mRNA_H-paniculata_contig2289.6113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2289.6113.1
Unique NamemRNA_H-paniculata_contig2289.6113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: D7FLT3_ECTSI (tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT3_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 4.180e-120
Identity = 209/370 (56.49%), Postives = 236/370 (63.78%), Query Frame = 1
Query:    1 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVAAGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVDSSMASAPQPSLPPAALSPIEQDDNAAQQSDRVRGDQRGRKDELPATGVSAKLKHVLDATATHKLAVVGAGGGRGDAESDVCSSIESRHGT-VLGESSVVSSGSGEVG----DFSASGVVPKPKISEDTANTTQENAGAASSSVKKIVQGVGLGIVNVVGRRGDIGREKRLVKKGHAPPGVVEEVTCDIIRDEFWDRNPHLLVGVERRR 1095
            +CARQVMSEWSDLVMAFGQSDEFSFLLPASS LYGRRSAKLSTSFVS FSSSFVFFWPKHFPDTPLLYPP+FDAR+VSYPSA+HVRDYF WRQADCHINNLYNTCFW+LVA G SKQDAQVALKGTTSGDKNELLFS F  NYNEIPQRFRKGTTLFRAR  +  A             P  QD  AA       GD+ GR   + +  +SA        TA  +    G    R  A+ +  + +E+  G   + +S     G  E G    D  A          +   +      G   +S K      G  +V VV      GR KRL+KKGHAPPG +EE  CD+IRD+FWDRNPH+L     RR
Sbjct:   56 ECARQVMSEWSDLVMAFGQSDEFSFLLPASSPLYGRRSAKLSTSFVSLFSSSFVFFWPKHFPDTPLLYPPNFDARIVSYPSAQHVRDYFSWRQADCHINNLYNTCFWALVADGVSKQDAQVALKGTTSGDKNELLFSRFDTNYNEIPQRFRKGTTLFRARPTAVAAXXXXXXXETPLRQPSRQDGAAAVDGS---GDKGGRGPPVESGPISATATGGETPTAGRQAGETGVEAPRLAAQ-ETNNRVENNIGVETIPDSRPSEDGKPEAGSEGGDAQAGVAASGAATGKGQGDKRPRGRGKGGASEKAGGAPRGDAVVKVVSCSDGKGRAKRLLKKGHAPPGAIEEDACDLIRDDFWDRNPHILAAGTMRR 421          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A6H5KZK5_9PHAE (tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK5_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 6.230e-103
Identity = 213/467 (45.61%), Postives = 240/467 (51.39%), Query Frame = 1
Query:    1 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSA------------------------------------------------------------------------------------------EHVRDYFGWRQADCHINNLYNTCFWSLVAAGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVDSSMASAPQPSLPPAALSPIEQDDNAAQQSDRVRGDQRGRKDELPATGVSAKLKHVLDATATH-KLAVVGAGGGRGDAESDVCSSIESRHGTV--LGESSVVSS---GSG------EVGDFSASGVVPKPKISEDTANTTQENAGAASSSVKKIVQGVGLGIVNVVGRRGDIGREKRLVKKGHAPPGVVEEVTCDIIRDEFWDRNPHLLVGVERRR 1095
            QCARQVMSEWSDLVMAFGQSDEFSFLLPASS LYGRRSAKLSTSFVS FSSSFVFFWPKHFPDTPLLYPP+FDAR++SYPSA                                                                                          EHVRDYF WRQADCHINNLYNTCFW+LVA G SKQDAQVALKGTTSGDKNELLFS F  NYNEIPQRFRKGTTLFRAR  +  A             P  QD  AA       GD+ GR   +    VSA        TAT  +  + G   G    E+   ++ E+ +     +G  ++  S   G G      E GD  A          +  ++      G   +S K      G  +V VV      GR KRL+KKGHAPPG +EE  CD+IRD+FWDRNPH+L     RR
