACATTAGATGTTGGGGGGATTACGTAGC GAACAAATGCTGTTCGCTGCGCTCGCGTGAACACTGATTTCGCCAGGAGT CAGAGCTTAAAATAACGCTCCGAAACACGACCTCCTCTCTAATACCGTAT TGATAATGAACAGTTCAGGGTGAAGTTGAAATCTTCGAATCCGATTTTGT TGAAATCTGCGGTGCTTCCTGTGTTGGCACTGCGGAGAAATCTCGTTGAT ATATACTCCTATTCATATGTCATCAGACAGAGATGGGGCGTGCTCTTTTC GACAATGCGGGCTCTGTCTCGCTCTTTTTAAATGTCAAAGATATGAACAA CCTTTAGCTTGCAACGTTGCGCGGGTCATAGGATAGCTTTTGCGGCGTGT TTTTGTACGTTTTAGTTAATACTATTACAATTGTCATCATCCATGATTTT GCGTTAAATCGAACAATCTGAAGCGTAAAATATTTCGGCTGTAAGTATGC TGTATAACAAAAGAATTCTTTTATTGGAGAAGCTTTATCAAACGCGTCAG CATTTTTTCTGGGATCCGGGCGATCTGGACGCCCCCCCCCCATATTTTTG TTGGGTTTGTGGATCATGATTCTATCACTCAACAGTGTTGAAAATACTGA GTGTATCTCTGGTTTGATTCGTGGTTATGATGGTTGTGGTCATCTTTTTA TCTCGTACATTTTCCACTTCTACTGGACGCCCCCTCATATTGGTCATGAT CTAATTTTGCTGAAGAGTGTACGCCCCCCCCCCCCCCGTATTGTTCATGA TCTAATTGTGCTGATAAATGTATACAACTATAATTTGAGGCCAGCTGCAT AACCTCAAAATAGGTGCAATGGAGTTATTATTTGCTTTGGAGCTGTAGTT GAAGTAACTGGGAATAGTTTAACTTAGGATTGAGGATTCTGGTCTCTGTG TGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTTTGTTTGTGTGTT TTCAATTTTAGGATCCTTTCCCCCCCTTTAACCGTTTCCCCTACTGCGCT ACCTTAACGGATTCCGTGTGGCACGTTCCGACAGTTTTACTACTGTTCGG GGTCTGATTTCGTGGAGATGTTCGTGGGGAGGGGCGCGGCGCGCGTGCGC AAGCTGTTCGAGAAGGCGGCGAAGACCGCCCCCTGTATCGTGTTCCTCGA TGAGCTTGATGCCTTGGGGAAAGAGCGCTCGGCGAGTGCCGGCGGTCGCC AGGTGTGTTTGGTGAAATATCTAGTGGTAGGAGCCATTGCTACGCTACGT CCGTGCAGCTAGTTCGTGCATGTCCTCGACCCACAGACTCGCTACGGTCG AAGCGGGCGCTCGCGTAGGGATCAGCGTTTTGGAACACGTTAAAATGCAG ATGAAGGAAATCATGTCCATTGAGGATCCGGCACACAGGATTATCCTATG GCAGATAGTGGCTAGAATTCGATGGTCATGGTAAATGCTATTTAGTGATA CGGATGGATATATTCCCTGGTAGTATATGTACAGCAAATAATCCATATTG TTGTCCTTGTTCGAATGTGCAACTTCTGAGATTCCTCCTAATTGGTTCAT TTTGTGGATAATAACCAAGCACTCCAGCAGCTTTGAGATGCTGAGCATAC TGTACCTCCGTTTTGTTTCACTGCTATTGTTGTGTTTTTGCAGTTCAGAC AGTAAGTTGTGCATATCTGCTTGTACTTTTCACTCGCTCTTGACTCTATG TTACTTCTTCCAAACCGTCTTCTCATAGTGTCGGTGCCGTCCTGCTGATG AATCTATCCTCGGCAATGGAGGTGTGTGACGTCGTTGTGCAGTAGTTGGT GGAAATGCTGTTGCCCCTGGTCGAGTGTATGACTAGTTGTCTGGGAACTG