mRNA_H-paniculata_contig1094.610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1094.610.1
Unique NamemRNA_H-paniculata_contig1094.610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: D7G2W2_ECTSI (GroES chaperonin, plastidal n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W2_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 5.770e-100
Identity = 158/232 (68.10%), Postives = 193/232 (83.19%), Query Frame = 3 
Query:  303 PPTFLRATVTEAAASSYYTLDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            P   LR++ T A     Y LD KELR PLTPVEDTV++KVD+ K +TEGG+++P++   K TRGTV A GEGKRHWDTGV+IPITV+ G+RVV+GNFDGTSV+YQG EHLLMRDTELLMAY+G+EI LDT RM+GDRVLL++KA P+G+++S+AGVLIAES TRS RPT+G V KVGPGRMVPSG +MPMY + GD VKYKDFAAE++ I+G  T+E ELV +RNVD+LAKW
Sbjct:   62 PVGLLRSSETTAE----YELDEKELRGPLTPVEDTVMVKVDKQKAVTEGGVFLPKMKNVKITRGTVTAVGEGKRHWDTGVKIPITVEVGERVVYGNFDGTSVQYQGSEHLLMRDTELLMAYEGEEITLDTARMLGDRVLLQVKAVPKGTSSSAAGVLIAESATRSTRPTVGQVVKVGPGRMVPSGLMMPMYCEVGDCVKYKDFAAEVIQIEGLETDEFELVCIRNVDILAKW 289
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: A0A836CC47_9STRA (Chaperonin 10-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC47_9STRA)

HSP 1 Score: 204 bits (518), Expect = 9.060e-58
Identity = 95/209 (45.45%), Postives = 145/209 (69.38%), Query Frame = 3 
Query:  372 ELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            ++RAPL P+ DT+++K+  PKE T+GGL++P +   +PT GTVVA G GKRHW+TG   P+ VQ G +V+FG FDG++V+Y G +HLL+R  + L+ Y+GD     T +MVGDR+L+RI        T ++GV++A    R  + T+G V K+GPGR+ P+GK +P+    GD++K++DFAAE V ++    + ++ VV++N DV+AKW
Sbjct:    1 QIRAPLKPIGDTIIVKLAEPKEKTDGGLFLPTMDKVQPTTGTVVAAGPGKRHWETGQLYPMGVQPGQKVLFGRFDGSTVKYNGADHLLLRGDDCLLTYEGDAPSAATAQMVGDRILVRIVR--ELERTKASGVVVAAVAAREQKETMGEVVKMGPGRIAPNGKPLPLQCAVGDQIKFRDFAAEWVAMETLKVDGEDFVVIKNTDVIAKW 207
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.670e-47
Identity = 97/239 (40.59%), Postives = 149/239 (62.34%), Query Frame = 3 
Query:  282 FRRPSSSPPTFLRATVTEAAASSYYTLDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            F   SS P T  RA          + LDG+E+  PL P+ + +L+KV   ++M+ GG+ +P    EKPT G VVA G G++H +T V +P+ V+ G +V++G FDG SV Y G  H+L+RD ++L+ + G  + LD V  V DR+L+++K   +    S+ G+L+A S T++ RPT G V KVGPGR+  +G++  + VKPGD VK+KDFA   + I     +++  +V+ +VDVLA+W
Sbjct:   34 FSARSSFPKTMTRA----------HNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVK---KAQEKSAGGILLAPSMTKA-RPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKI-----QDENYLVMYSVDVLARW 253
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC)

HSP 1 Score: 175 bits (444), Expect = 9.840e-47
Identity = 93/213 (43.66%), Postives = 139/213 (65.26%), Query Frame = 3 