Sbjct:   79 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSPLYGRRSAKLSTSFVSLFSSSFVFFWPKHFPDTPLLYPPNFDARIISYPSAQASTPVVMLRVFLWHNHYFPLPLVHSGFKGVDGVINDKVLGVKVALRRLEADERSVNPSRAEGDLRAKDIVVDDTIDALKTTVDEEKGAAEHVRDYFSWRQADCHINNLYNTCFWALVADGVSKQDAQVALKGTTSGDKNELLFSRFDTNYNEIPQRFRKGTTLFRARPTAVAAPXXXXXXXXXXRQPSRQDGAAAVDGS---GDKGGRGPPVEGGPVSA--------TATGGETPMAGQQAGETGVEAPTLAAQETNNRVENNIGVETIPDSRRSGDGKPEAGTEGGDAQAGVAASGAATGKGLSDKGPHGRGKGGASEKAGGTPRGDAVVKVVSCSDGKGRAKRLLKKGHAPPGAIEEDACDLIRDDFWDRNPHILAAGTMRR 534          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A836CF12_9STRA (tRNA(His) guanylyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF12_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.010e-62
Identity = 101/166 (60.84%), Postives = 123/166 (74.10%), Query Frame = 1
Query:    1 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVAAGESKQDAQVA--------LKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFR 474
            QCA+ VM EWSD+VMA+GQSDE+SFLLPA S LY RR++KLS+SF S F+SS+VF WPK F D PL   P+FD R ++YP+  HVRDYF WRQADCHINNLYNT FWS+V +G S Q  + A        L GT++ +KNELLF  FGINYN  P+ +RKGT + R
Sbjct:   93 QCAKAVMLEWSDIVMAYGQSDEYSFLLPAWSDLYNRRASKLSSSFASLFASSYVFLWPKFFGDAPLQSAPAFDGRAIAYPTPAHVRDYFAWRQADCHINNLYNTAFWSIVKSGLSTQAREFACERPLLQALAGTSAAEKNELLFKRFGINYNNEPEMYRKGTVICR 258          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A397SEU5_9GLOM (tRNA(His) guanylyltransferase n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SEU5_9GLOM)

HSP 1 Score: 209 bits (531), Expect = 3.240e-62
Identity = 93/162 (57.41%), Postives = 125/162 (77.16%), Query Frame = 1
Query:    1 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVAAGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVD 486
            +CA  VM E  D+++A+GQSDEFSF+L    +LYGRR AK+ ++ VS F+S++VF W K+FPD  L YPPSFD R V YPS  ++RDY  WRQADCHINNLYNTCFW+LV +G+++ +A+  L+GT+S DKNELL+S F INYN++P+ +RKG+ L +  VD
Sbjct:   56 KCAEAVMIEIHDIILAYGQSDEFSFILKKECNLYGRREAKIISTIVSLFTSNYVFHWKKYFPDKELHYPPSFDGRAVQYPSDNNLRDYLSWRQADCHINNLYNTCFWALVHSGKTEAEAENTLRGTSSSDKNELLYSSFNINYNDLPEMYRKGSILIKQEVD 217          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A409V997_9AGAR (tRNA(His) guanylyltransferase n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409V997_9AGAR)

HSP 1 Score: 207 bits (526), Expect = 5.370e-62
Identity = 98/162 (60.49%), Postives = 124/162 (76.54%), Query Frame = 1
