mRNA_H-paniculata_contig22853.6102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22853.6102.1
Unique NamemRNA_H-paniculata_contig22853.6102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22853.6102.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.180e-18
Identity = 125/291 (42.96%), Postives = 138/291 (47.42%), Query Frame = 1 
Query:   10 SQGYGYS----------HQRYEDKHHMHQPTGNRRWGSQEPTPKRPASK---QTGWRGRQXXXXXXXXQP---------------AAQPKASYYAHAQPTPAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVAPQ------TPHNFQHPGYAPPPT-----------------------VPPGGGGAPGYPSMDSLRSKLANALLQTKGTPAPPPYG--YVYPAQ-----PQQPAQAGVYYASQPPTLQQPVAAPAPAPGYPNQHIRFDEQGRPTWGG 690
            SQGYGY           H  YED HHMHQPTG+RRWGSQEPTPKR + +     G +GR     XXXX                    P+  Y     P  A  XXXXXXXXXXXXXXXXXXXXXXXXX              + APQ        H+FQHPGY                             PPG   A G+P+MDSLRSKLANALLQTK      P G  Y YP Q     PQQP        +QP        A A   GYP Q+IR+D +G PTWGG
Sbjct: 1078 SQGYGYQQGGRSXXXXYHGGYEDMHHMHQPTGSRRWGSQEPTPKRNSGRVGRNGGNQGRNHQGRXXXXXXXXXXXXXXXXXXXXXVPXPQGYYGQAVPPLVAAXXXXXXXXXXXXXXXXXXXXXXXXXXPAPVVSAVAPTAYYVTAPQQAPQPVVAHSFQHPGYVQQQPQXXXXXXXXXXXXXXXXXXXXXXXPPG---AAGFPTMDSLRSKLANALLQTKAPTTAAPQGAFYAYPPQQGAPIPQQPHAGAAVPVTQP--------AAAAGTGYPGQNIRYDAKGNPTWGG 1357
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BLAST of mRNA_H-paniculata_contig22853.6102.1 vs. uniprot
Match: D7FVH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH8_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.150e-15
Identity = 121/267 (45.32%), Postives = 133/267 (49.81%), Query Frame = 1 
Query:   46 DKHHMHQPTGNRRWGSQEPTPKRPASK---QTGWRGRQXXXXXXXXQPAA----QPKASYYAHAQPTP--------------AVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVAPQ------TPHNFQHPGYAPPPT------------------VPPGGGGAPGYPSMDSLRSKLANALLQTKGTPAPPPYG--YVYPAQ-----PQQPAQAGVYYASQPPTLQQPVAAPAPAPGYPNQHIRFDEQGRPTWGG 690
            D HHMHQPTGNRRWGSQEPTPKR + +     G +GR  XXXXXXX        QP   +Y H                   A  XXXXXXXXXXXXXXXXXXXXXXXXX              + APQ        H+FQHPGY                        PPG   A G+P+MDSLRSKLANALLQTK      P G  Y YP Q     PQQP        +QP        A A   GYP Q+IR+DE+G  TWGG
Sbjct:  226 DMHHMHQPTGNRRWGSQEPTPKRNSGRGGRNGGNQGRNHXXXXXXXXXXXXXXHQP---HYQHQXXXXXXXGYXXXXXXXLVAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPVVSTVAPTAYYVTAPQQAPQPVAAHSFQHPGYVQQQPQLLQXXXXXXXXXXXXXXXPPG---AAGFPTMDSLRSKLANALLQTKAPTTAAPQGAFYAYPPQQGAPIPQQPHAGAAVPVTQP--------AAAAGTGYPGQNIRYDEKGNLTWGG 478
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22853.6102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF35_9PHAE1.180e-1842.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVH8_ECTSI8.150e-1545.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22853contigH-paniculata_contig22853:372..3911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001130.1
