mRNA_H-paniculata_contig22884.6112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22884.6112.1
Unique NamemRNA_H-paniculata_contig22884.6112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5KK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK08_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q A+DAVRSG+M++R AA  +G++  S+ RRVK  V +DA+VG  TVL KEEED VED L
Sbjct:   12 QKAIDAVRSGEMSFRVAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEDFVEDVL 71
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5JPC4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.550e-11
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSGQM+ R AA  +G+S+NS+  R+   V +DA+V   TVL+KEEE+ VED L
Sbjct:   26 QKAVDAVRSGQMSVRGAAEAYGLSRNSLHSRLTNKVAIDAKVAPGTVLSKEEEEFVEDVL 85
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5L2N3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.890e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSG+M+ R AA  +G+   S+  RVK  V +DA+VG  TVL+KEEED VED L
Sbjct:   26 QKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVL 85
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5K7B5_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.240e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSG+M+ R AA  +G+   S+  RVK  V +DA+VG  TVL+KEEED VED L
Sbjct:   26 QKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVL 85
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5JMR3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.270e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSG+M+ R AA  +G+   S+  RVK  V +DA+VG  TVL+KEEED VED L
Sbjct:   26 QKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVL 85
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5K1B1_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.780e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   10 AVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            A DAVRSGQ++ R AA  +GV+K+++ RR+   + +DA+VG  TVL+K EED VED L
Sbjct:   31 ACDAVRSGQLSLRAAAKAYGVNKDALSRRLSGAMAMDARVGPETVLSKAEEDAVEDAL 88
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5LAK0_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAK0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.080e-10
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSG+M+ R AA  +G+   S+  RVK  V +DA+VG  TVL+KEEED VED L
Sbjct:   41 QKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVL 100
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5K4U6_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.980e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   10 AVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            A +AVRSG+M+   AA  FG+ ++S++RR+  N  +DA+VG  TV+TK EED VED L
Sbjct:   28 ACEAVRSGRMSQNAAAAAFGLGRSSLQRRLDGNCAMDARVGPGTVMTKAEEDAVEDLL 85
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.990e-10
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSG+M+ R AA  +G+   S+  RVK  V +DA+VG  TVL+KEEED VED L
Sbjct:   26 QKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVL 85
[Close]
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Match: A0A6H5KQE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.000e-10
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 QGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLTKEEEDKVEDTL 183
            Q AVDAVRSG+M+ R AA  +G+   S+  RVK  V +DA+VG  TVL+KEEED VED L
Sbjct:   26 QKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVL 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22884.6112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK08_9PHAE2.610e-1258.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPC4_9PHAE2.550e-1156.67HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5L2N3_9PHAE2.890e-1158.33HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5K7B5_9PHAE4.240e-1158.33HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5JMR3_9PHAE8.270e-1158.33HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5K1B1_9PHAE9.780e-1153.45HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LAK0_9PHAE1.080e-1058.33HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5K4U6_9PHAE2.980e-1051.72HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JH77_9PHAE2.990e-1058.33S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KQE4_9PHAE3.000e-1058.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22884contigH-paniculata_contig22884:1684..1869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.8821986-CDS-H-paniculata_contig22884:1683..18691622929637.8821986-CDS-H-paniculata_contig22884:1683..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22884 1684..1869 -
1691480946.3529153-CDS-H-paniculata_contig22884:1683..18691691480946.3529153-CDS-H-paniculata_contig22884:1683..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22884 1684..1869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22884.6112.1prot_H-paniculata_contig22884.6112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22884 1684..1869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22884.6112.1

>prot_H-paniculata_contig22884.6112.1 ID=prot_H-paniculata_contig22884.6112.1|Name=mRNA_H-paniculata_contig22884.6112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
VQGAVDAVRSGQMTYRQAAPVFGVSKNSIERRVKANVTVDAQVGQPTVLT
KEEEDKVEDTL*
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mRNA from alignment at H-paniculata_contig22884:1684..1869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22884.6112.1 ID=mRNA_H-paniculata_contig22884.6112.1|Name=mRNA_H-paniculata_contig22884.6112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig22884:1684..1869- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAAGGGGCTGTTGATGCGGTGCGCAGTGGTCAGATGACCTACCGCCA
GGCAGCTCCTGTATTTGGAGTCTCCAAAAACAGCATAGAACGCCGGGTGA
AGGCCAACGTGACCGTTGATGCTCAAGTTGGGCAACCCACCGTACTCACC
AAAGAGGAGGAAGATAAGGTCGAAGACACGTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22884:1684..1869-

>mRNA_H-paniculata_contig22884.6112.1 ID=mRNA_H-paniculata_contig22884.6112.1|Name=mRNA_H-paniculata_contig22884.6112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig22884:1684..1869- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAAGGGGCTGTTGATGCGGTGCGCAGTGGTCAGATGACCTACCGCCA
GGCAGCTCCTGTATTTGGAGTCTCCAAAAACAGCATAGAACGCCGGGTGA
AGGCCAACGTGACCGTTGATGCTCAAGTTGGGCAACCCACCGTACTCACC
AAAGAGGAGGAAGATAAGGTCGAAGACACGTTGTAGGTGCAAGGGGCTGT
TGATGCGGTGCGCAGTGGTCAGATGACCTACCGCCAGGCAGCTCCTGTAT
TTGGAGTCTCCAAAAACAGCATAGAACGCCGGGTGAAGGCCAACGTGACC
GTTGATGCTCAAGTTGGGCAACCCACCGTACTCACCAAAGAGGAGGAAGA
TAAGGTCGAAGACACGTTGTAG
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