Query:    7 ARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVA-AGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVDS 489
            A+ VM E+ D+V+AFG+SDEFSFLL  S+SLY RR +K+ ++  S F+S +VF+WP++FPDTPL YPPSFD R+V YP+ + VRDYF WRQAD HINNLYNT FW+LV   G++  DA   L+GT S +KNE+LFS FGINYN I  RFRKG+ +FR  V S
Sbjct:   58 AKHVMEEFPDIVLAFGESDEFSFLLRKSTSLYNRRESKIVSTLTSLFTSCYVFYWPQYFPDTPLQYPPSFDGRIVLYPTEQLVRDYFAWRQADTHINNLYNTTFWALVQQGGQTTTDAHATLRGTLSKEKNEILFSRFGINYNTIDARFRKGSVIFREEVKS 219          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A7M7NV14_STRPU (tRNA(His) guanylyltransferase n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NV14_STRPU)

HSP 1 Score: 206 bits (525), Expect = 1.770e-61
Identity = 96/157 (61.15%), Postives = 123/157 (78.34%), Query Frame = 1
Query:    1 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVAAGE-SKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTL 468
            + A  VM+E+ D+++A+GQSDE+SF++   ++ YGRR++KL+T+  S F+SSFVF WPK FPD PL YPP+FD R V YPS +++RDY  WRQADCHINNLYNTCFW+L+  G  S ++A+  LKGT SGDKNELLFS F INYN  P+ FRKGTTL
Sbjct:   56 EAATSVMTEFKDIILAYGQSDEYSFVMKKDTTQYGRRASKLATTVSSLFASSFVFLWPKFFPDMPLQYPPAFDGRCVLYPSNKNLRDYLSWRQADCHINNLYNTCFWTLIQRGNCSPKEAEERLKGTVSGDKNELLFSQFDINYNAEPEVFRKGTTL 212          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A1B9GG40_9TREE (tRNA(His) guanylyltransferase n=1 Tax=Kwoniella bestiolae CBS 10118 TaxID=1296100 RepID=A0A1B9GG40_9TREE)

HSP 1 Score: 208 bits (529), Expect = 3.980e-61
Identity = 98/166 (59.04%), Postives = 124/166 (74.70%), Query Frame = 1
Query:    1 QCARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVAAGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVDSSMA 498
            + AR VM E+ D+++AFG+SDE+SFLL  ++ LY RR +K+S+S VS F+SS+VF WP +FPD PL YPPSFD+R V YP    VRDYF WRQAD HINNLYNT FW+LV  G+S  +A   L+GT S DKNELLFS FGINYN +P+++RKG+   R  V S+ A
Sbjct:   56 RAARTVMQEYRDVILAFGESDEYSFLLKKNTKLYNRRRSKISSSIVSLFTSSYVFHWPSYFPDNPLKYPPSFDSRAVMYPGEREVRDYFAWRQADTHINNLYNTAFWALVKDGQSTAEANKTLQGTDSKDKNELLFSNFGINYNNLPEQYRKGSICVRRPVLSADA 221          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: J4GSP1_9APHY (tRNA(His) guanylyltransferase n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4GSP1_9APHY)

HSP 1 Score: 204 bits (518), Expect = 1.130e-60
Identity = 101/171 (59.06%), Postives = 126/171 (73.68%), Query Frame = 1
Query:    7 ARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVA-AGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVDSSMASAPQPS 516
            A+ VM E+ D+ +AFG+SDEFSFL   S++LY RR AK+ T+  S F+SS+V  WP+ FPDTPL YPPSFD R+V YPSA+ VRDYF WRQAD HINNLYNT FW+LV   GE+   A   L+GT SG K+E+L S FG+NYN IP R+RKG+ L R R+ S+ +S  QPS