Exons4
Model size690
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22853.6102.1prot_H-paniculata_contig22853.6102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22853 372..3911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.977893-CDS-H-paniculata_contig22853:371..4931622929636.977893-CDS-H-paniculata_contig22853:371..493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 372..493 +
1691480945.9720397-CDS-H-paniculata_contig22853:371..4931691480945.9720397-CDS-H-paniculata_contig22853:371..493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 372..493 +
1622929636.9936132-CDS-H-paniculata_contig22853:1274..15181622929636.9936132-CDS-H-paniculata_contig22853:1274..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 1275..1518 +
1691480945.9817739-CDS-H-paniculata_contig22853:1274..15181691480945.9817739-CDS-H-paniculata_contig22853:1274..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 1275..1518 +
1622929637.0106475-CDS-H-paniculata_contig22853:2781..29311622929637.0106475-CDS-H-paniculata_contig22853:2781..2931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 2782..2931 +
1691480945.9910002-CDS-H-paniculata_contig22853:2781..29311691480945.9910002-CDS-H-paniculata_contig22853:2781..2931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 2782..2931 +
1622929637.0279646-CDS-H-paniculata_contig22853:3737..39111622929637.0279646-CDS-H-paniculata_contig22853:3737..3911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 3738..3911 +
1691480945.9999816-CDS-H-paniculata_contig22853:3737..39111691480945.9999816-CDS-H-paniculata_contig22853:3737..3911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22853 3738..3911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22853.6102.1

>prot_H-paniculata_contig22853.6102.1 ID=prot_H-paniculata_contig22853.6102.1|Name=mRNA_H-paniculata_contig22853.6102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
GHGSQGYGYSHQRYEDKHHMHQPTGNRRWGSQEPTPKRPASKQTGWRGRQ
QQQQQYHHQPAAQPKASYYAHAQPTPAVPAIYAPPPAAPTAYPGYYQAPV
AAPAPAPPGVYYPVAAPVLVAPQTPHNFQHPGYAPPPTVPPGGGGAPGYP
SMDSLRSKLANALLQTKGTPAPPPYGYVYPAQPQQPAQAGVYYASQPPTL
QQPVAAPAPAPGYPNQHIRFDEQGRPTWGG
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mRNA from alignment at H-paniculata_contig22853:372..3911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22853.6102.1 ID=mRNA_H-paniculata_contig22853.6102.1|Name=mRNA_H-paniculata_contig22853.6102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3540bp|location=Sequence derived from alignment at H-paniculata_contig22853:372..3911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACATGGCAGTCAAGGGTACGGCTACAGCCATCAGCGGTACGAGGACAA
