mRNA_H-paniculata_contig2286.6105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2286.6105.1
Unique NamemRNA_H-paniculata_contig2286.6105.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2286.6105.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 3.830e-72
Identity = 117/131 (89.31%), Postives = 125/131 (95.42%), Query Frame = 1 
Query:   88 QRRIFLRIHKFVFQKELAMHFSMCILSIAIPFSLSGSPWLAAIPLSVWCFYNAMFVVGAKRAGAVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVLIAITLTAAKLGGPPLCLSSCHACLGSWKHAH 480
            +RR FLRIHKFVFQKELA+HFSMCILSIAIPFSLSGSPWLAAIP+ VWCFYNAMFV+GAKRA  VLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSV+IA+TLTAA+LGGPPLC+SSC  CLGSWKHAH
Sbjct:  120 RRRFFLRIHKFVFQKELALHFSMCILSIAIPFSLSGSPWLAAIPVCVWCFYNAMFVMGAKRASTVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVVIAVTLTAARLGGPPLCISSCRTCLGSWKHAH 250
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BLAST of mRNA_H-paniculata_contig2286.6105.1 vs. uniprot
Match: A0A7S3M8A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8A9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.900e-36
Identity = 73/166 (43.98%), Postives = 104/166 (62.65%), Query Frame = 1 
Query:   91 RRIFLRIHKFVFQKELAMHFSMCILSIAIPFSLSGSPWLAAIPLSVWCFYNAMFVVGAKRAGAVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVLIAITLTAAKLGGPPLCLSSCHACLGSWKHAHLVALSGEAPPLVTSV---------PIASSRDGVRGR 561
            ++  LR+HKF FQ ELA+H  +CI+S+A PF  +G    + +P+SVW FYN +F++G + +  V+P F R K SF   +EEF  P+L+PVLS+SFL V++++ +T  +LGGPPLC   C  CL +WKH+  + LS  A  LV  V         PI S  D + GR
Sbjct:   55 KKFSLRVHKFAFQWELAIHLVVCIISLA-PFFFTGRRVFSLLPISVWLFYNVLFLIGPQHSNKVIPRFGRIKNSFKNNIEEFFSPKLLPVLSISFLCVVLSLAVTGHRLGGPPLCYHPCGVCLATWKHS--IPLSAAAAALVARVDPLMQPLVTPIDSPYDPLVGR 217
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BLAST of mRNA_H-paniculata_contig2286.6105.1 vs. uniprot
Match: A0A482RT25_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT25_9ARCH)

HSP 1 Score: 130 bits (327), Expect = 8.340e-34
Identity = 61/129 (47.29%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:   91 RRIFLRIHKFVFQKELAMHFSMCILSIAIPFSLSGSPWLAAIPLSVWCFYNAMFVVGAKRAGAVLPGFDRFKRSFVAAMEEFLPPRLVPVLSLSFLSVLIAITLTAAKLGGPPLCLSSCHACLGSWKHA 477
            R+  LR+HKF FQ +L +HF +C+LS+  PF  SG+   A +PLSVW FY+ +F++   +A  V+PGF + K SF + +EEF  P+L+PVLS+SFL V +++ +T   LGGPPLC   C  CL SW ++
Sbjct:   27 RKFSLRVHKFSFQWDLVLHFLICLLSLC-PFFFSGNRLFALLPLSVWVFYHVLFILNPNQANLVIPGFGKLKHSFKSTIEEFFSPKLLPVLSISFLLVALSLGVTGHTLGGPPLCYHPCGTCLSSWTNS 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2286.6105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRR0_ECTSI3.830e-7289.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3M8A9_9STRA3.900e-3643.98Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RT25_9ARCH8.340e-3447.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2286contigH-paniculata_contig2286:14435..15082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003500.1
Exons1
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.3482113-CDS-H-paniculata_contig2286:14434..150821622929637.3482113-CDS-H-paniculata_contig2286:14434..15082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2286 14435..15082 +
1691480946.1478355-CDS-H-paniculata_contig2286:14434..150821691480946.1478355-CDS-H-paniculata_contig2286:14434..15082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2286 14435..15082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2286.6105.1prot_H-paniculata_contig2286.6105.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2286 14435..15082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2286.6105.1