Sbjct:    5 AQAVMHEYKDICLAFGESDEFSFLFRKSTALYNRRQAKILTTITSLFTSSYVLHWPQFFPDTPLKYPPSFDGRLVVYPSAKEVRDYFAWRQADTHINNLYNTIFWALVQQGGETTAQAHATLRGTVSGTKHEMLHSRFGMNYNSIPTRYRKGSVLIRERI-SAESSISQPS 174          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A5B1QD76_9AGAM (tRNA(His) guanylyltransferase n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1QD76_9AGAM)

HSP 1 Score: 206 bits (524), Expect = 1.280e-60
Identity = 96/166 (57.83%), Postives = 128/166 (77.11%), Query Frame = 1
Query:    7 ARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVA-AGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFRARVDSSMAS 501
            AR++M E++D+ +AFG+SDEFSFLL  S++LY RR++K+ T+  S F+SS+V  WP++FPDTPL YPPSFD R+V YPS + VRDYF WRQAD HINN+YNT FW+LV   G+S ++A   L+GT S  KNE+LFS FGINYN +P+R+RKG+ L R ++  S  S
Sbjct:   58 ARELMEEYTDITLAFGESDEFSFLLRRSTTLYKRRNSKIVTTLTSYFTSSYVLHWPEYFPDTPLRYPPSFDGRLVLYPSEKEVRDYFAWRQADTHINNMYNTVFWALVQQGGQSTKEAHETLRGTVSAQKNEMLFSRFGINYNLLPERYRKGSVLIREQIVESSPS 223          
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Match: A0A5M3MYM2_CONPW (tRNA(His) guanylyltransferase n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MYM2_CONPW)

HSP 1 Score: 204 bits (520), Expect = 1.310e-60
Identity = 96/157 (61.15%), Postives = 118/157 (75.16%), Query Frame = 1
Query:    7 ARQVMSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFFWPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCFWSLVA-AGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTLFR 474
            A+ VM E+ D++++FG+SDEFSFLL  S+ LY RR AK+ T+  S F+S +VF WPKHFPDTPL YPPSFD R+V YPSA  VRDYF WRQ D HINNLYNT FW+LV   G+S   A   LKGT S  K+E+LFS FGINYN +P++F+KG+ L R
Sbjct:   58 AQSVMEEYKDILLSFGESDEFSFLLRKSTQLYNRRHAKILTTLTSYFTSCYVFHWPKHFPDTPLRYPPSFDGRIVQYPSAREVRDYFAWRQVDTHINNLYNTTFWALVQQGGQSTTQAHATLKGTFSKQKHEILFSRFGINYNALPEQFKKGSVLVR 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2289.6113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLT3_ECTSI4.180e-12056.49tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus s... [more]
A0A6H5KZK5_9PHAE6.230e-10345.61tRNA(His) guanylyltransferase n=1 Tax=Ectocarpus s... [more]
A0A836CF12_9STRA3.010e-6260.84tRNA(His) guanylyltransferase (Fragment) n=1 Tax=T... [more]
A0A397SEU5_9GLOM3.240e-6257.41tRNA(His) guanylyltransferase n=1 Tax=Glomus cereb... [more]
A0A409V997_9AGAR5.370e-6260.49tRNA(His) guanylyltransferase n=1 Tax=Panaeolus cy... [more]
A0A7M7NV14_STRPU1.770e-6161.15tRNA(His) guanylyltransferase n=1 Tax=Strongylocen... [more]