CTGCGTGTTGTTGCTATCACGTATCATGTATGTAGACTTTCTTTATCAGA CCAAGATCAGTCAAAATTCGTTTGTTTACATTGACATAGTAGTAGCAGCA GCGGAAGCACGGTGCGAGCGACAGGGAAACAAGCCCCCCTCCCCATAAAC ACATTCCCCACCTGCCTCTTCTCCCCAACCCTTTCAGAGCAACGATGAGG CCGAACAAACGCTGAACCAGCTGCTGGCCTCCATGGATGGTCTGGATACA AATAATAACGGCGTGATGGTTATCGCCGCGACGAACCGCTTTGACGTGCT CGACAGCGCGCTCACTCGACCCGGCAGATTCGACCGGGTTGTGAGGGTGG AGGTGCCAAATACAGCCGGGCGGGAGGCGATTCTGAAGGTCCACACCAGG CGAATGAACCTGGCTGACTCGGCCCTCTTGGGATCAGTGGCCGAACTGAC CCCCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig22890:275..3431+

>mRNA_H-paniculata_contig22890.6114.1 ID=mRNA_H-paniculata_contig22890.6114.1|Name=mRNA_H-paniculata_contig22890.6114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig22890:275..3431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAGAACCCCGGGCCGTTCCTCGCGGCGGGCGCCCGCCTGCCGAG
CGGTTTGTTGATGGTCGGGCCTCCCGGCACCGGCAAGACTTTGATGGCCC
GGGTCATGGCGTCGGAGGCGGGAGTGCCGATGATCAAGAACCCCGGGCCG
TTCCTCGCGGCGGGCGCCCGCCTGCCGAGCGGTTTGTTGATGGTCGGGCC
TCCCGGCACCGGCAAGACTTTGATGGCCCGGGTCATGGCGTCGGAGGCGG
GAGTGCCGTTTTACTACTGTTCGGGGTCTGATTTCGTGGAGATGTTCGTG
GGGAGGGGCGCGGCGCGCGTGCGCAAGCTGTTCGAGAAGGCGGCGAAGAC
CGCCCCCTGTATCGTGTTCCTCGATGAGCTTGATGCCTTGGGGAAAGAGC
GCTCGGCGAGTGCCGGCGGTCGCCAGTTTTACTACTGTTCGGGGTCTGAT
TTCGTGGAGATGTTCGTGGGGAGGGGCGCGGCGCGCGTGCGCAAGCTGTT
CGAGAAGGCGGCGAAGACCGCCCCCTGTATCGTGTTCCTCGATGAGCTTG
ATGCCTTGGGGAAAGAGCGCTCGGCGAGTGCCGGCGGTCGCCAGAGCAAC
GATGAGGCCGAACAAACGCTGAACCAGCTGCTGGCCTCCATGGATGGTCT
GGATACAAATAATAACGGCGTGATGGTTATCGCCGCGACGAACCGCTTTG
ACGTGCTCGACAGCGCGCTCACTCGACCCGGCAGATTCGACCGGGTTGTG
AGGGTGGAGGTGCCAAATACAGCCGGGCGGGAGGCGATTCTGAAGGTCCA
CACCAGGCGAATGAACCTGGCTGACTCGGCCCTCTTGGGATCAGTGGCCG
AACTGACCCCCGGTAGCAACGATGAGGCCGAACAAACGCTGAACCAGCTG
CTGGCCTCCATGGATGGTCTGGATACAAATAATAACGGCGTGATGGTTAT
CGCCGCGACGAACCGCTTTGACGTGCTCGACAGCGCGCTCACTCGACCCG
GCAGATTCGACCGGGTTGTGAGGGTGGAGGTGCCAAATACAGCCGGGCGG
GAGGCGATTCTGAAGGTCCACACCAGGCGAATGAACCTGGCTGACTCGGC
CCTCTTGGGATCAGTGGCCGAACTGACCCCCGGT
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