Query:  360 LDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            L+G+E+   LTP  + VL+K+   ++ TEGG+ +      K T GTV++ G GK H ++G+  P+ V++GD VV+G +DGT VEY G++H L+RD ++L+ ++GD++ LDT  ++ D VL  +K    G  T+S G+LIA S  +  +P+ G V KVGPGRM  +G+IM + +  GD VKY+DFA   VTI+G     DE  VVR  D+LAK+
Sbjct:   38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVL--VKVDDDGEETAS-GLLIAASAKKGGKPSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEG-----DEFSVVRMTDILAKF 242
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 6.870e-45
Identity = 86/219 (39.27%), Postives = 137/219 (62.56%), Query Frame = 3 
Query:  330 TEAAASSYYTLDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAE-------LVTIKGTATEEDELV 965
            T  AA++ ++L GK +  PL P+ + +L++V      T GG+ + + +V++PT GTVVA G GK+H +TGV+IP+    GD+V++G FDGT +EY G++H  +RDT++L  Y GD +  +T++M+GD++L+ ++   +   TSS   L A+ +    +PT+G V  VGPGR    G  +PM ++PGD +K++DFA         L T+     EED LV
Sbjct:    3 TAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVE--DKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISMGIGLRTVYRVMKEEDVLV 219
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.580e-42
Identity = 92/241 (38.17%), Postives = 146/241 (60.58%), Query Frame = 3 
Query:  276 AGFRRPSSSPPTFLRATVTEAAASSYYTLDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            A F   + +PP  L  +  E        LDG+ + + L PV + VL+K+      T GG+ MP+   ++P  G  VA G G+ H +TG  +P++V+AG+RV++G + GT ++Y  E+H+L+R+ E+L+ Y GD I  DTV  VGD+VL  ++ T     T+S G++++   ++S R   G++ + GPGRM   G+ +PM VKP DK+K++++  E V I+GT     E +VVR  D+LAKW
Sbjct:    7 AAFAPSARTPPRGLAVSAAETDVPP--NLDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVL--VEMTKEEKQTAS-GIVLSPEASKS-RVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIEGT-----EYMVVRANDILAKW 236
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS)

HSP 1 Score: 158 bits (400), Expect = 1.370e-40
Identity = 85/213 (39.91%), Postives = 133/213 (62.44%), Query Frame = 3 
Query:  360 LDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            L+G+E+   LTP  + VL+KV   +E T GG+ +      K T GTV++TG GK H ++G+  P+ V  G+ VV+G +DGT + Y G+ H L+RD ++L+ + G ++ LD V +V D VL+++      +   S G+LIA ++ +  +P+ G V KVGPGRM  +G+IM + +  GD+VK++DFA   V I+G     +E  VVR  D+LAK+
Sbjct:   37 LEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDG-KLTLDNVDVVSDNVLVKVNDDQEAT---SGGLLIAATSKKGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEG-----EEYAVVRMTDILAKF 240
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO)

HSP 1 Score: 158 bits (399), Expect = 1.950e-40
Identity = 79/213 (37.09%), Postives = 137/213 (64.32%), Query Frame = 3 
Query:  360 LDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            LDG++++  + P+ + +L+K    ++ TEGG+ +        T GTV A G GK H D+G+ + + V+ G+ VV+G FDGT ++  G+ H L+RD ++L+ + GD++ L++V +V D VL+ + ++    + +  G+L+A+S++++ R + G V KVGPG+M  +G++M M V PGD +K++DFA   V I+G      E  VV+ VD+LAK+