A0A1B9GG40_9TREE3.980e-6159.04tRNA(His) guanylyltransferase n=1 Tax=Kwoniella be... [more]
J4GSP1_9APHY1.130e-6059.06tRNA(His) guanylyltransferase n=1 Tax=Fibroporia r... [more]
A0A5B1QD76_9AGAM1.280e-6057.83tRNA(His) guanylyltransferase n=1 Tax=Dentipellis ... [more]
A0A5M3MYM2_CONPW1.310e-6061.15tRNA(His) guanylyltransferase n=1 Tax=Coniophora p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2289contigH-paniculata_contig2289:1965..5183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.0
Seed ortholog evalue8.3e-95
Seed eggNOG ortholog2880.D7FLT3
Preferred nameTHG1
KEGG koko:K10761
Hectar predicted targeting categoryother localisation
GOsGO:0000966,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008192,GO:0008193,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070568,GO:0071704,GO:0090304,GO:0099116,GO:1901360
EggNOG free text desc.tRNAHis guanylyltransferase
EggNOG OGsCOG4021@1,KOG2721@2759
Ec32 ortholog descriptiontRNAHis guanylyltransferase Thg1
Ec32 orthologEc-26_001350.1
EC2.7.7.79
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons5
Model size1098
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2289.6113.1prot_H-paniculata_contig2289.6113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2289 1983..5183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.952676-UTR-H-paniculata_contig2289:1964..19821622929637.952676-UTR-H-paniculata_contig2289:1964..1982Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2289 1965..1982 +
1691480946.3661678-UTR-H-paniculata_contig2289:1964..19821691480946.3661678-UTR-H-paniculata_contig2289:1964..1982Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2289 1965..1982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.9711535-CDS-H-paniculata_contig2289:1982..21191622929637.9711535-CDS-H-paniculata_contig2289:1982..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 1983..2119 +
1691480946.3916311-CDS-H-paniculata_contig2289:1982..21191691480946.3916311-CDS-H-paniculata_contig2289:1982..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 1983..2119 +
1622929637.98853-CDS-H-paniculata_contig2289:2377..24711622929637.98853-CDS-H-paniculata_contig2289:2377..2471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 2378..2471 +
1691480946.4109828-CDS-H-paniculata_contig2289:2377..24711691480946.4109828-CDS-H-paniculata_contig2289:2377..2471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 2378..2471 +
1622929638.0060086-CDS-H-paniculata_contig2289:2708..27961622929638.0060086-CDS-H-paniculata_contig2289:2708..2796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 2709..2796 +