GCATCACATGCACCAACCTACGGGCAACCGTCGCTGGGGTTCCCAGGAGC
CAACACCGAAGCGCCCGGCAAGGTGCGTTGTTTTTATTTTCGAGTATTAG
TGTTTAGCTGGTGACAGGGGCACTTTTTGTGCATGTAACCTTATTGCTGT
AATTTTGCTTATGAATATTGTTTGTGTGTGTCCCAGATCAAGTGAGTACG
ACGCACGATGAACGGGTTTTTTTTGGCCCCCACTCGATTACATTTAGTGT
TTTATCATTAAAGTAGATATATGTTATTTTTGGTCTTGTCCGAACAGAGA
AGATAATGAGAATTGTCCTCTCGAAGAACCCTACCTGCCCGAATCGCCCG
AATCGACGACAAGTATATATACATATATATATATGATGTATTTGGGAAGC
ATGTTTGTTTTTTTTTTAATAATTTCTGCTTCAAAAGGATTGTTGGTTGA
TTGTGTCGTATTATGAAAAAAAAAATGGTTGTGATGGAAAATTTATGTTG
GGTTCTGCTCCCCATATTTTTTCGTACGGCGGCGGGCAATTTAGGCGGGC
GGGGTCGGATTCTTAGGTTAAAAATCCAGTTCGTCCTGCACACCGGATCC
GCACCCTATCTTACAAGTAGGCCCCATCGGCCTGTGCACTTTTGTTGAGG
CGTGTTGAGTGCGGCATGGCCTCCAGTTGGCTCCGTTATCCATATCTCAG
TTGCTCATTTCGCCGTCCAGTTGTAGTCGTGCACATTTTTGTATGTGTAT
CGTGTTCTCAAAGCCGGATAGTTTTGCGGCACATGTGCACACAAATATTT
GGTCTGATTTTTGCCGGTATTTATTCTCACCCCTCTGTTTCCGTTTCCCC
CAGCAAACAAACAGGATGGCGTGGGCGTCAGCAGCAGCAGCAGCAATACC
ACCATCAACCCGCAGCCCAGCCTAAGGCGTCGTACTATGCTCACGCCCAG
CCGACGCCAGCTGTTCCGGCGATATATGCGCCTCCCCCAGCGGCTCCGAC
AGCGTACCCGGGGTATTATCAGGCCCCCGTGGCGGCGCCAGCACCAGCGC
CGCCTGGGGTGTATTACCCGGTCGCCGCACCGGTGCTCGTGGCGCCTGTA
CAGCCTGTTCAACAGGTATTCTTTTGGTTGTCTTGACCAAAGGCGTTTGT
TGACTGCTTGTAGCGCCTGGTGGACCTGAATTGCTAGTGTTGATGGTAAG
TAAGACGAGATGATCTCCTACTCTGTGTGAAATACGTGATTGTGTTGGGT
GCTGTTGGGTGCCAGAGAGAGAGAAAGAAAGAGAAAACGAGAAGGCTGTG
TTGTGTTTATTCGTTTGAATTCTTAATCGGGGTTTGTTTGAACTCTGTCG
ATGTCTAGGTGTTAGTGCGGTGTCAGCTGATGAAGAGTTTTTTTTACGTG
TGTTTTGGCGTGACATCATTCTTGTTGTTGTCTTCGTTGTTGCTGTTTTC
TTGTAGCAGGCATGGTTTAAACAGATCCGCTGCGGTACGGTAGGTTGTGG
AAATTCTCTCTGTGCGCTCTTGTGTTTTCCTTCCAGTGCTGTGTGGCTGC
CTTTCGTTTTTTATCCCCATCTCTTGAACGTAACCCCCTTTATTGATTTG
TTTTAGCTGATTCGTGTATCACACCTTCAGGACAATATTACGAATACTTG
CATATAGTATTGACAAAAAACCGGAAAGTATTCGCCATTGATTTTCAAAA
TATTCCAACACACATGGAATAAAGTACCCATACCTGTCCATTCGATTTGC
AAATATTCGTATGTTTTCGGGGGAGTGAAGTGTATACAATGCGTAAAAGC
TTAACTGGATTAGCTCAACATGGGAACAGTCGAGTTACATTATGAGGTTC
ATTTGTGGATATAACCAAGTCGTCTAGCGGGTTGAATATGTCGGGCATTT
GTCCATATTTGTTTCGGTTATTTTATAGTCATGCTTCCACAGTAATTTAC
GCATATCTGCTTGTGCTTTTGACTTGCTCTTTACTCTAGGGTAGGTTTTT
CAAACCATACCTTCAAAGTGAATAATGCTGTCATGCTGGTGAGGCTGTCC
TTGGCAACTGACGCGTGTGATGATGTCGCTAATGCAGCAGTTGCTGGCAG
AGTTTTTGCTCCTGCATGAAGTGTGCTACTAGTTATCTAGTAACTGTTGC
GTGATGTTGCTCTTACGTATTATGTATGTATCCCTCCCCCTCCTCGCTCC
ATTACAGCTCTTCTGTAAGTATCACTCTGAGCCGTGTTGCACATAGCACA
CCACCACAGCTTGCAGGTCATATCGTAATTTAGTTGGCGTGTAAGCGTCT
TCGCTAGCAACCGAACGCGATCACAACATCCGCCCTTCTCTGACTGTGCA
TCTTCCTCAGCAGACTCCCCACAACTTCCAGCATCCGGGCTATGCTCCCC
CGCCCACGGTGCCCCCTGGCGGGGGAGGGGCGCCGGGATACCCATCGATG
GATTCTTTACGATCTAAGCTGGCGAACGCGTTGTTGCAGACGAAAGGTAC
ACCTGCTCCAGTGGCTCAGGTACGCCGAAAACGTCGTCGTTGTCGTCATC