Sbjct:   37 LDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSS---ESATEGGILLAKSSSQTKRASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGK-----EYSVVKMVDILAKY 241
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 4.170e-38
Identity = 79/219 (36.07%), Postives = 129/219 (58.90%), Query Frame = 3 
Query:  342 ASSYYTLDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            A   +TLD K +R PL PV + +L+K+     +T GG+ +P  +++KP+ G VVATG G+ H  T   IP+ V  G RV++  + G  V+Y G +H L+ D +LL+ Y+G++     ++M+ D+VL++I    R    +  G++I+  T      + G V  VGPGR   +G++ P YV+PG+ VK++++A   +T+     E +   VVR VD L+KW
Sbjct:   50 AELVHTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKIT---RSEGRTDTGIVISAQTAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITL-----ESESYAVVRMVDCLSKW 260
[Close]
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Match: A0A7S1UT19_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT19_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.880e-38
Identity = 90/239 (37.66%), Postives = 139/239 (58.16%), Query Frame = 3 
Query:  285 RRPSSSPPTFLRATVTEAAASSYYTLDGKELRAPLTPVEDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQIPITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVRMVGDRVLLRIKATPRGSTTSSAGVLIAES-TTRSLRPTIGVVEKVGPGRMVPSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW 998
            RR   S  T LRA    A A+   TL+G+E++  + P+ + VL+K     E T+ G+ +        T+G VV+ G G+ H +TG  I I    GD V++G +DG  +++ GE H+L+RDT++L+ Y GD + LD V +V D VL+ + A  +   T++ GVL+A++    S RP+ G V KVGPG+M   G I+PM  K GD+VK++D+A   V I     ++ +  VV   DV+A +
Sbjct:   27 RRVGVSFATLLRAETETAEATKTNTLEGREIQGDIVPLNNFVLVKTVGVVEKTDSGIMLAGSEKVVKTKGKVVSVGPGRTHQETGRSIEIPFLNGDSVLYGEYDGIELDFNGETHMLVRDTDVLIKYSGDTLTLDAVDVVRDMVLIEVDAKDQ---TTAGGVLLADAGRDGSNRPSTGTVVKVGPGKMAGDGSILPMRAKVGDRVKFRDYAGNEVDI-----DKKQYSVVPMEDVMAMF 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1094.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2W2_ECTSI5.770e-10068.10GroES chaperonin, plastidal n=2 Tax=Ectocarpus Tax... [more]
A0A836CC47_9STRA9.060e-5845.45Chaperonin 10-like protein (Fragment) n=1 Tax=Trib... [more]
W7TNB8_9STRA2.670e-4740.5920 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
K0T1C8_THAOC9.840e-4743.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835YMZ7_9STRA6.870e-4539.27Chaperonin 10-like protein n=1 Tax=Tribonema minus... [more]
A0A7R9UAA2_9STRA3.580e-4238.17Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B8CCQ7_THAPS1.370e-4039.91Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5KFF1_FISSO1.950e-4037.09Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID... [more]
A0A835YHA6_9STRA4.170e-3836.07Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S1UT19_9STRA6.880e-3837.66Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1094contigH-paniculata_contig1094:3876..9374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue8.9e-42