1691480946.4302425-CDS-H-paniculata_contig2289:2708..27961691480946.4302425-CDS-H-paniculata_contig2289:2708..2796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 2709..2796 +
1622929638.0226934-CDS-H-paniculata_contig2289:4368..46091622929638.0226934-CDS-H-paniculata_contig2289:4368..4609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 4369..4609 +
1691480946.443994-CDS-H-paniculata_contig2289:4368..46091691480946.443994-CDS-H-paniculata_contig2289:4368..4609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 4369..4609 +
1622929638.0448222-CDS-H-paniculata_contig2289:4663..51831622929638.0448222-CDS-H-paniculata_contig2289:4663..5183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 4664..5183 +
1691480946.4567506-CDS-H-paniculata_contig2289:4663..51831691480946.4567506-CDS-H-paniculata_contig2289:4663..5183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2289 4664..5183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2289.6113.1

>prot_H-paniculata_contig2289.6113.1 ID=prot_H-paniculata_contig2289.6113.1|Name=mRNA_H-paniculata_contig2289.6113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=360bp
MSEWSDLVMAFGQSDEFSFLLPASSSLYGRRSAKLSTSFVSQFSSSFVFF
WPKHFPDTPLLYPPSFDARVVSYPSAEHVRDYFGWRQADCHINNLYNTCF
WSLVAAGESKQDAQVALKGTTSGDKNELLFSGFGINYNEIPQRFRKGTTL
FRARVDSSMASAPQPSLPPAALSPIEQDDNAAQQSDRVRGDQRGRKDELP
ATGVSAKLKHVLDATATHKLAVVGAGGGRGDAESDVCSSIESRHGTVLGE
SSVVSSGSGEVGDFSASGVVPKPKISEDTANTTQENAGAASSSVKKIVQG
VGLGIVNVVGRRGDIGREKRLVKKGHAPPGVVEEVTCDIIRDEFWDRNPH
LLVGVERRR*
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mRNA from alignment at H-paniculata_contig2289:1965..5183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2289.6113.1 ID=mRNA_H-paniculata_contig2289.6113.1|Name=mRNA_H-paniculata_contig2289.6113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3219bp|location=Sequence derived from alignment at H-paniculata_contig2289:1965..5183+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGTGCCCGCCAGGTGATGAGCGAGTGGTCGGACTTGGTGATGGCCTT CGGACAAAGCGACGAATTCAGCTTCCTTCTCCCTGCATCCAGCTCTTTGT ATGGCAGGCGATCGGCCAAGCTTTCAACTTCTTTCGTTTCGCAATTTTCT TCAAGGTATTTGCACTAGGTTCCGAAGAGTCAGAAATCATAAAGCCAGTG AACCCAGTCCGAGTCTAAAGATCGATTCGTGAATGGAATATTCAAGAGCT TTATCTTTGATGTCGATTAGCAGCTCTCCTCATGAGGAAGGGGGAAATAA TAAATGCTTATTTGCCGCCGTTTAGACTAGTAGACAGCATTCCTCGATCT CTCTCAGTCTAGCTCGGTCGTCATCTCGTATTCCTGTTATTTTGTGACTT GATGTTTTGTCAGCTTCGTGTTCTTCTGGCCTAAGCATTTTCCGGACACA CCCCTACTCTACCCACCCAGCTTCGACGCGCGAGTCGTTTCATATCCTTC AGCTGAGGTGAGAGTAAGGGTACCCAAGTCCGTGACAACTCTACGGCGGA GTGAAGTTTGTTTTTCGTAAGGGCAGCCTTTTATTCCGATGCGGTTCGTG TCTGCATTGCCGTGCGGTAGCTTTCTCGCGCCGACGATTCCGTAGTGAAT