mRNA_H-paniculata_contig2286.6104.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2286.6104.1
Unique NamemRNA_H-paniculata_contig2286.6104.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2286.6104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2286contigH-paniculata_contig2286:12434..14188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size509
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2286.6104.1prot_H-paniculata_contig2286.6104.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2286 12688..14188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.2565436-UTR-H-paniculata_contig2286:12433..126871622929637.2565436-UTR-H-paniculata_contig2286:12433..12687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2286 12434..12687 +
1691480946.1045647-UTR-H-paniculata_contig2286:12433..126871691480946.1045647-UTR-H-paniculata_contig2286:12433..12687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2286 12434..12687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.2722292-CDS-H-paniculata_contig2286:12687..127451622929637.2722292-CDS-H-paniculata_contig2286:12687..12745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2286 12688..12745 +
1691480946.1147141-CDS-H-paniculata_contig2286:12687..127451691480946.1147141-CDS-H-paniculata_contig2286:12687..12745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2286 12688..12745 +
1622929637.2923763-CDS-H-paniculata_contig2286:13991..141881622929637.2923763-CDS-H-paniculata_contig2286:13991..14188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2286 13992..14188 +
1691480946.132709-CDS-H-paniculata_contig2286:13991..141881691480946.132709-CDS-H-paniculata_contig2286:13991..14188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2286 13992..14188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2286.6104.1

>prot_H-paniculata_contig2286.6104.1 ID=prot_H-paniculata_contig2286.6104.1|Name=mRNA_H-paniculata_contig2286.6104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MLTAPLLSGVRKRIRTKSSDGGDGGQWCAEQVFSGMRRNYARSSYWDAES
DHRSDREHNNGILSPRSPLAGDHLLGSGGSGGGGG
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mRNA from alignment at H-paniculata_contig2286:12434..14188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2286.6104.1 ID=mRNA_H-paniculata_contig2286.6104.1|Name=mRNA_H-paniculata_contig2286.6104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1755bp|location=Sequence derived from alignment at H-paniculata_contig2286:12434..14188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCCCTCCATGATAACCAACTGCTGTGCTGCTGTAGGACTACTGGAGGC
ACCGTCTCCGTGGAGAAGCCGCAGCACAGAAGCTATTCTGTTAGAGCATA
ACTGACGATAATCCTAACAATTTTTGTGGATCCTCCATGCTAAATCGCAA
TACAGCACAGGCCCCCAATACCAGCTAAATAGAATATTCAACCACATCCG
GGCACTGGGGATTTCTCCGGGGAGTGCTACTGCAACGTAGGTGGGAAGGA
ATTGATGTTAACGGCACCCCTTCTGTCTGGCGTGAGAAAGCGAATACGGA
CGAAGAGTTCAGGTGTGAGCCGGTCTTATCATAGAGACACCAATGTATAT
CAAGTATCGGGCGTCAGTTTTTTTCCACAGACCTGAGAGTTAGCTGTGAC
CCATATTCACCGCTCCTATAATTGTGATGAGAGTAAACAGACCAGCTCCA
ATTCGAAGATTTACACCTGCTCACACAAGATTCGCGCATATTTCAGATCT
ACGTGGTTATGTCACAATTCAGCAAATCCTTGCAAGCATGACCCTCGCAT
GCTTGGCTCTACTGGTTCGTCCATCGCAAGCCTCTCCATCTTGTGAGAAA
ACTCCACGCAGCGCTGTATATGATAGTATATTGCTCTTGTAATCAACCGC
AGTGAATGTATGGGCGGTGACTAACCGAAAAACCCTCTCTGATATATCTT
GATCCTTTCTTTTTTTATTCAAGAGAAAACTATCATAAATCCGTCAAATC
AATTCTGAGATATTGTGAATGGTGTGGGACAAATGCACTCGTGGTCATGG
TCTTATATTGGGCTGGAAGAAGCTTGTGTGCATCTTGGCAAAAAAGAAAT
GTTGAAACGAGAACATTTTGTAGCCATCTGCCCAAGTCGGCTCGGTTGAA
ACCAAGGTTGTGTCAAGTGGATGATGTACAGCACTGGTTATTTTCCACGT
GCTTGCTCGATTAAGGAGGGGTTTCGTCTGCGTACCCCAATACCTCTCTT
AAATCTGAAAAAAATGTGATACGACAATTTAACATCTCTTGAGCCCGTAG
ACCTGCTGTACATGAGCGTGTTTTTACCTCTCTTACTGATGCCAGATTGG
GCTATTTCGGAACAGAAAAGGCTAACAACAACGTGAAGCGCTGTACCGCA
GTCATTGCGGGCAAAACCATGCCAACTGCCGGTCTGCTAATATATATACT
GTCTGTCTGAACAGCAGCGGCCCCCTGCCCCTGTTATCATATCATACATG
GGCGTATACTTGCACTGTGAGATTGGGATGGGGATTTAATGAAGAAACGA
TGCTATTGGTACAAGAGAGGGTTCAATGTTCACAGTAGAGCGCGGAAACA
TGGAATAGGCGAACACCAAATAGACGAACAGAAAGCATTGTGTGCAGCTT
GCCGTTGTTCAATATTTTCAAATGTCCCCAGATTCAATATTCTAACTCTC
TTTTCCAGCCTCACGCGGTGTATGCACTTCATATTATTACATTTTTCACT
GTGTGTACTATTGTAAAGACGATAATACAATTTTGCTGTATAAACGCCCT
CTGTTCAGACGGAGGTGACGGCGGTCAGTGGTGCGCAGAGCAAGTCTTCA
GCGGGATGCGACGTAACTACGCTCGTTCCTCCTACTGGGACGCAGAGTCA
GACCACCGATCAGACAGAGAACACAACAATGGCATTTTATCGCCTCGCTC
TCCCTTGGCCGGCGATCACCTGCTCGGCAGCGGTGGGAGCGGCGGCGGGG
GCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2286:12434..14188+

>mRNA_H-paniculata_contig2286.6104.1 ID=mRNA_H-paniculata_contig2286.6104.1|Name=mRNA_H-paniculata_contig2286.6104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig2286:12434..14188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAACGGCACCCCTTCTGTCTGGCGTGAGAAAGCGAATACGGACGAA
GAGTTCAGATGTTAACGGCACCCCTTCTGTCTGGCGTGAGAAAGCGAATA
CGGACGAAGAGTTCAGACGGAGGTGACGGCGGTCAGTGGTGCGCAGAGCA
AGTCTTCAGCGGGATGCGACGTAACTACGCTCGTTCCTCCTACTGGGACG
CAGAGTCAGACCACCGATCAGACAGAGAACACAACAATGGCATTTTATCG
CCTCGCTCTCCCTTGGCCGGCGATCACCTGCTCGGCAGCGGTGGGAGCGG
CGGCGGGGGCGGGACGGAGGTGACGGCGGTCAGTGGTGCGCAGAGCAAGT
CTTCAGCGGGATGCGACGTAACTACGCTCGTTCCTCCTACTGGGACGCAG
AGTCAGACCACCGATCAGACAGAGAACACAACAATGGCATTTTATCGCCT
CGCTCTCCCTTGGCCGGCGATCACCTGCTCGGCAGCGGTGGGAGCGGCGG
CGGGGGCGGG
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