Seed eggNOG ortholog159749.K0T1C8
KEGG koko:K04078
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Belongs to the GroES chaperonin family
EggNOG OGs2XGQX@2836,COG0234@1,KOG1641@2759
Ec32 ortholog descriptiongroES chaperonin, plastidal
Ec32 orthologEc-09_004690.1
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons3
Model size2090
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1094.610.1prot_H-paniculata_contig1094.610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1094 3974..8285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928800.2389417-UTR-H-paniculata_contig1094:3875..39731622928800.2389417-UTR-H-paniculata_contig1094:3875..3973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1094 3876..3973 +
1691480624.7995784-UTR-H-paniculata_contig1094:3875..39731691480624.7995784-UTR-H-paniculata_contig1094:3875..3973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1094 3876..3973 +
1622928800.3550792-UTR-H-paniculata_contig1094:8285..93741622928800.3550792-UTR-H-paniculata_contig1094:8285..9374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1094 8286..9374 +
1691480624.8482795-UTR-H-paniculata_contig1094:8285..93741691480624.8482795-UTR-H-paniculata_contig1094:8285..9374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1094 8286..9374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928800.2793648-CDS-H-paniculata_contig1094:3973..44921622928800.2793648-CDS-H-paniculata_contig1094:3973..4492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1094 3974..4492 +
1691480624.816295-CDS-H-paniculata_contig1094:3973..44921691480624.816295-CDS-H-paniculata_contig1094:3973..4492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1094 3974..4492 +
1622928800.306831-CDS-H-paniculata_contig1094:7039..73271622928800.306831-CDS-H-paniculata_contig1094:7039..7327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1094 7040..7327 +
1691480624.8253071-CDS-H-paniculata_contig1094:7039..73271691480624.8253071-CDS-H-paniculata_contig1094:7039..7327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1094 7040..7327 +
1622928800.327085-CDS-H-paniculata_contig1094:8189..82851622928800.327085-CDS-H-paniculata_contig1094:8189..8285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1094 8190..8285 +
1691480624.8342874-CDS-H-paniculata_contig1094:8189..82851691480624.8342874-CDS-H-paniculata_contig1094:8189..8285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1094 8190..8285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1094.610.1

>prot_H-paniculata_contig1094.610.1 ID=prot_H-paniculata_contig1094.610.1|Name=mRNA_H-paniculata_contig1094.610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
MVSLLPLASLTAAVVSMPLASAFVTSPVQPRFCGAHNPAAANPTSLSCSS