GTTAGTGGCACATCTACCACAGGCGTTTTCCCTCTCAAACTGGCGTCCTT GTGTCTTGTCTTCGGTCCTACCGCTGACAATACCACCTGCACAGCACGTA CGCGACTATTTTGGCTGGAGACAGGCGGACTGCCACATCAACAACTTGTA TAACACATGCTTCTGGAGTCTTGTCGCCGCTGGTGAGTGTCTTTAGCCCA CACAAGCACTCTAACACTGTCGGCGTCCATAGGACGTTAAGTTGCGGTGG CTGTTGGTTCCGACTCCTTGTCTCGGCGGTATGTTGTATGTTACCCTACC CCCCAGTCCTTCGGGCGTACACGTCTAGCTTCTCTTTGCCAGGTGCTACC TAGGGGTTCACAGGGTCAGCATGTGAAATGATATGCAGTCTCGATCGCGA ATGCTGTTTCTTTCTGGCTGTTTGTCGTATCTACATTGCAGCGGTGTGGT GGGCAGCGTGAAGGCAGAAGCGGGTTGGGAAGGAACGGCTGTCCCATAGA ACGGACTCTTGATGCGCATCACATATTGGCATGATACCCGAAACTATCCA GTCGCTGCTCCTGGAATTGACATAATGACGGGATACTCGCCCCTGGACCA CTGCCATGCAGTACCGTAGAAATAGTATGCACTGACGGTCATTAAACCTT TGGGGACTGGACATATATGAACTGACAATTTGAGGTCAAAACATGGTTGC GATTTTTCAGCTTTCTTTATATTTCGCCAAGAGAGTGACTTTTCAGACCC GGAAGCCTGGGAAAACACCCGAAATGGTAGTCCACGGTTGACGTATTCGG CATTTTAGCATTTGCCAAGAACTGATGCTTCGTGATATACCTGCTAGGAG TGACAGTCCACATGGTGGCAAACTAACTTTATGCAGGGTGGAAAGATGAC CACAATCTCACGCATCTTGCTGTTGCTCGCCCAATATCGAATCGGTTTCA CTCAATCAAAACACCTGATCTCGTAGACCCAAGCTACGCGCCCATGGGTG GAAACCCAAATACAACATATGTAGTGCGTTGTCCGCTCAACGTAATGGTC TCTACTCGTAGCTCTGAGTTTGCATACAACAGCGTGCCTCACACGCAACG TAGAGGTGTTCAAAATGTCAGCGCTGGTTCCTGTACTGTATGTAGTTCAA TGCGGTCGCGCCTCAAAACCTTCTTGAAGAGTGTAGCTGTTCGTACTATC TGTCTGTACTGTTTGTCTGTATTATCTGTCTATACTATTAATCTGTACTG CCTGCCTGTACTGTAGTTTAGGGCAACTGTCATCTGAGCGTCAATGACGT TGGCATCGTCGTTATACGCTTCCGAGCTTGAAGCGGGCAGATCTTCCCGA ACTATGTGTCCCACACGTGTGTCTAATGCCGGCAGTCTGCGTCGCTTGAA GCTCACTGTTATTTTATGCCGTGGTATATGACGCATAAGTAAGCGCTATA GGGCACTTATTGCACAATACCCGATTTGACTGGGGAACGGACGAGATAGT TTTTCATGTACGGATTGAAGATTCAGATTCGTTTGGGTTTAATGTACGGA CTGTCGTTTTTGGGTGGAATCATTGCACTGGACACATTCCTCTCGAGTGA GGCTCATGATTGATCGAGTAAACATTTCCCCTCTGGCCCTCTTCTAGCTC CCGTTATGTATGGTTGTGAAGGCACATCAAAATATTATAGAGGGAGTTCT TCGCTTACATTATTTCCACTCGCATGATTCTGATCGTGCCCACAACTCTT TCAGGTGAATCCAAGCAAGACGCACAAGTAGCTCTAAAAGGAACGACCTC AGGAGACAAAAATGAACTCTTGTTCTCGGGGTTCGGGATCAACTACAACG AGATACCCCAGCGTTTTCGCAAAGGCACCACATTATTCCGCGCACGTGTG GACTCGTCTATGGCGTCTGCACCACAACCATCTCTGCCACCAGCAGCGCT AAGCCCGATTGAGCAAGATGACAATGCTGCACAGCAAAGCGACCGGTCTC GTAGAGAGGCAGGTGCGATGGGAATTGCCGAGAAGGACAGCAAGAACAGC GTGCGTGGAGATCAGCGTGGTCGGAAGGACGAATTGCCTGCAACAGGAGT GTCCGCGAAGTTAAAGCATGTGTTGGATGCAACTGCAACACATAAACTTG CCGTAGTGGGTGCAGGTGGCGGCCGAGGAGATGCAGAATCAGATGTCTGT TCTTCAATAGAAAGCCGCCATGGGACAGTGTTAGGGGAAAGCTCGGTCGT TTCGTCCGGATCAGGAGAAGTTGGCGACTTTTCGGCCAGTGGCGTGGTGC CGAAACCGAAAATATCGGAGGATACAGCAAATACAACCCAGGAAAATGCT GGCGCGGCATCTTCCAGTGTAAAGAAGATTGTGCAGGGTGTAGGGCTTGG TATCGTGAATGTGGTGGGTAGGCGTGGCGACATCGGCCGGGAAAAACGAT TGGTAAAGAAAGGCCACGCGCCCCCTGGTGTAGTCGAGGAAGTCACATGT GACATCATTCGAGATGAATTTTGGGATCGAAATCCGCACCTTTTGGTGGG GGTCGAGCGCAGAAGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2289:1965..5183+

