mRNA_H-paniculata_contig22860.6106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22860.6106.1
Unique NamemRNA_H-paniculata_contig22860.6106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22860.6106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22860contigH-paniculata_contig22860:570..1238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22860.6106.1prot_H-paniculata_contig22860.6106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22860 593..1238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.3889027-UTR-H-paniculata_contig22860:569..5921622929637.3889027-UTR-H-paniculata_contig22860:569..592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22860 570..592 +
1691480946.1677024-UTR-H-paniculata_contig22860:569..5921691480946.1677024-UTR-H-paniculata_contig22860:569..592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22860 570..592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.4000487-CDS-H-paniculata_contig22860:592..6341622929637.4000487-CDS-H-paniculata_contig22860:592..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22860 593..634 +
1691480946.178141-CDS-H-paniculata_contig22860:592..6341691480946.178141-CDS-H-paniculata_contig22860:592..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22860 593..634 +
1622929637.414024-CDS-H-paniculata_contig22860:977..12381622929637.414024-CDS-H-paniculata_contig22860:977..1238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22860 978..1238 +
1691480946.1873598-CDS-H-paniculata_contig22860:977..12381691480946.1873598-CDS-H-paniculata_contig22860:977..1238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22860 978..1238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22860.6106.1

>prot_H-paniculata_contig22860.6106.1 ID=prot_H-paniculata_contig22860.6106.1|Name=mRNA_H-paniculata_contig22860.6106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MDIDCPCGKQRETQGYIQCNGCQAWLHYECTGTNADEAANDTSYKCQDCA
SAATSSSSKKSSNKRKPVFSDDQRKDNDAFDTAPPNPKKQKTGTPGKSKA
I
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mRNA from alignment at H-paniculata_contig22860:570..1238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22860.6106.1 ID=mRNA_H-paniculata_contig22860.6106.1|Name=mRNA_H-paniculata_contig22860.6106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=669bp|location=Sequence derived from alignment at H-paniculata_contig22860:570..1238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGCAGGCCGCGGGTGGGGAGATGGACATCGATTGTCCTTGTGGGAAA
CAGCGCGAAACTCAGGTTAGTCCTCAAGAGCTGTTCCGGGCACATAGCCA
GTGTAGTGCACAATGCGATGCTCCCTCGGCGATGTTGACATGCATTGGGA
GAAGCCAGACCTTGGACAGAGGGTCTGTTGCTAGGAATGAGTAATTTTTG
TACTCTACGATTATGCAGGGAGCACACTTGGACCCTGAAGCATGTAAACC
TATTTCAAGAAACGACCACGACACCGTTAGTCAAAACCAAAACGCTGAAG
ACGAAGTATAGTGAATAAATATCCCACATCCCCCAAGAACAATGACCTCA
CCTCACCGGTATTATATTCCCGCGGATTCGGCTTGCTAATGTCGTGTTCG
ACGCGCAGGGCTACATCCAGTGCAACGGGTGCCAGGCCTGGCTCCACTAC
GAGTGCACCGGCACCAACGCGGACGAAGCGGCGAACGACACCTCGTACAA
GTGCCAAGACTGCGCATCCGCTGCTACTTCATCATCCTCCAAGAAATCCT
CCAACAAGAGGAAACCCGTGTTCTCTGACGACCAGCGGAAAGACAACGAC
GCGTTCGACACCGCACCCCCTAACCCCAAAAAGCAAAAGACCGGCACCCC
AGGAAAGTCAAAGGCTATT
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Coding sequence (CDS) from alignment at H-paniculata_contig22860:570..1238+

>mRNA_H-paniculata_contig22860.6106.1 ID=mRNA_H-paniculata_contig22860.6106.1|Name=mRNA_H-paniculata_contig22860.6106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig22860:570..1238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATCGATTGTCCTTGTGGGAAACAGCGCGAAACTCAGATGGACAT
CGATTGTCCTTGTGGGAAACAGCGCGAAACTCAGGGCTACATCCAGTGCA
ACGGGTGCCAGGCCTGGCTCCACTACGAGTGCACCGGCACCAACGCGGAC
GAAGCGGCGAACGACACCTCGTACAAGTGCCAAGACTGCGCATCCGCTGC
TACTTCATCATCCTCCAAGAAATCCTCCAACAAGAGGAAACCCGTGTTCT
CTGACGACCAGCGGAAAGACAACGACGCGTTCGACACCGCACCCCCTAAC
CCCAAAAAGCAAAAGACCGGCACCCCAGGAAAGTCAAAGGCTATTGGCTA
CATCCAGTGCAACGGGTGCCAGGCCTGGCTCCACTACGAGTGCACCGGCA
CCAACGCGGACGAAGCGGCGAACGACACCTCGTACAAGTGCCAAGACTGC
GCATCCGCTGCTACTTCATCATCCTCCAAGAAATCCTCCAACAAGAGGAA
ACCCGTGTTCTCTGACGACCAGCGGAAAGACAACGACGCGTTCGACACCG
CACCCCCTAACCCCAAAAAGCAAAAGACCGGCACCCCAGGAAAGTCAAAG
GCTATT
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