SSSSVAIGCAGFRRPSSSPPTFLRATVTEAAASSYYTLDGKELRAPLTPV
EDTVLIKVDRPKEMTEGGLYMPQVTVEKPTRGTVVATGEGKRHWDTGVQI
PITVQAGDRVVFGNFDGTSVEYQGEEHLLMRDTELLMAYQGDEIDLDTVR
MVGDRVLLRIKATPRGSTTSSAGVLIAESTTRSLRPTIGVVEKVGPGRMV
PSGKIMPMYVKPGDKVKYKDFAAELVTIKGTATEEDELVVVRNVDVLAKW
*
back to top

mRNA from alignment at H-paniculata_contig1094:3876..9374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1094.610.1 ID=mRNA_H-paniculata_contig1094.610.1|Name=mRNA_H-paniculata_contig1094.610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5499bp|location=Sequence derived from alignment at H-paniculata_contig1094:3876..9374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGCCGACACCAGCACAGGCCGTCCTCACCACAGCAGGTACGCCGCGCT
GTGGTACATTTCTATCATCTTGGCTGTAACTTCAATACCCATAACAAAAT
GGTGTCATTGTTGCCGCTTGCATCGCTTACCGCCGCTGTCGTGTCGATGC
CGCTGGCATCCGCTTTCGTGACCTCTCCTGTTCAACCACGGTTCTGCGGC
GCTCATAATCCTGCTGCTGCAAACCCCACATCATTGTCATGTAGCAGCAG
CAGCAGCAGCGTAGCAATAGGCTGCGCTGGGTTCAGACGGCCGTCATCAT
CGCCGCCGACCTTTCTCCGTGCTACAGTCACCGAGGCCGCGGCTTCTTCC
TATTATACTCTCGATGGAAAGGAGCTTCGCGCGCCTCTTACCCCCGTGGA
GGACACAGTGCTCATCAAGGTGGACCGACCGAAGGAGATGACGGAGGGCG
GACTGTACATGCCACAGGTCACAGTAGAAAAGCCCACACGAGGCACCGTG
GTGGCGACGGGGGAGGGTAAGCGTCACTGGGACACCGGAGTGCAGATCCC
AATCACAGTGCAGGCTGGGGACCGTGTGGTATTCGGGAACTTCGACGGTA
CCTCCGTGGAGTACCAGGTCAGTACTGAGGTTCTTTCTCAGGTAACAAAA
GGTGGGGCAGCGCTTGGATACCAGTACTTAGTGTGCTACATTCACGGCTG
CCGGGAAACGGTAAACGACGTGTTTTCGTACTGCATGTATCGCTTGTACA
TATTGCAGCGTTGTTTCACGGGCCATAAGCAACAACACCGGTTGTAGGGT
GGTAAAGTACGGTGGGTAGCGAGGGGTCGTTTATGAGGTTGTATATAGCA
GCTTGAGTCAGCCAAGTAGGCATGGATCTATCTATCTGCCTGGCGGAGGC
TGATTAGGCTGCACCGATCACACCCTCTGAACGTCCATCGCCGTCATGCT
TCTCGAACAATAGAAGAAGGTTCCAAGCTGAACGCACCCAACATCACTCA
AATTGTACTTGCTCGAATGAATGGGAATCAATCCCAAAAAAAGCCTTGGA
CGTGGCTACAAAGGGTGCGAGTGTTACTAGTGCCAGTCGCACCAGTTGGA
TATGTGTAAAGCTGTTCATGTGGAATCTTTTTTAGCGCCACGTCCAAAAA
TCTGTTTCGTCGGCGAAGTCAGTGAAACCAGCAAAAACACAGAAACGCAC
AGCGGTTGGTACACAATGATAGCCAAACTATATGACTCCCCCCTTCGACA
TCTTGGGCTCGACTCCACCCACCCCAGCCCACAAACGGCTCATGTGTCCG
GCCTAAACAATTATTGGAACAAATTCTACGCGGACAGACTCTATCAGGCT
TCTTCGTGTCATTTTCCAACTCCTCGTTCATACAAGATAATCACGGATAT
CTTGCACTGCGGGGATGCTTACGCGACGCCACTGACACGCGAACACACGA
TATCTCTAACAGCGTGTATTGAAATTAAGATCCAGCGCCTAACAACAGAA
GATAAATCAGTCCGGGACGAAATGCGGACCGACTTGAGGTCAACCGCTAA
CCACTTCTTGTCTAGGTGTCTTAGCACTGATCACTTCGATCTTGTGCAGG
GGAGCGTTCTAGAGCACTTGGAAGTTCCGCAGATCGTACTCCACTGTGGG
CTGAATATCGCTGAAGGCTCTGCTGTAATAGCCAATGTCTTGGTTGGCGG
GAGATCGACCCTTCCCAATGTTGTACAACAGCATGGTATCTCGAACTACA
TGAACAAATTGATGATATTAGCTGTAATTTAGGGTTGAAATTTATTGTTG
GACAAATAGCTGCCAGCTGGTTGAAAACCCTGTCTGGATATGTTCGTAAA
CTCCCGACGTTCCTTCACCCCAACGATCATATCACCTTTGTTGCAATCTC
CTCGAGATTACGTCGATACTGATGAAAGTATGTACCGAAATCTCACGGAT
AAAGGCCACGTCCTACCCATTTTTTCCATGGAAAATCACTAATTCTACAC
CTTGCACTCGAAAATAGCTTATCCAAAATTATGGAGGTAAATCCACACAG
CACCCTTACAGTTACTTACCTGATAATCGAGATTATTTTCGATGGGTAGC