GTCGCTGTCGTCATAGTCGTTGTCGTTTTGAAAAGTTTTTTTTTTTTTTT
CATGTGTATCTTGTGTGTCTTGTGTGTCTCACCGGTACCCCCAAACGGAT
AATTCCGGGTCGATATGTCGAATCTTGGAGAGAACTTGCGAGCAAGCCAT
TTGTTCATGTGTGGTGTGCTGTCCCAGAGATTAAAGTTGCTCAAGTAGAG
ATGGTAATTATTTGTGCCGATATGAGACACGTCGTGTCAAGCCGATGAAG
CGATGAACGTTCTTTTTCCAAGGGCTCATCTGTCGTTCACCGCTTCATCG
GCTTGAGGGGATGGGTAAAGATCTGTCGGTTCATAACAAGGAAAGTTGAA
CTTCGTTCCTCTCGGTCTGTTGGGTGCTTCACTTGAAATGGTGCTAAATT
TGCGAGTCTAGCGAGCCACGGGGCGAGACAGTATCCCTACCGCTGGCGTC
CATTGTCGTGACCTGCCTAGTGGTGATAAGCTGAGGTCGAGATGGGCATT
TCAGAACCCTGTTTCAAATGCTGTATTTTCTCGACTAACGTCTGGAGATG
AATCTTGATGGACGTTGTGTCTAAGTGCGAGGGAGGGCAAGGAGTCGTGA
AGCTGACGTTTGTGCTCTGATTGGACAACTGTATGTTGACTGCAGGCTAC
AATGGGCACTGTCAAGCAACCATTATTATTATTTTTTGAAATGATAAGTT
ATAACTAGTTCCTCCAACCCCCCGCGCGCACTCCCGCCCTAAATCGCCTG
CTCACTGGCTCCACAGCCTCCCTACGGATACGTGTATCCAGCGCAACCGC
AACAACCTGCGCAAGCAGGCGTGTACTACGCTAGCCAACCGCCAACCTTA
CAACAACCTGTCGCTGCGCCGGCGCCGGCCCCGGGCTACCCGAATCAACA
CATCAGATTTGATGAACAGGGCAGACCAACGTGGGGTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22853:372..3911+

>mRNA_H-paniculata_contig22853.6102.1 ID=mRNA_H-paniculata_contig22853.6102.1|Name=mRNA_H-paniculata_contig22853.6102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig22853:372..3911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACATGGCAGTCAAGGGTACGGCTACAGCCATCAGCGGTACGAGGACAA
GCATCACATGCACCAACCTACGGGCAACCGTCGCTGGGGTTCCCAGGAGC
CAACACCGAAGCGCCCGGCAAGGGACATGGCAGTCAAGGGTACGGCTACA
GCCATCAGCGGTACGAGGACAAGCATCACATGCACCAACCTACGGGCAAC
CGTCGCTGGGGTTCCCAGGAGCCAACACCGAAGCGCCCGGCAAGCAAACA
AACAGGATGGCGTGGGCGTCAGCAGCAGCAGCAGCAATACCACCATCAAC
CCGCAGCCCAGCCTAAGGCGTCGTACTATGCTCACGCCCAGCCGACGCCA
GCTGTTCCGGCGATATATGCGCCTCCCCCAGCGGCTCCGACAGCGTACCC
GGGGTATTATCAGGCCCCCGTGGCGGCGCCAGCACCAGCGCCGCCTGGGG
TGTATTACCCGGTCGCCGCACCGGTGCTCGTGGCGCCTCAAACAAACAGG
ATGGCGTGGGCGTCAGCAGCAGCAGCAGCAATACCACCATCAACCCGCAG
CCCAGCCTAAGGCGTCGTACTATGCTCACGCCCAGCCGACGCCAGCTGTT
CCGGCGATATATGCGCCTCCCCCAGCGGCTCCGACAGCGTACCCGGGGTA
TTATCAGGCCCCCGTGGCGGCGCCAGCACCAGCGCCGCCTGGGGTGTATT
ACCCGGTCGCCGCACCGGTGCTCGTGGCGCCTCAGACTCCCCACAACTTC
CAGCATCCGGGCTATGCTCCCCCGCCCACGGTGCCCCCTGGCGGGGGAGG
GGCGCCGGGATACCCATCGATGGATTCTTTACGATCTAAGCTGGCGAACG
CGTTGTTGCAGACGAAAGGTACACCTGCTCCACAGACTCCCCACAACTTC
CAGCATCCGGGCTATGCTCCCCCGCCCACGGTGCCCCCTGGCGGGGGAGG
GGCGCCGGGATACCCATCGATGGATTCTTTACGATCTAAGCTGGCGAACG
CGTTGTTGCAGACGAAAGGTACACCTGCTCCACCTCCCTACGGATACGTG
TATCCAGCGCAACCGCAACAACCTGCGCAAGCAGGCGTGTACTACGCTAG
CCAACCGCCAACCTTACAACAACCTGTCGCTGCGCCGGCGCCGGCCCCGG
GCTACCCGAATCAACACATCAGATTTGATGAACAGGGCAGACCAACGTGG
GGTGGACCTCCCTACGGATACGTGTATCCAGCGCAACCGCAACAACCTGC
GCAAGCAGGCGTGTACTACGCTAGCCAACCGCCAACCTTACAACAACCTG
TCGCTGCGCCGGCGCCGGCCCCGGGCTACCCGAATCAACACATCAGATTT
GATGAACAGGGCAGACCAACGTGGGGTGGA
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