>mRNA_H-paniculata_contig2289.6113.1 ID=mRNA_H-paniculata_contig2289.6113.1|Name=mRNA_H-paniculata_contig2289.6113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig2289:1965..5183+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGAGTGGTCGGACTTGGTGATGGCCTTCGGACAAAGCGACGAATT
CAGCTTCCTTCTCCCTGCATCCAGCTCTTTGTATGGCAGGCGATCGGCCA
AGCTTTCAACTTCTTTCGTTTCGCAATTTTCTTCAAGATGAGCGAGTGGT
CGGACTTGGTGATGGCCTTCGGACAAAGCGACGAATTCAGCTTCCTTCTC
CCTGCATCCAGCTCTTTGTATGGCAGGCGATCGGCCAAGCTTTCAACTTC
TTTCGTTTCGCAATTTTCTTCAAGCTTCGTGTTCTTCTGGCCTAAGCATT
TTCCGGACACACCCCTACTCTACCCACCCAGCTTCGACGCGCGAGTCGTT
TCATATCCTTCAGCTGAGCTTCGTGTTCTTCTGGCCTAAGCATTTTCCGG
ACACACCCCTACTCTACCCACCCAGCTTCGACGCGCGAGTCGTTTCATAT
CCTTCAGCTGAGCACGTACGCGACTATTTTGGCTGGAGACAGGCGGACTG
CCACATCAACAACTTGTATAACACATGCTTCTGGAGTCTTGTCGCCGCTG
CACGTACGCGACTATTTTGGCTGGAGACAGGCGGACTGCCACATCAACAA
CTTGTATAACACATGCTTCTGGAGTCTTGTCGCCGCTGGTGAATCCAAGC
AAGACGCACAAGTAGCTCTAAAAGGAACGACCTCAGGAGACAAAAATGAA
CTCTTGTTCTCGGGGTTCGGGATCAACTACAACGAGATACCCCAGCGTTT
TCGCAAAGGCACCACATTATTCCGCGCACGTGTGGACTCGTCTATGGCGT
CTGCACCACAACCATCTCTGCCACCAGCAGCGCTAAGCCCGATTGAGCAA
GATGACAATGCTGCACAGCAAAGCGACCGGTGAATCCAAGCAAGACGCAC
AAGTAGCTCTAAAAGGAACGACCTCAGGAGACAAAAATGAACTCTTGTTC
TCGGGGTTCGGGATCAACTACAACGAGATACCCCAGCGTTTTCGCAAAGG
CACCACATTATTCCGCGCACGTGTGGACTCGTCTATGGCGTCTGCACCAC
AACCATCTCTGCCACCAGCAGCGCTAAGCCCGATTGAGCAAGATGACAAT
GCTGCACAGCAAAGCGACCGCGTGCGTGGAGATCAGCGTGGTCGGAAGGA
CGAATTGCCTGCAACAGGAGTGTCCGCGAAGTTAAAGCATGTGTTGGATG
CAACTGCAACACATAAACTTGCCGTAGTGGGTGCAGGTGGCGGCCGAGGA
GATGCAGAATCAGATGTCTGTTCTTCAATAGAAAGCCGCCATGGGACAGT
GTTAGGGGAAAGCTCGGTCGTTTCGTCCGGATCAGGAGAAGTTGGCGACT
TTTCGGCCAGTGGCGTGGTGCCGAAACCGAAAATATCGGAGGATACAGCA
AATACAACCCAGGAAAATGCTGGCGCGGCATCTTCCAGTGTAAAGAAGAT
TGTGCAGGGTGTAGGGCTTGGTATCGTGAATGTGGTGGGTAGGCGTGGCG
ACATCGGCCGGGAAAAACGATTGGTAAAGAAAGGCCACGCGCCCCCTGGT
GTAGTCGAGGAAGTCACATGTGACATCATTCGAGATGAATTTTGGGATCG
AAATCCGCACCTTTTGGTGGGGGTCGAGCGCAGAAGATGACGTGCGTGGA
GATCAGCGTGGTCGGAAGGACGAATTGCCTGCAACAGGAGTGTCCGCGAA
GTTAAAGCATGTGTTGGATGCAACTGCAACACATAAACTTGCCGTAGTGG
GTGCAGGTGGCGGCCGAGGAGATGCAGAATCAGATGTCTGTTCTTCAATA
GAAAGCCGCCATGGGACAGTGTTAGGGGAAAGCTCGGTCGTTTCGTCCGG
ATCAGGAGAAGTTGGCGACTTTTCGGCCAGTGGCGTGGTGCCGAAACCGA
AAATATCGGAGGATACAGCAAATACAACCCAGGAAAATGCTGGCGCGGCA
TCTTCCAGTGTAAAGAAGATTGTGCAGGGTGTAGGGCTTGGTATCGTGAA
TGTGGTGGGTAGGCGTGGCGACATCGGCCGGGAAAAACGATTGGTAAAGA
AAGGCCACGCGCCCCCTGGTGTAGTCGAGGAAGTCACATGTGACATCATT
CGAGATGAATTTTGGGATCGAAATCCGCACCTTTTGGTGGGGGTCGAGCG
CAGAAGATGA
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