TGCGTCAGAGGTTCTAGAGCGTTACAACAGTCCTCATGTTTACGCAAAAT
AGAGCGGGTTTCCCATACCTGTTCATTGGGTACGCCAGGATACTGATTCA
CGGGCAATGTGCAACTGCCATACATTTAAACACGCAAAGGGTGCACCTGA
ATTGCAGCCTGACAGTGGGCACAGTACAGTACTATGATCATAGCGTTGAG
GTCATACTTGATGAAGAGCTGCTTCCTTTGCCTGTGATGCAGTCATGCGC
GCTCGCACTGCATGTTGAATGTCAGCGCCAGGGATAGATTGATATGTGGT
GCAGCTTAGGTGTGTCGGTGTCCCGAAGGATTCATGACAAATACTGCTGA
ACGCTGGTCTCACTTCGGACGGCGATTTCGCGTGTATCTCCCGCTAATCA
AAAAGTATGCACAAGCATCTGATATTTTTCGTATGTCATAAGCCATGCCA
CCACGAGATCTCGCCTGATTTCGTTCACGATAGATCGGGTAGGTTTGTTC
TGGGCGAAATGGGAAAATACAGCCGTGATCTCTGATTACTTGATTTTAGT
GTTGAAGTCAAGAAACACAAGATTTGCGGTATCCCCTGCTTGGCACTGAA
TCTTCGGATCACCCTTCTACACTTGCTCTAGACTGAATGATTATATCTAG
CGATGATCGTAGAATACACGTTTTCGCGTTCGTGAGTATGAGGGAGTAAT
CATTTAAGACCACAAGTATGACAATAGAAACCGACCGACCTGTCCTTTCC
AGTTCTTGTAAGTTTGCTGATGAATGCAATATATGTCATCACCCAATAAT
CACTTACTGGCGTGAAGCTCACCGCCTGTTTACATATTTAGCCGAACCAA
GAGTATCTTGTCATTATATGTATATATATATGAATCAGAATGGGTCGACG
AAGTAAGCATCATTTCTAATGCCGAGTTTCTTCATTTTTCTCGTACACCC
ATATTGTATGATATGCTGTCCTGTTGTTGGAGTTATTCTTGGCAAGGACG
GTACATGCTATTATACCCCCGCCCCCGCCCCTCCCCCCTCCCCTTCATCT
CCTTGAAATAACAGGGCGAGGAACACTTGCTCATGCGCGACACAGAATTG
CTTATGGCATACCAAGGCGACGAAATCGATCTAGATACCGTTAGGATGGT
GGGCGACAGGGTGTTGCTCAGGATTAAAGCGACCCCCAGAGGCAGCACCA
CCTCTTCGGCAGGCGTGTTGATTGCTGAGTCCACCACACGGTCACTGCGA
CCTACAATAGGGGTAGTAGAAAAGGTTGGTCCCGGACGCATGGTACCGAG
TGGGAAGATAATGCCGATGTACGTAAAGCCGGGGGACAAGGTCAAGTACA
AGGTGAGACAAAAGGGTATGGCTGCCATGGTGGCGTTTTTTTCCCCCCAT
GCACCACCTGTCAGGAAATAGATTGTCCCGGTGCTTTTTCACAGACGCAA
ATGCTTTCATTTGTATGAAAAGAACAGAAGCAGATTTGTATTGTGCTTGT
GGTAGTAGGTGTTCCAGAACTTTGAATTACGGAATCGAGTATGTTTGCTT
TGCAATTTTGCTGTTGCTGACGTTTTGGAATATCTTTTTTAAAATACGAT
AGTCTAACAACGGTGTCGGAAAGGCCGTCGGCTTTGAGAAGATATTTTCC
GACAACAAGGTTTGGTATGTGTAATGTAACGTGGACAAATGTCCTAGAAC
TTGATGAGTCGTACGTGTGACCTCTCTCCCGACAGGTACGAGAAAGTTAC
GCCCGTGGCAATTGTGTGTCATGGGCAACCAAGTACGGTGTTACTGCGAC
ACCAGAGGGGTTGGACGACAGTGTATTAATTTGTTCGTGTCGTGCATTCA
GTTGAAAACTCTTACATTAATAATGCCTTAAAACCCCCGGTCATTCCTCG
CTTACAAACATTTATTACAGCTGGAATAGGACAAAAAAAATGTTATTTAC
GGTATTCCTACCCGAGCAACACAAGACAACGCCCAAAGTATATTGAAAAA
ATAGCTTGTTATGGAATATACCTTACACACTCCAAATGGATGGACAAATA
ATAATGACCGAAAATAGTATATATTCACGATAAGCGAATCTCGCAACCTG
CACAACCTGTTTCGAGGGTGCTTTTTGATCAGACAGCGCGAACTAAATGT
TGTTGATACTGTTCATCATGCAACTGGATGTTGTCGTCGTGTGCAACTGG
ATTGGCTTATGCAGGACTTCGCGGCGGAACTTGTCACGATCAAGGGCACG
GCGACAGAGGAGGACGAGCTGGTCGTTGTCCGGAACGTGGACGTCCTCGC
GAAGTGGTGACACGCGGTAACCTAGCTTGGTGGCCGGTCGCCTTCCTTAC
CGATATGACTGATTGTGCCGTTTATTTATGGTCTCCTTGTTCATCCTCCA
AAGCTGTTCGCCGGGGGTTCATAGTAGTAGGGCTTGGCCAAGCCATGACA
AGCCGATCCGATCTTTCTCTCATTTGCAGACTGCGGCTGTGTCTTCCTCT
GTCTCTTAGCCAACTTTTGGAATCCGTGTTCTTGTTGACGAAGAGGGTAT
GCATCTCATAACAAGGTGGGATGGCATTAACGAAGGAGGAATAAGTCGTG
AATGGGGGAAGCGTGTACCCGTTCTCCCGTCGACTGACGTTCACTGACCC
CAGTCGACTCGAGCGGGGCCAGATGATGTGAAGCTCACCTTTCCATGAAA
ACCGCACGCGGGGAACGGGGTGGTTGGGAGATGGTGGCCCTATCTCATTG