>prot_H-paniculata_contig2286.6105.1 ID=prot_H-paniculata_contig2286.6105.1|Name=mRNA_H-paniculata_contig2286.6105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
GRGAGGGGGGGGGGNSGNKRYGGGGGVARQRRIFLRIHKFVFQKELAMHF
SMCILSIAIPFSLSGSPWLAAIPLSVWCFYNAMFVVGAKRAGAVLPGFDR
FKRSFVAAMEEFLPPRLVPVLSLSFLSVLIAITLTAAKLGGPPLCLSSCH
ACLGSWKHAHLVALSGEAPPLVTSVPIASSRDGVRGRGLSWGIVHDRQLD
SRLTGSREWGADVRAG
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mRNA from alignment at H-paniculata_contig2286:14435..15082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2286.6105.1 ID=mRNA_H-paniculata_contig2286.6105.1|Name=mRNA_H-paniculata_contig2286.6105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig2286:14435..15082+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGGGGTGCTGGAGGCGGGGGGGGGGGCGGCGGCGGCGGAAATAGTGG
CAACAAGAGGTACGGTGGGGGTGGAGGGGTGGCCCGCCAGCGTCGCATTT
TTCTGCGCATCCACAAGTTCGTGTTTCAGAAAGAGCTGGCGATGCACTTT
TCCATGTGCATCTTGAGCATCGCCATACCTTTTTCTTTGTCGGGCTCGCC
ATGGCTGGCAGCCATTCCACTGTCCGTGTGGTGTTTCTACAACGCCATGT
TCGTCGTGGGCGCCAAAAGGGCGGGCGCCGTGCTCCCGGGCTTCGACCGC
TTCAAACGGAGCTTCGTGGCAGCGATGGAAGAGTTCCTCCCGCCGCGACT
CGTCCCTGTCTTGTCCCTCTCTTTCTTGAGTGTGCTCATCGCAATCACGC
TAACCGCGGCCAAGCTAGGAGGCCCGCCCCTATGCCTCTCCTCTTGCCAT
GCGTGTCTCGGAAGCTGGAAGCACGCGCATCTCGTGGCTCTATCTGGAGA
AGCGCCTCCATTGGTGACAAGCGTTCCCATCGCTTCTTCCCGAGATGGCG
TTAGGGGGCGTGGTCTCAGCTGGGGAATAGTGCATGATCGCCAGCTGGAT
AGCAGACTGACGGGCTCGAGAGAATGGGGTGCAGACGTGCGGGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2286:14435..15082+

>mRNA_H-paniculata_contig2286.6105.1 ID=mRNA_H-paniculata_contig2286.6105.1|Name=mRNA_H-paniculata_contig2286.6105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig2286:14435..15082+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGGGGTGCTGGAGGCGGGGGGGGGGGCGGCGGCGGCGGAAATAGTGG
CAACAAGAGGTACGGTGGGGGTGGAGGGGTGGCCCGCCAGCGTCGCATTT
TTCTGCGCATCCACAAGTTCGTGTTTCAGAAAGAGCTGGCGATGCACTTT
TCCATGTGCATCTTGAGCATCGCCATACCTTTTTCTTTGTCGGGCTCGCC
ATGGCTGGCAGCCATTCCACTGTCCGTGTGGTGTTTCTACAACGCCATGT
TCGTCGTGGGCGCCAAAAGGGCGGGCGCCGTGCTCCCGGGCTTCGACCGC
TTCAAACGGAGCTTCGTGGCAGCGATGGAAGAGTTCCTCCCGCCGCGACT
CGTCCCTGTCTTGTCCCTCTCTTTCTTGAGTGTGCTCATCGCAATCACGC
TAACCGCGGCCAAGCTAGGAGGCCCGCCCCTATGCCTCTCCTCTTGCCAT
GCGTGTCTCGGAAGCTGGAAGCACGCGCATCTCGTGGCTCTATCTGGAGA
AGCGCCTCCATTGGTGACAAGCGTTCCCATCGCTTCTTCCCGAGATGGCG
TTAGGGGGCGTGGTCTCAGCTGGGGAATAGTGCATGATCGCCAGCTGGAT
AGCAGACTGACGGGCTCGAGAGAATGGGGTGCAGACGTGCGGGCGGGGGG
ACGGGGTGCTGGAGGCGGGGGGGGGGGCGGCGGCGGCGGAAATAGTGGCA
ACAAGAGGTACGGTGGGGGTGGAGGGGTGGCCCGCCAGCGTCGCATTTTT
CTGCGCATCCACAAGTTCGTGTTTCAGAAAGAGCTGGCGATGCACTTTTC
CATGTGCATCTTGAGCATCGCCATACCTTTTTCTTTGTCGGGCTCGCCAT
GGCTGGCAGCCATTCCACTGTCCGTGTGGTGTTTCTACAACGCCATGTTC
GTCGTGGGCGCCAAAAGGGCGGGCGCCGTGCTCCCGGGCTTCGACCGCTT
CAAACGGAGCTTCGTGGCAGCGATGGAAGAGTTCCTCCCGCCGCGACTCG
TCCCTGTCTTGTCCCTCTCTTTCTTGAGTGTGCTCATCGCAATCACGCTA
ACCGCGGCCAAGCTAGGAGGCCCGCCCCTATGCCTCTCCTCTTGCCATGC
GTGTCTCGGAAGCTGGAAGCACGCGCATCTCGTGGCTCTATCTGGAGAAG
CGCCTCCATTGGTGACAAGCGTTCCCATCGCTTCTTCCCGAGATGGCGTT
AGGGGGCGTGGTCTCAGCTGGGGAATAGTGCATGATCGCCAGCTGGATAG
CAGACTGACGGGCTCGAGAGAATGGGGTGCAGACGTGCGGGCGGGG
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