TAGTAAGTAGTGCGTTACGGCAGGGGAATGGGAGTTGGACCCGCACGTGG
AGGAACCCATGCGAGGTAAGGACGCGAAAATGGCTTTCCAATGGGCAGAA
TAGGTCAGGGTAGATGGAGTGGAGCATGTAAGGTTCTCTGAGGGATGTTC
CTCGCGGAGACGAGGTAAATACAGCAGCAGGGCCTGGGGGGTGAGAGAGG
AGTCGGGGACTAGAAAGAGGCACAGCGATGGGGAGCGGATATGTAGGAGT
GAGACGGCGAGCTATGTTACATGTGGCGCCGCTTGCACCGGACAACGAGC
TATTGGCCATTCTCCCGCAAACATGGATGGATATGACGGAGCAGTGGGCG
GCGCCTATTTTTTTCTCTGCTGTCGGGTTCCAAGTGTTTTTTTGAGACCG
AGCGGGCATGCTTTCATTTTGGGGCTGAGAGTTCCTGGATGGTTGAATCA
ACTCTTATTAAAAGAAGGTGCTGGTATCTCAACATCACTGAGCACAACAT
ACGAGAAGAACTGAATAATACGCTCGCTCGACTGTCGCTCTTGCCACACC
AAGCACCCGTTCATGAAGCGCTTGACCTGAACGCGTGGCATTGTTATCTC
CACATGTCTGGGCGGTTAATGTCATCAGCCTTTTCGTCCAACACGATAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1094:3876..9374+

>mRNA_H-paniculata_contig1094.610.1 ID=mRNA_H-paniculata_contig1094.610.1|Name=mRNA_H-paniculata_contig1094.610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig1094:3876..9374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCATTGTTGCCGCTTGCATCGCTTACCGCCGCTGTCGTGTCGAT
GCCGCTGGCATCCGCTTTCGTGACCTCTCCTGTTCAACCACGGTTCTGCG
GCGCTCATAATCCTGCTGCTGCAAACCCCACATCATTGTCATGTAGCAGC
AGCAGCAGCAGCGTAGCAATAGGCTGCGCTGGGTTCAGACGGCCGTCATC
ATCGCCGCCGACCTTTCTCCGTGCTACAGTCACCGAGGCCGCGGCTTCTT
CCTATTATACTCTCGATGGAAAGGAGCTTCGCGCGCCTCTTACCCCCGTG
GAGGACACAGTGCTCATCAAGGTGGACCGACCGAAGGAGATGACGGAGGG
CGGACTGTACATGCCACAGGTCACAGTAGAAAAGCCCACACGAGGCACCG
TGGTGGCGACGGGGGAGGGTAAGCGTCACTGGGACACCGGAGTGCAGATC
CCAATCACAGTGCAGGCTGGGGACCGTGTGGTATTCGGGAACTTCGACGG
TACCTCCGTGGAGTACCAGATGGTGTCATTGTTGCCGCTTGCATCGCTTA
CCGCCGCTGTCGTGTCGATGCCGCTGGCATCCGCTTTCGTGACCTCTCCT
GTTCAACCACGGTTCTGCGGCGCTCATAATCCTGCTGCTGCAAACCCCAC
ATCATTGTCATGTAGCAGCAGCAGCAGCAGCGTAGCAATAGGCTGCGCTG
GGTTCAGACGGCCGTCATCATCGCCGCCGACCTTTCTCCGTGCTACAGTC
ACCGAGGCCGCGGCTTCTTCCTATTATACTCTCGATGGAAAGGAGCTTCG
CGCGCCTCTTACCCCCGTGGAGGACACAGTGCTCATCAAGGTGGACCGAC
CGAAGGAGATGACGGAGGGCGGACTGTACATGCCACAGGTCACAGTAGAA
AAGCCCACACGAGGCACCGTGGTGGCGACGGGGGAGGGTAAGCGTCACTG
GGACACCGGAGTGCAGATCCCAATCACAGTGCAGGCTGGGGACCGTGTGG
TATTCGGGAACTTCGACGGTACCTCCGTGGAGTACCAGGGCGAGGAACAC
TTGCTCATGCGCGACACAGAATTGCTTATGGCATACCAAGGCGACGAAAT
CGATCTAGATACCGTTAGGATGGTGGGCGACAGGGTGTTGCTCAGGATTA
AAGCGACCCCCAGAGGCAGCACCACCTCTTCGGCAGGCGTGTTGATTGCT
GAGTCCACCACACGGTCACTGCGACCTACAATAGGGGTAGTAGAAAAGGT
TGGTCCCGGACGCATGGTACCGAGTGGGAAGATAATGCCGATGTACGTAA
AGCCGGGGGACAAGGTCAAGTACAAGGGCGAGGAACACTTGCTCATGCGC
GACACAGAATTGCTTATGGCATACCAAGGCGACGAAATCGATCTAGATAC
CGTTAGGATGGTGGGCGACAGGGTGTTGCTCAGGATTAAAGCGACCCCCA
GAGGCAGCACCACCTCTTCGGCAGGCGTGTTGATTGCTGAGTCCACCACA
CGGTCACTGCGACCTACAATAGGGGTAGTAGAAAAGGTTGGTCCCGGACG
CATGGTACCGAGTGGGAAGATAATGCCGATGTACGTAAAGCCGGGGGACA
AGGTCAAGTACAAGGACTTCGCGGCGGAACTTGTCACGATCAAGGGCACG
GCGACAGAGGAGGACGAGCTGGTCGTTGTCCGGAACGTGGACGTCCTCGC
GAAGTGGTGAGACTTCGCGGCGGAACTTGTCACGATCAAGGGCACGGCGA
CAGAGGAGGACGAGCTGGTCGTTGTCCGGAACGTGGACGTCCTCGCGAAG
TGGTGA
back to top